data_1K1P # _model_server_result.job_id 83zjMN5OrwAUNG73liJrvA _model_server_result.datetime_utc '2024-11-05 14:38:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k1p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":999}' # _entry.id 1K1P # _exptl.entry_id 1K1P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 429.513 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[((1R)-2-{(2S)-2-[({4-[AMINO(IMINO)METHYL]BENZYL}AMINO)CARBONYL]AZETIDINYL}-1-CYCLOHEXYL-2-OXOETHYL)AMINO]ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1K1P _cell.length_a 55.632 _cell.length_b 55.632 _cell.length_c 110.222 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K1P _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc5 B CA CA . A CA 480 1_555 D O HOH . A HOH 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc6 B CA CA . A CA 480 1_555 D O HOH . A HOH 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? # _chem_comp.formula 'C22 H31 N5 O4' _chem_comp.formula_weight 429.513 _chem_comp.id MEL _chem_comp.mon_nstd_flag . _chem_comp.name '[((1R)-2-{(2S)-2-[({4-[AMINO(IMINO)METHYL]BENZYL}AMINO)CARBONYL]AZETIDINYL}-1-CYCLOHEXYL-2-OXOETHYL)AMINO]ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MELAGATRAN (ASTRA-ZENECA)' # _atom_sites.entry_id 1K1P _atom_sites.fract_transf_matrix[1][1] 0.017975 _atom_sites.fract_transf_matrix[1][2] 0.010378 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009073 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 480 480 CA CA . C 3 MEL A 1 999 999 MEL MEL . D 4 HOH A 1 406 406 HOH HOH . D 4 HOH A 2 408 408 HOH HOH . D 4 HOH A 3 410 410 HOH HOH . D 4 HOH A 4 412 412 HOH HOH . D 4 HOH A 5 415 415 HOH HOH . D 4 HOH A 6 416 416 HOH HOH . D 4 HOH A 7 429 429 HOH HOH . D 4 HOH A 8 430 430 HOH HOH . D 4 HOH A 9 439 439 HOH HOH . D 4 HOH A 10 457 457 HOH HOH . D 4 HOH A 11 470 470 HOH HOH . D 4 HOH A 12 473 473 HOH HOH . D 4 HOH A 13 516 516 HOH HOH . D 4 HOH A 14 562 562 HOH HOH . D 4 HOH A 15 604 604 HOH HOH . D 4 HOH A 16 700 700 HOH HOH . D 4 HOH A 17 701 701 HOH HOH . D 4 HOH A 18 703 703 HOH HOH . D 4 HOH A 19 704 704 HOH HOH . D 4 HOH A 20 705 705 HOH HOH . D 4 HOH A 21 706 706 HOH HOH . D 4 HOH A 22 707 707 HOH HOH . D 4 HOH A 23 708 708 HOH HOH . D 4 HOH A 24 709 709 HOH HOH . D 4 HOH A 25 711 711 HOH HOH . D 4 HOH A 26 712 712 HOH HOH . D 4 HOH A 27 713 713 HOH HOH . D 4 HOH A 28 714 714 HOH HOH . D 4 HOH A 29 715 715 HOH HOH . D 4 HOH A 30 716 716 HOH HOH . D 4 HOH A 31 717 717 HOH HOH . D 4 HOH A 32 718 718 HOH HOH . D 4 HOH A 33 719 719 HOH HOH . D 4 HOH A 34 720 720 HOH HOH . D 4 HOH A 35 721 721 HOH HOH . D 4 HOH A 36 722 722 HOH HOH . D 4 HOH A 37 723 723 HOH HOH . D 4 HOH A 38 725 725 HOH HOH . D 4 HOH A 39 731 731 HOH HOH . D 4 HOH A 40 734 734 HOH HOH . D 4 HOH A 41 736 736 HOH HOH . D 4 HOH A 42 748 748 HOH HOH . D 4 HOH A 43 755 755 HOH HOH . D 4 HOH A 44 757 757 HOH HOH . D 4 HOH A 45 759 759 HOH HOH . D 4 HOH A 46 760 760 HOH HOH . D 4 HOH A 47 761 761 HOH HOH . D 4 HOH A 48 764 764 HOH HOH . D 4 HOH A 49 766 766 HOH HOH . D 4 HOH A 50 769 769 HOH HOH . D 4 HOH A 51 770 770 HOH HOH . D 4 HOH A 52 771 771 HOH HOH . D 4 HOH A 53 772 772 HOH HOH . D 4 HOH A 54 773 773 HOH HOH . D 4 HOH A 55 776 776 HOH HOH . D 4 HOH A 56 777 777 HOH HOH . D 4 HOH A 57 778 778 HOH HOH . D 4 HOH A 58 780 780 HOH HOH . D 4 HOH A 59 781 781 HOH HOH . D 4 HOH A 60 783 783 HOH HOH . D 4 HOH A 61 784 784 HOH HOH . D 4 HOH A 62 785 785 HOH HOH . D 4 HOH A 63 786 786 HOH HOH . D 4 HOH A 64 787 787 HOH HOH . D 4 HOH A 65 790 790 HOH HOH . D 4 HOH A 66 792 792 HOH HOH . D 4 HOH A 67 793 793 HOH HOH . D 4 HOH A 68 901 901 HOH HOH . D 4 HOH A 69 902 902 HOH HOH . D 4 HOH A 70 903 903 HOH HOH . D 4 HOH A 71 904 904 HOH HOH . D 4 HOH A 72 906 906 HOH HOH . D 4 HOH A 73 908 908 HOH HOH . D 4 HOH A 74 910 910 HOH HOH . D 4 HOH A 75 911 911 HOH HOH . D 4 HOH A 76 913 913 HOH HOH . D 4 HOH A 77 914 914 HOH HOH . D 4 HOH A 78 916 916 HOH HOH . D 4 HOH A 79 917 917 HOH HOH . D 4 HOH A 80 918 918 HOH HOH . D 4 HOH A 81 919 919 HOH HOH . D 4 HOH A 82 1202 1202 HOH HOH . D 4 HOH A 83 1203 1203 HOH HOH . D 4 HOH A 84 1204 1204 HOH HOH . D 4 HOH A 85 1205 1205 HOH HOH . D 4 HOH A 86 1206 1206 HOH HOH . D 4 HOH A 87 1208 1208 HOH HOH . D 4 HOH A 88 1210 1210 HOH HOH . D 4 HOH A 89 1211 1211 HOH HOH . D 4 HOH A 90 1212 1212 HOH HOH . D 4 HOH A 91 1213 1213 HOH HOH . D 4 HOH A 92 1214 1214 HOH HOH . D 4 HOH A 93 1216 1216 HOH HOH . D 4 HOH A 94 1217 1217 HOH HOH . D 4 HOH A 95 1218 1218 HOH HOH . D 4 HOH A 96 1220 1220 HOH HOH . D 4 HOH A 97 1224 1224 HOH HOH . D 4 HOH A 98 1226 1226 HOH HOH . D 4 HOH A 99 1227 1227 HOH HOH . D 4 HOH A 100 1228 1228 HOH HOH . D 4 HOH A 101 1232 1232 HOH HOH . D 4 HOH A 102 1234 1234 HOH HOH . D 4 HOH A 103 1236 1236 HOH HOH . D 4 HOH A 104 1237 1237 HOH HOH . D 4 HOH A 105 1238 1238 HOH HOH . D 4 HOH A 106 1240 1240 HOH HOH . D 4 HOH A 107 1244 1244 HOH HOH . D 4 HOH A 108 1245 1245 HOH HOH . D 4 HOH A 109 1246 1246 HOH HOH . D 4 HOH A 110 1249 1249 HOH HOH . D 4 HOH A 111 1250 1250 HOH HOH . D 4 HOH A 112 1251 1251 HOH HOH . D 4 HOH A 113 1253 1253 HOH HOH . D 4 HOH A 114 1256 1256 HOH HOH . D 4 HOH A 115 1257 1257 HOH HOH . D 4 HOH A 116 1258 1258 HOH HOH . D 4 HOH A 117 1264 1264 HOH HOH . D 4 HOH A 118 1266 1266 HOH HOH . D 4 HOH A 119 1267 1267 HOH HOH . D 4 HOH A 120 1268 1268 HOH HOH . D 4 HOH A 121 1274 1274 HOH HOH . D 4 HOH A 122 1280 1280 HOH HOH . D 4 HOH A 123 1281 1281 HOH HOH . D 4 HOH A 124 1284 1284 HOH HOH . D 4 HOH A 125 1285 1285 HOH HOH . D 4 HOH A 126 1286 1286 HOH HOH . D 4 HOH A 127 1288 1288 HOH HOH . D 4 HOH A 128 1289 1289 HOH HOH . D 4 HOH A 129 1290 1290 HOH HOH . D 4 HOH A 130 1293 1293 HOH HOH . D 4 HOH A 131 1294 1294 HOH HOH . D 4 HOH A 132 1295 1295 HOH HOH . D 4 HOH A 133 1300 1300 HOH HOH . D 4 HOH A 134 1302 1302 HOH HOH . D 4 HOH A 135 1306 1306 HOH HOH . D 4 HOH A 136 1309 1309 HOH HOH . D 4 HOH A 137 1310 1310 HOH HOH . D 4 HOH A 138 1311 1311 HOH HOH . D 4 HOH A 139 1317 1317 HOH HOH . D 4 HOH A 140 1318 1318 HOH HOH . D 4 HOH A 141 1319 1319 HOH HOH . D 4 HOH A 142 1320 1320 HOH HOH . D 4 HOH A 143 1322 1322 HOH HOH . D 4 HOH A 144 1323 1323 HOH HOH . D 4 HOH A 145 1324 1324 HOH HOH . D 4 HOH A 146 1330 1330 HOH HOH . D 4 HOH A 147 1339 1339 HOH HOH . D 4 HOH A 148 1345 1345 HOH HOH . D 4 HOH A 149 1353 1353 HOH HOH . D 4 HOH A 150 1354 1354 HOH HOH . D 4 HOH A 151 1400 1400 HOH HOH . D 4 HOH A 152 1401 1401 HOH HOH . D 4 HOH A 153 1404 1404 HOH HOH . D 4 HOH A 154 1405 1405 HOH HOH . D 4 HOH A 155 1406 1406 HOH HOH . D 4 HOH A 156 1407 1407 HOH HOH . D 4 HOH A 157 1409 1409 HOH HOH . D 4 HOH A 158 1410 1410 HOH HOH . D 4 HOH A 159 1411 1411 HOH HOH . D 4 HOH A 160 1415 1415 HOH HOH . D 4 HOH A 161 1416 1416 HOH HOH . D 4 HOH A 162 1417 1417 HOH HOH . D 4 HOH A 163 1500 1500 HOH HOH . D 4 HOH A 164 1501 1501 HOH HOH . D 4 HOH A 165 1502 1502 HOH HOH . D 4 HOH A 166 1503 1503 HOH HOH . D 4 HOH A 167 1504 1504 HOH HOH . D 4 HOH A 168 1507 1507 HOH HOH . D 4 HOH A 169 1508 1508 HOH HOH . D 4 HOH A 170 1510 1510 HOH HOH . D 4 HOH A 171 1512 1512 HOH HOH . D 4 HOH A 172 1513 1513 HOH HOH . D 4 HOH A 173 1600 1600 HOH HOH . D 4 HOH A 174 1601 1601 HOH HOH . D 4 HOH A 175 1602 1602 HOH HOH . D 4 HOH A 176 1603 1603 HOH HOH . D 4 HOH A 177 1604 1604 HOH HOH . D 4 HOH A 178 1605 1605 HOH HOH . D 4 HOH A 179 1606 1606 HOH HOH . D 4 HOH A 180 1607 1607 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MEL . . . C 3 40.262 24.976 55.833 1 20.89 ? C1 MEL 999 A 1 HETATM 2 C C2 MEL . . . C 3 39.084 25.912 55.382 1 22.81 ? C2 MEL 999 A 1 HETATM 3 C C3 MEL . . . C 3 37.731 25.353 55.925 1 21.37 ? C3 MEL 999 A 1 HETATM 4 C C4 MEL . . . C 3 37.778 25.294 57.464 1 20.7 ? C4 MEL 999 A 1 HETATM 5 C C5 MEL . . . C 3 38.962 24.407 57.916 1 22.16 ? C5 MEL 999 A 1 HETATM 6 C C6 MEL . . . C 3 40.305 24.961 57.384 1 22.89 ? C6 MEL 999 A 1 HETATM 7 N N7 MEL . . . C 3 42.758 25.096 56.05 1 15.84 ? N7 MEL 999 A 1 HETATM 8 C C8 MEL . . . C 3 41.612 25.292 55.112 1 18.65 ? C8 MEL 999 A 1 HETATM 9 C C9 MEL . . . C 3 41.749 24.467 53.841 1 17.88 ? C9 MEL 999 A 1 HETATM 10 O O0 MEL . . . C 3 42.338 23.411 53.862 1 18.46 ? O0 MEL 999 A 1 HETATM 11 N N11 MEL . . . C 3 41.059 24.876 52.778 1 18.21 ? N11 MEL 999 A 1 HETATM 12 C C12 MEL . . . C 3 41.367 24.357 51.397 1 16.38 ? C12 MEL 999 A 1 HETATM 13 C C13 MEL . . . C 3 42.826 23.87 51.185 1 14.62 ? C13 MEL 999 A 1 HETATM 14 O O14 MEL . . . C 3 43.743 24.685 51.39 1 14.94 ? O14 MEL 999 A 1 HETATM 15 N N15 MEL . . . C 3 43.053 22.632 50.729 1 15.04 ? N15 MEL 999 A 1 HETATM 16 C C16 MEL . . . C 3 44.426 22.159 50.474 1 12.86 ? C16 MEL 999 A 1 HETATM 17 C C17 MEL . . . C 3 44.795 21.04 51.428 1 13.56 ? C17 MEL 999 A 1 HETATM 18 C C18 MEL . . . C 3 45.083 21.36 52.765 1 12.85 ? C18 MEL 999 A 1 HETATM 19 C C19 MEL . . . C 3 45.433 20.336 53.671 1 13.25 ? C19 MEL 999 A 1 HETATM 20 C C20 MEL . . . C 3 45.505 18.99 53.247 1 13.36 ? C20 MEL 999 A 1 HETATM 21 C C21 MEL . . . C 3 45.237 18.675 51.907 1 11.96 ? C21 MEL 999 A 1 HETATM 22 C C22 MEL . . . C 3 44.883 19.692 51.011 1 14.57 ? C22 MEL 999 A 1 HETATM 23 C C23 MEL . . . C 3 45.874 17.902 54.214 1 10.38 ? C23 MEL 999 A 1 HETATM 24 N N24 MEL . . . C 3 46.657 18.178 55.214 1 11.94 ? N24 MEL 999 A 1 HETATM 25 N N25 MEL . . . C 3 45.405 16.684 54.025 1 10.36 ? N25 MEL 999 A 1 HETATM 26 C C26 MEL . . . C 3 41.045 25.745 50.82 1 17.65 ? C26 MEL 999 A 1 HETATM 27 C C27 MEL . . . C 3 41.271 26.258 52.274 1 17.92 ? C27 MEL 999 A 1 HETATM 28 C C28 MEL . . . C 3 44.094 25.528 55.573 1 13.55 ? C28 MEL 999 A 1 HETATM 29 C C29 MEL . . . C 3 45.212 25.106 56.478 1 13.49 ? C29 MEL 999 A 1 HETATM 30 O O30 MEL . . . C 3 45.027 25.142 57.702 1 15.02 ? O30 MEL 999 A 1 HETATM 31 O O31 MEL . . . C 3 46.305 24.74 55.975 1 16.39 ? O31 MEL 999 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #