data_1K2E # _model_server_result.job_id gYQCPp6UR4WYdfkRSiQqjA _model_server_result.datetime_utc '2025-03-05 19:55:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k2e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":207}' # _entry.id 1K2E # _exptl.entry_id 1K2E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1K2E _cell.length_a 52.712 _cell.length_b 72.612 _cell.length_c 85.175 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K2E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 K N N ? 4 L N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D NI NI . A NI 211 1_555 O O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.778 ? metalc ? metalc2 J NI NI . B NI 212 1_555 P O HOH . B HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc3 J NI NI . B NI 212 1_555 P O HOH . B HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 104 n n C1 C2 GOL sing 105 n n C1 H11 GOL sing 106 n n C1 H12 GOL sing 107 n n O1 HO1 GOL sing 108 n n C2 O2 GOL sing 109 n n C2 C3 GOL sing 110 n n C2 H2 GOL sing 111 n n O2 HO2 GOL sing 112 n n C3 O3 GOL sing 113 n n C3 H31 GOL sing 114 n n C3 H32 GOL sing 115 n n O3 HO3 GOL sing 116 n n # _atom_sites.entry_id 1K2E _atom_sites.fract_transf_matrix[1][1] 0.018971 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 201 201 SO4 SO4 . D 3 NI A 1 211 211 NI NI2 . E 4 GOL A 1 203 203 GOL CRY . F 4 GOL A 1 204 204 GOL CRY . G 4 GOL A 1 206 206 GOL CRY . H 5 ACY A 1 210 210 ACY ACY . I 2 SO4 B 1 202 202 SO4 SO4 . J 3 NI B 1 212 212 NI NI2 . K 4 GOL B 1 205 205 GOL CRY . L 4 GOL B 1 207 207 GOL CRY . M 4 GOL B 1 208 208 GOL CRY . N 5 ACY B 1 209 209 ACY ACY . O 6 HOH A 1 301 301 HOH TIP . O 6 HOH A 2 302 302 HOH TIP . O 6 HOH A 3 303 303 HOH TIP . O 6 HOH A 4 305 305 HOH TIP . O 6 HOH A 5 307 307 HOH TIP . O 6 HOH A 6 308 308 HOH TIP . O 6 HOH A 7 309 309 HOH TIP . O 6 HOH A 8 310 310 HOH TIP . O 6 HOH A 9 316 316 HOH TIP . O 6 HOH A 10 318 318 HOH TIP . O 6 HOH A 11 320 320 HOH TIP . O 6 HOH A 12 321 321 HOH TIP . O 6 HOH A 13 322 322 HOH TIP . O 6 HOH A 14 324 324 HOH TIP . O 6 HOH A 15 325 325 HOH TIP . O 6 HOH A 16 326 326 HOH TIP . O 6 HOH A 17 328 328 HOH TIP . O 6 HOH A 18 329 329 HOH TIP . O 6 HOH A 19 330 330 HOH TIP . O 6 HOH A 20 331 331 HOH TIP . O 6 HOH A 21 333 333 HOH TIP . O 6 HOH A 22 334 334 HOH TIP . O 6 HOH A 23 335 335 HOH TIP . O 6 HOH A 24 336 336 HOH TIP . O 6 HOH A 25 337 337 HOH TIP . O 6 HOH A 26 338 338 HOH TIP . O 6 HOH A 27 340 340 HOH TIP . O 6 HOH A 28 341 341 HOH TIP . O 6 HOH A 29 344 344 HOH TIP . O 6 HOH A 30 346 346 HOH TIP . O 6 HOH A 31 348 348 HOH TIP . O 6 HOH A 32 354 354 HOH TIP . O 6 HOH A 33 355 355 HOH TIP . O 6 HOH A 34 356 356 HOH TIP . O 6 HOH A 35 357 357 HOH TIP . O 6 HOH A 36 359 359 HOH TIP . O 6 HOH A 37 360 360 HOH TIP . O 6 HOH A 38 361 361 HOH TIP . O 6 HOH A 39 364 364 HOH TIP . O 6 HOH A 40 367 367 HOH TIP . O 6 HOH A 41 368 368 HOH TIP . O 6 HOH A 42 373 373 HOH TIP . O 6 HOH A 43 375 375 HOH TIP . O 6 HOH A 44 376 376 HOH TIP . O 6 HOH A 45 378 378 HOH TIP . O 6 HOH A 46 380 380 HOH TIP . O 6 HOH A 47 382 382 HOH TIP . O 6 HOH A 48 383 383 HOH TIP . O 6 HOH A 49 384 384 HOH TIP . O 6 HOH A 50 385 385 HOH TIP . O 6 HOH A 51 388 388 HOH TIP . O 6 HOH A 52 393 393 HOH TIP . O 6 HOH A 53 394 394 HOH TIP . O 6 HOH A 54 400 400 HOH TIP . O 6 HOH A 55 401 401 HOH TIP . O 6 HOH A 56 402 402 HOH TIP . O 6 HOH A 57 403 403 HOH TIP . O 6 HOH A 58 406 406 HOH TIP . O 6 HOH A 59 407 407 HOH TIP . O 6 HOH A 60 408 408 HOH TIP . O 6 HOH A 61 409 409 HOH TIP . O 6 HOH A 62 410 410 HOH TIP . O 6 HOH A 63 411 411 HOH TIP . O 6 HOH A 64 412 412 HOH TIP . O 6 HOH A 65 413 413 HOH TIP . O 6 HOH A 66 414 414 HOH TIP . O 6 HOH A 67 416 416 HOH TIP . O 6 HOH A 68 417 417 HOH TIP . O 6 HOH A 69 418 418 HOH TIP . O 6 HOH A 70 419 419 HOH TIP . O 6 HOH A 71 421 421 HOH TIP . O 6 HOH A 72 422 422 HOH TIP . O 6 HOH A 73 423 423 HOH TIP . O 6 HOH A 74 425 425 HOH TIP . O 6 HOH A 75 426 426 HOH TIP . O 6 HOH A 76 428 428 HOH TIP . O 6 HOH A 77 429 429 HOH TIP . O 6 HOH A 78 430 430 HOH TIP . O 6 HOH A 79 431 431 HOH TIP . O 6 HOH A 80 432 432 HOH TIP . O 6 HOH A 81 433 433 HOH TIP . O 6 HOH A 82 437 437 HOH TIP . O 6 HOH A 83 438 438 HOH TIP . O 6 HOH A 84 439 439 HOH TIP . O 6 HOH A 85 440 440 HOH TIP . O 6 HOH A 86 441 441 HOH TIP . O 6 HOH A 87 443 443 HOH TIP . O 6 HOH A 88 444 444 HOH TIP . O 6 HOH A 89 445 445 HOH TIP . O 6 HOH A 90 446 446 HOH TIP . O 6 HOH A 91 449 449 HOH TIP . O 6 HOH A 92 452 452 HOH TIP . O 6 HOH A 93 453 453 HOH TIP . O 6 HOH A 94 455 455 HOH TIP . O 6 HOH A 95 456 456 HOH TIP . O 6 HOH A 96 457 457 HOH TIP . O 6 HOH A 97 458 458 HOH TIP . O 6 HOH A 98 459 459 HOH TIP . O 6 HOH A 99 462 462 HOH TIP . O 6 HOH A 100 463 463 HOH TIP . O 6 HOH A 101 464 464 HOH TIP . O 6 HOH A 102 465 465 HOH TIP . O 6 HOH A 103 468 468 HOH TIP . O 6 HOH A 104 470 470 HOH TIP . O 6 HOH A 105 471 471 HOH TIP . O 6 HOH A 106 472 472 HOH TIP . O 6 HOH A 107 474 474 HOH TIP . O 6 HOH A 108 475 475 HOH TIP . O 6 HOH A 109 477 477 HOH TIP . O 6 HOH A 110 478 478 HOH TIP . O 6 HOH A 111 479 479 HOH TIP . O 6 HOH A 112 480 480 HOH TIP . O 6 HOH A 113 481 481 HOH TIP . O 6 HOH A 114 485 485 HOH TIP . O 6 HOH A 115 486 486 HOH TIP . O 6 HOH A 116 487 487 HOH TIP . O 6 HOH A 117 488 488 HOH TIP . O 6 HOH A 118 492 492 HOH TIP . O 6 HOH A 119 495 495 HOH TIP . O 6 HOH A 120 497 497 HOH TIP . O 6 HOH A 121 498 498 HOH TIP . O 6 HOH A 122 500 500 HOH TIP . O 6 HOH A 123 501 501 HOH TIP . O 6 HOH A 124 503 503 HOH TIP . O 6 HOH A 125 504 504 HOH TIP . O 6 HOH A 126 509 509 HOH TIP . O 6 HOH A 127 510 510 HOH TIP . O 6 HOH A 128 511 511 HOH TIP . O 6 HOH A 129 512 512 HOH TIP . O 6 HOH A 130 515 515 HOH TIP . O 6 HOH A 131 518 518 HOH TIP . O 6 HOH A 132 519 519 HOH TIP . O 6 HOH A 133 520 520 HOH TIP . O 6 HOH A 134 521 521 HOH TIP . O 6 HOH A 135 525 525 HOH TIP . O 6 HOH A 136 526 526 HOH TIP . O 6 HOH A 137 527 527 HOH TIP . O 6 HOH A 138 528 528 HOH TIP . O 6 HOH A 139 531 531 HOH TIP . O 6 HOH A 140 532 532 HOH TIP . O 6 HOH A 141 533 533 HOH TIP . O 6 HOH A 142 538 538 HOH TIP . O 6 HOH A 143 542 542 HOH TIP . P 6 HOH B 1 304 304 HOH TIP . P 6 HOH B 2 306 306 HOH TIP . P 6 HOH B 3 311 311 HOH TIP . P 6 HOH B 4 312 312 HOH TIP . P 6 HOH B 5 313 313 HOH TIP . P 6 HOH B 6 314 314 HOH TIP . P 6 HOH B 7 315 315 HOH TIP . P 6 HOH B 8 317 317 HOH TIP . P 6 HOH B 9 319 319 HOH TIP . P 6 HOH B 10 323 323 HOH TIP . P 6 HOH B 11 327 327 HOH TIP . P 6 HOH B 12 332 332 HOH TIP . P 6 HOH B 13 339 339 HOH TIP . P 6 HOH B 14 342 342 HOH TIP . P 6 HOH B 15 343 343 HOH TIP . P 6 HOH B 16 345 345 HOH TIP . P 6 HOH B 17 347 347 HOH TIP . P 6 HOH B 18 349 349 HOH TIP . P 6 HOH B 19 350 350 HOH TIP . P 6 HOH B 20 351 351 HOH TIP . P 6 HOH B 21 352 352 HOH TIP . P 6 HOH B 22 353 353 HOH TIP . P 6 HOH B 23 358 358 HOH TIP . P 6 HOH B 24 362 362 HOH TIP . P 6 HOH B 25 363 363 HOH TIP . P 6 HOH B 26 365 365 HOH TIP . P 6 HOH B 27 366 366 HOH TIP . P 6 HOH B 28 369 369 HOH TIP . P 6 HOH B 29 370 370 HOH TIP . P 6 HOH B 30 371 371 HOH TIP . P 6 HOH B 31 372 372 HOH TIP . P 6 HOH B 32 374 374 HOH TIP . P 6 HOH B 33 377 377 HOH TIP . P 6 HOH B 34 379 379 HOH TIP . P 6 HOH B 35 381 381 HOH TIP . P 6 HOH B 36 386 386 HOH TIP . P 6 HOH B 37 387 387 HOH TIP . P 6 HOH B 38 389 389 HOH TIP . P 6 HOH B 39 390 390 HOH TIP . P 6 HOH B 40 391 391 HOH TIP . P 6 HOH B 41 392 392 HOH TIP . P 6 HOH B 42 395 395 HOH TIP . P 6 HOH B 43 396 396 HOH TIP . P 6 HOH B 44 397 397 HOH TIP . P 6 HOH B 45 398 398 HOH TIP . P 6 HOH B 46 399 399 HOH TIP . P 6 HOH B 47 404 404 HOH TIP . P 6 HOH B 48 405 405 HOH TIP . P 6 HOH B 49 415 415 HOH TIP . P 6 HOH B 50 420 420 HOH TIP . P 6 HOH B 51 424 424 HOH TIP . P 6 HOH B 52 427 427 HOH TIP . P 6 HOH B 53 434 434 HOH TIP . P 6 HOH B 54 435 435 HOH TIP . P 6 HOH B 55 436 436 HOH TIP . P 6 HOH B 56 442 442 HOH TIP . P 6 HOH B 57 447 447 HOH TIP . P 6 HOH B 58 448 448 HOH TIP . P 6 HOH B 59 450 450 HOH TIP . P 6 HOH B 60 451 451 HOH TIP . P 6 HOH B 61 454 454 HOH TIP . P 6 HOH B 62 460 460 HOH TIP . P 6 HOH B 63 461 461 HOH TIP . P 6 HOH B 64 466 466 HOH TIP . P 6 HOH B 65 467 467 HOH TIP . P 6 HOH B 66 469 469 HOH TIP . P 6 HOH B 67 473 473 HOH TIP . P 6 HOH B 68 476 476 HOH TIP . P 6 HOH B 69 482 482 HOH TIP . P 6 HOH B 70 483 483 HOH TIP . P 6 HOH B 71 484 484 HOH TIP . P 6 HOH B 72 489 489 HOH TIP . P 6 HOH B 73 490 490 HOH TIP . P 6 HOH B 74 491 491 HOH TIP . P 6 HOH B 75 493 493 HOH TIP . P 6 HOH B 76 494 494 HOH TIP . P 6 HOH B 77 496 496 HOH TIP . P 6 HOH B 78 499 499 HOH TIP . P 6 HOH B 79 502 502 HOH TIP . P 6 HOH B 80 505 505 HOH TIP . P 6 HOH B 81 506 506 HOH TIP . P 6 HOH B 82 507 507 HOH TIP . P 6 HOH B 83 508 508 HOH TIP . P 6 HOH B 84 513 513 HOH TIP . P 6 HOH B 85 514 514 HOH TIP . P 6 HOH B 86 516 516 HOH TIP . P 6 HOH B 87 517 517 HOH TIP . P 6 HOH B 88 522 522 HOH TIP . P 6 HOH B 89 523 523 HOH TIP . P 6 HOH B 90 524 524 HOH TIP . P 6 HOH B 91 529 529 HOH TIP . P 6 HOH B 92 530 530 HOH TIP . P 6 HOH B 93 534 534 HOH TIP . P 6 HOH B 94 535 535 HOH TIP . P 6 HOH B 95 536 536 HOH TIP . P 6 HOH B 96 537 537 HOH TIP . P 6 HOH B 97 539 539 HOH TIP . P 6 HOH B 98 540 540 HOH TIP . P 6 HOH B 99 541 541 HOH TIP . P 6 HOH B 100 543 543 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 4 21.138 18.393 9.291 1 45.38 ? C1 GOL 207 B 1 HETATM 2 O O1 GOL . . . L 4 22.254 18.83 8.586 1 45.64 ? O1 GOL 207 B 1 HETATM 3 C C2 GOL . . . L 4 21.68 17.263 10.159 1 45.46 ? C2 GOL 207 B 1 HETATM 4 O O2 GOL . . . L 4 20.52 16.42 10.338 1 48.04 ? O2 GOL 207 B 1 HETATM 5 C C3 GOL . . . L 4 22.06 17.881 11.533 1 46.01 ? C3 GOL 207 B 1 HETATM 6 O O3 GOL . . . L 4 22.384 16.787 12.423 1 49.21 ? O3 GOL 207 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #