data_1K24 # _model_server_result.job_id 9tqYC-9-EYH2BN5d09s14g _model_server_result.datetime_utc '2024-12-26 15:51:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k24 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 1K24 # _exptl.entry_id 1K24 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1K24 _cell.length_a 96.859 _cell.length_b 46.346 _cell.length_c 73.977 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K24 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 96.859 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 13 A HIS 13 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc2 A OD2 ASP 15 A ASP 15 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc3 A OE1 GLU 28 A GLU 28 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.726 ? metalc ? metalc4 A OE1 GLU 28 A GLU 28 2_655 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc5 A ND1 HIS 30 A HIS 30 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc6 A ND1 HIS 30 A HIS 30 2_655 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc7 A ND1 HIS 35 A HIS 35 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc8 A OD2 ASP 69 A ASP 69 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc9 A NE2 HIS 128 A HIS 128 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc10 A OG1 THR 176 A THR 176 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc11 A OE2 GLU 223 A GLU 223 3_546 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc12 A OE1 GLU 223 A GLU 223 3_546 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc13 B ZN ZN . A ZN 401 1_555 G O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 1K24 _atom_sites.fract_transf_matrix[1][1] 0.010324 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013518 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 2 ZN A 1 402 2 ZN ZN . D 2 ZN A 1 403 4 ZN ZN . E 3 1PE A 1 301 1 1PE CE5 . F 3 1PE A 1 302 2 1PE CE5 . G 4 HOH A 1 404 1 HOH HOH . G 4 HOH A 2 405 2 HOH HOH . G 4 HOH A 3 406 3 HOH HOH . G 4 HOH A 4 407 4 HOH HOH . G 4 HOH A 5 408 5 HOH HOH . G 4 HOH A 6 409 6 HOH HOH . G 4 HOH A 7 410 7 HOH HOH . G 4 HOH A 8 411 8 HOH HOH . G 4 HOH A 9 412 9 HOH HOH . G 4 HOH A 10 413 10 HOH HOH . G 4 HOH A 11 414 11 HOH HOH . G 4 HOH A 12 415 12 HOH HOH . G 4 HOH A 13 416 13 HOH HOH . G 4 HOH A 14 417 14 HOH HOH . G 4 HOH A 15 418 15 HOH HOH . G 4 HOH A 16 419 16 HOH HOH . G 4 HOH A 17 420 17 HOH HOH . G 4 HOH A 18 421 18 HOH HOH . G 4 HOH A 19 422 19 HOH HOH . G 4 HOH A 20 423 20 HOH HOH . G 4 HOH A 21 424 21 HOH HOH . G 4 HOH A 22 425 22 HOH HOH . G 4 HOH A 23 426 23 HOH HOH . G 4 HOH A 24 427 24 HOH HOH . G 4 HOH A 25 428 25 HOH HOH . G 4 HOH A 26 429 26 HOH HOH . G 4 HOH A 27 430 27 HOH HOH . G 4 HOH A 28 431 28 HOH HOH . G 4 HOH A 29 432 29 HOH HOH . G 4 HOH A 30 433 30 HOH HOH . G 4 HOH A 31 434 31 HOH HOH . G 4 HOH A 32 435 32 HOH HOH . G 4 HOH A 33 436 33 HOH HOH . G 4 HOH A 34 437 34 HOH HOH . G 4 HOH A 35 438 35 HOH HOH . G 4 HOH A 36 439 36 HOH HOH . G 4 HOH A 37 440 37 HOH HOH . G 4 HOH A 38 441 38 HOH HOH . G 4 HOH A 39 442 39 HOH HOH . G 4 HOH A 40 443 40 HOH HOH . G 4 HOH A 41 444 41 HOH HOH . G 4 HOH A 42 445 42 HOH HOH . G 4 HOH A 43 446 43 HOH HOH . G 4 HOH A 44 447 44 HOH HOH . G 4 HOH A 45 448 45 HOH HOH . G 4 HOH A 46 449 46 HOH HOH . G 4 HOH A 47 450 47 HOH HOH . G 4 HOH A 48 451 48 HOH HOH . G 4 HOH A 49 452 49 HOH HOH . G 4 HOH A 50 453 50 HOH HOH . G 4 HOH A 51 454 51 HOH HOH . G 4 HOH A 52 455 52 HOH HOH . G 4 HOH A 53 456 53 HOH HOH . G 4 HOH A 54 457 54 HOH HOH . G 4 HOH A 55 458 55 HOH HOH . G 4 HOH A 56 459 56 HOH HOH . G 4 HOH A 57 460 57 HOH HOH . G 4 HOH A 58 461 58 HOH HOH . G 4 HOH A 59 462 59 HOH HOH . G 4 HOH A 60 463 60 HOH HOH . G 4 HOH A 61 464 61 HOH HOH . G 4 HOH A 62 465 62 HOH HOH . G 4 HOH A 63 466 63 HOH HOH . G 4 HOH A 64 467 64 HOH HOH . G 4 HOH A 65 468 65 HOH HOH . G 4 HOH A 66 469 66 HOH HOH . G 4 HOH A 67 470 67 HOH HOH . G 4 HOH A 68 471 68 HOH HOH . G 4 HOH A 69 472 69 HOH HOH . G 4 HOH A 70 473 70 HOH HOH . G 4 HOH A 71 474 71 HOH HOH . G 4 HOH A 72 475 72 HOH HOH . G 4 HOH A 73 476 73 HOH HOH . G 4 HOH A 74 477 74 HOH HOH . G 4 HOH A 75 478 75 HOH HOH . G 4 HOH A 76 479 76 HOH HOH . G 4 HOH A 77 480 77 HOH HOH . G 4 HOH A 78 481 78 HOH HOH . G 4 HOH A 79 482 79 HOH HOH . G 4 HOH A 80 483 80 HOH HOH . G 4 HOH A 81 484 81 HOH HOH . G 4 HOH A 82 485 82 HOH HOH . G 4 HOH A 83 486 83 HOH HOH . G 4 HOH A 84 487 84 HOH HOH . G 4 HOH A 85 488 85 HOH HOH . G 4 HOH A 86 489 86 HOH HOH . G 4 HOH A 87 490 87 HOH HOH . G 4 HOH A 88 491 88 HOH HOH . G 4 HOH A 89 492 89 HOH HOH . G 4 HOH A 90 493 90 HOH HOH . G 4 HOH A 91 494 91 HOH HOH . G 4 HOH A 92 495 92 HOH HOH . G 4 HOH A 93 496 93 HOH HOH . G 4 HOH A 94 497 94 HOH HOH . G 4 HOH A 95 498 95 HOH HOH . G 4 HOH A 96 499 96 HOH HOH . G 4 HOH A 97 500 97 HOH HOH . G 4 HOH A 98 501 98 HOH HOH . G 4 HOH A 99 502 99 HOH HOH . G 4 HOH A 100 503 100 HOH HOH . G 4 HOH A 101 504 101 HOH HOH . G 4 HOH A 102 505 102 HOH HOH . G 4 HOH A 103 506 103 HOH HOH . G 4 HOH A 104 507 104 HOH HOH . G 4 HOH A 105 508 105 HOH HOH . G 4 HOH A 106 509 106 HOH HOH . G 4 HOH A 107 510 107 HOH HOH . G 4 HOH A 108 511 108 HOH HOH . G 4 HOH A 109 512 109 HOH HOH . G 4 HOH A 110 513 110 HOH HOH . G 4 HOH A 111 514 111 HOH HOH . G 4 HOH A 112 515 112 HOH HOH . G 4 HOH A 113 516 113 HOH HOH . G 4 HOH A 114 517 114 HOH HOH . G 4 HOH A 115 518 115 HOH HOH . G 4 HOH A 116 519 116 HOH HOH . G 4 HOH A 117 520 117 HOH HOH . G 4 HOH A 118 521 118 HOH HOH . G 4 HOH A 119 522 119 HOH HOH . G 4 HOH A 120 523 120 HOH HOH . G 4 HOH A 121 524 121 HOH HOH . G 4 HOH A 122 525 122 HOH HOH . G 4 HOH A 123 526 123 HOH HOH . G 4 HOH A 124 527 124 HOH HOH . G 4 HOH A 125 528 125 HOH HOH . G 4 HOH A 126 529 126 HOH HOH . G 4 HOH A 127 530 127 HOH HOH . G 4 HOH A 128 531 128 HOH HOH . G 4 HOH A 129 532 129 HOH HOH . G 4 HOH A 130 533 130 HOH HOH . G 4 HOH A 131 534 131 HOH HOH . G 4 HOH A 132 535 132 HOH HOH . G 4 HOH A 133 536 133 HOH HOH . G 4 HOH A 134 537 134 HOH HOH . G 4 HOH A 135 538 135 HOH HOH . G 4 HOH A 136 539 136 HOH HOH . G 4 HOH A 137 540 137 HOH HOH . G 4 HOH A 138 541 138 HOH HOH . G 4 HOH A 139 542 139 HOH HOH . G 4 HOH A 140 543 140 HOH HOH . G 4 HOH A 141 544 141 HOH HOH . G 4 HOH A 142 545 142 HOH HOH . G 4 HOH A 143 546 143 HOH HOH . G 4 HOH A 144 547 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . F 3 15.216 -8.929 -15.071 1 75.2 ? OH2 1PE 302 A 1 HETATM 2 C C12 1PE . . . F 3 14.836 -8.025 -14.039 1 74.08 ? C12 1PE 302 A 1 HETATM 3 C C22 1PE . . . F 3 15.759 -8.176 -12.849 1 72.86 ? C22 1PE 302 A 1 HETATM 4 O OH3 1PE . . . F 3 15.37 -9.01 -11.72 1 72.76 ? OH3 1PE 302 A 1 HETATM 5 C C13 1PE . . . F 3 15.062 -8.371 -9.404 1 69.82 ? C13 1PE 302 A 1 HETATM 6 C C23 1PE . . . F 3 14.412 -8.527 -10.757 1 71.56 ? C23 1PE 302 A 1 HETATM 7 O OH4 1PE . . . F 3 15.407 -9.546 -8.625 1 69.8 ? OH4 1PE 302 A 1 HETATM 8 C C14 1PE . . . F 3 16.119 -10.018 -6.387 1 67.85 ? C14 1PE 302 A 1 HETATM 9 C C24 1PE . . . F 3 15.159 -9.593 -7.191 1 67.6 ? C24 1PE 302 A 1 HETATM 10 O OH5 1PE . . . F 3 15.849 -10.345 -5.001 1 67.9 ? OH5 1PE 302 A 1 HETATM 11 C C15 1PE . . . F 3 16.196 -11.877 -3.187 1 71.99 ? C15 1PE 302 A 1 HETATM 12 C C25 1PE . . . F 3 16.519 -11.482 -4.408 1 69.89 ? C25 1PE 302 A 1 HETATM 13 O OH6 1PE . . . F 3 17.129 -12.668 -2.402 1 73.33 ? OH6 1PE 302 A 1 HETATM 14 C C16 1PE . . . F 3 16.951 -10.994 -0.433 1 77.85 ? C16 1PE 302 A 1 HETATM 15 C C26 1PE . . . F 3 17.383 -12.33 -1.006 1 76.08 ? C26 1PE 302 A 1 HETATM 16 O OH7 1PE . . . F 3 15.545 -11.004 -0.164 1 79.97 ? OH7 1PE 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 16 #