data_1K2Z # _model_server_result.job_id H6s8A74pp3QEsq0xweLKSA _model_server_result.datetime_utc '2024-10-18 13:21:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k2z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":21}' # _entry.id 1K2Z # _exptl.entry_id 1K2Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 481.508 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DISTAMYCIN A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1K2Z _cell.length_a 26.106 _cell.length_b 40.928 _cell.length_c 53.138 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K2Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 4 A DC 4 1_555 B N1 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 4 A DC 4 1_555 B O6 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 4 A DC 4 1_555 B N2 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 DT 7 A DT 7 1_555 B N6 DA 6 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DG 9 A DG 9 1_555 B N3 DC 4 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N2 DG 9 A DG 9 1_555 B O2 DC 4 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O6 DG 9 A DG 9 1_555 B N4 DC 4 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C22 H27 N9 O4' _chem_comp.formula_weight 481.508 _chem_comp.id DMY _chem_comp.mon_nstd_flag . _chem_comp.name 'DISTAMYCIN A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DISTAMYCIN;STALLIMYCIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 DMY doub 113 n n C1 N1 DMY sing 114 n n C1 H1 DMY sing 115 n n N1 C2 DMY sing 116 n n N1 HN1 DMY sing 117 n n C2 C3 DMY sing 118 n y C2 C5 DMY doub 119 n y C3 C4 DMY doub 120 n y C3 H3 DMY sing 121 n n C4 N2 DMY sing 122 n y C4 C7 DMY sing 123 n n N2 C5 DMY sing 124 n y N2 C6 DMY sing 125 n n C5 H5 DMY sing 126 n n C6 H61 DMY sing 127 n n C6 H62 DMY sing 128 n n C6 H63 DMY sing 129 n n C7 O2 DMY doub 130 n n C7 N3 DMY sing 131 n n N3 C8 DMY sing 132 n n N3 HN3 DMY sing 133 n n C8 C9 DMY sing 134 n y C8 C11 DMY doub 135 n y C9 C10 DMY doub 136 n y C9 H9 DMY sing 137 n n C10 N4 DMY sing 138 n y C10 C13 DMY sing 139 n n N4 C11 DMY sing 140 n y N4 C12 DMY sing 141 n n C11 H11 DMY sing 142 n n C12 H121 DMY sing 143 n n C12 H122 DMY sing 144 n n C12 H123 DMY sing 145 n n C13 O3 DMY doub 146 n n C13 N5 DMY sing 147 n n N5 C14 DMY sing 148 n n N5 HN5 DMY sing 149 n n C14 C15 DMY sing 150 n y C14 C17 DMY doub 151 n y C15 C16 DMY doub 152 n y C15 H15 DMY sing 153 n n C16 N6 DMY sing 154 n y C16 C19 DMY sing 155 n n N6 C17 DMY sing 156 n y N6 C18 DMY sing 157 n n C17 H17 DMY sing 158 n n C18 H181 DMY sing 159 n n C18 H182 DMY sing 160 n n C18 H183 DMY sing 161 n n C19 O4 DMY doub 162 n n C19 N7 DMY sing 163 n n N7 C20 DMY sing 164 n n N7 HN7 DMY sing 165 n n C20 C21 DMY sing 166 n n C20 H201 DMY sing 167 n n C20 H202 DMY sing 168 n n C21 C22 DMY sing 169 n n C21 H211 DMY sing 170 n n C21 H212 DMY sing 171 n n C22 N8 DMY doub 172 n n C22 N9 DMY sing 173 n n N8 HN8 DMY sing 174 n n N9 HN91 DMY sing 175 n n N9 HN92 DMY sing 176 n n # _atom_sites.entry_id 1K2Z _atom_sites.fract_transf_matrix[1][1] 0.038305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024433 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018819 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMY A 1 21 -99999 DMY DMY . D 3 HOH A 1 22 -99999 HOH HOH . D 3 HOH A 2 23 -99999 HOH HOH . D 3 HOH A 3 25 -99999 HOH HOH . D 3 HOH A 4 28 -99999 HOH HOH . D 3 HOH A 5 31 -99999 HOH HOH . D 3 HOH A 6 33 -99999 HOH HOH . D 3 HOH A 7 34 -99999 HOH HOH . D 3 HOH A 8 35 -99999 HOH HOH . D 3 HOH A 9 36 -99999 HOH HOH . D 3 HOH A 10 39 -99999 HOH HOH . D 3 HOH A 11 41 -99999 HOH HOH . D 3 HOH A 12 43 -99999 HOH HOH . D 3 HOH A 13 44 -99999 HOH HOH . D 3 HOH A 14 46 -99999 HOH HOH . D 3 HOH A 15 51 -99999 HOH HOH . D 3 HOH A 16 52 -99999 HOH HOH . D 3 HOH A 17 54 -99999 HOH HOH . D 3 HOH A 18 56 -99999 HOH HOH . D 3 HOH A 19 57 -99999 HOH HOH . D 3 HOH A 20 61 -99999 HOH HOH . D 3 HOH A 21 63 -99999 HOH HOH . D 3 HOH A 22 64 -99999 HOH HOH . D 3 HOH A 23 66 -99999 HOH HOH . D 3 HOH A 24 67 -99999 HOH HOH . E 3 HOH B 1 24 -99999 HOH HOH . E 3 HOH B 2 26 -99999 HOH HOH . E 3 HOH B 3 27 -99999 HOH HOH . E 3 HOH B 4 29 -99999 HOH HOH . E 3 HOH B 5 30 -99999 HOH HOH . E 3 HOH B 6 32 -99999 HOH HOH . E 3 HOH B 7 37 -99999 HOH HOH . E 3 HOH B 8 38 -99999 HOH HOH . E 3 HOH B 9 40 -99999 HOH HOH . E 3 HOH B 10 42 -99999 HOH HOH . E 3 HOH B 11 45 -99999 HOH HOH . E 3 HOH B 12 47 -99999 HOH HOH . E 3 HOH B 13 48 -99999 HOH HOH . E 3 HOH B 14 49 -99999 HOH HOH . E 3 HOH B 15 50 -99999 HOH HOH . E 3 HOH B 16 53 -99999 HOH HOH . E 3 HOH B 17 55 -99999 HOH HOH . E 3 HOH B 18 58 -99999 HOH HOH . E 3 HOH B 19 59 -99999 HOH HOH . E 3 HOH B 20 60 -99999 HOH HOH . E 3 HOH B 21 62 -99999 HOH HOH . E 3 HOH B 22 65 -99999 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMY . . . C 2 2.638 14.837 22.002 1 78.89 ? C1 DMY 21 A 1 HETATM 2 O O1 DMY . . . C 2 1.807 13.972 22.188 1 95.76 ? O1 DMY 21 A 1 HETATM 3 N N1 DMY . . . C 2 2.629 15.641 20.938 1 75.63 ? N1 DMY 21 A 1 HETATM 4 C C2 DMY . . . C 2 1.704 16.557 20.535 1 77.12 ? C2 DMY 21 A 1 HETATM 5 C C3 DMY . . . C 2 2.025 17.899 20.181 1 80.12 ? C3 DMY 21 A 1 HETATM 6 C C4 DMY . . . C 2 0.896 18.439 19.578 1 94.93 ? C4 DMY 21 A 1 HETATM 7 N N2 DMY . . . C 2 -0.163 17.657 20.059 1 113.55 ? N2 DMY 21 A 1 HETATM 8 C C5 DMY . . . C 2 0.338 16.484 20.488 1 98.74 ? C5 DMY 21 A 1 HETATM 9 C C6 DMY . . . C 2 -1.594 17.916 19.99 1 127.33 ? C6 DMY 21 A 1 HETATM 10 C C7 DMY . . . C 2 0.634 19.681 18.883 1 86.78 ? C7 DMY 21 A 1 HETATM 11 O O2 DMY . . . C 2 -0.463 20.279 19.001 1 104.75 ? O2 DMY 21 A 1 HETATM 12 N N3 DMY . . . C 2 1.479 20.004 17.907 1 63.52 ? N3 DMY 21 A 1 HETATM 13 C C8 DMY . . . C 2 1.452 21.229 17.188 1 54.2 ? C8 DMY 21 A 1 HETATM 14 C C9 DMY . . . C 2 2.461 21.719 16.392 1 66.36 ? C9 DMY 21 A 1 HETATM 15 C C10 DMY . . . C 2 2.051 22.936 15.906 1 57.82 ? C10 DMY 21 A 1 HETATM 16 N N4 DMY . . . C 2 0.797 23.15 16.353 1 58.43 ? N4 DMY 21 A 1 HETATM 17 C C11 DMY . . . C 2 0.342 21.989 16.936 1 56.07 ? C11 DMY 21 A 1 HETATM 18 C C12 DMY . . . C 2 0.004 24.354 16.265 1 67.5 ? C12 DMY 21 A 1 HETATM 19 C C13 DMY . . . C 2 2.717 23.896 14.989 1 65.44 ? C13 DMY 21 A 1 HETATM 20 O O3 DMY . . . C 2 2.184 24.96 14.624 1 75 ? O3 DMY 21 A 1 HETATM 21 N N5 DMY . . . C 2 3.989 23.637 14.718 1 47.25 ? N5 DMY 21 A 1 HETATM 22 C C14 DMY . . . C 2 4.816 24.546 13.971 1 51.99 ? C14 DMY 21 A 1 HETATM 23 C C15 DMY . . . C 2 5.877 24.117 13.143 1 62.14 ? C15 DMY 21 A 1 HETATM 24 C C16 DMY . . . C 2 6.389 25.243 12.506 1 63.55 ? C16 DMY 21 A 1 HETATM 25 N N6 DMY . . . C 2 5.698 26.338 13.041 1 70.04 ? N6 DMY 21 A 1 HETATM 26 C C17 DMY . . . C 2 4.692 25.889 13.813 1 59.71 ? C17 DMY 21 A 1 HETATM 27 C C18 DMY . . . C 2 5.898 27.758 12.779 1 92.18 ? C18 DMY 21 A 1 HETATM 28 C C19 DMY . . . C 2 7.613 25.461 11.765 1 78.23 ? C19 DMY 21 A 1 HETATM 29 O O4 DMY . . . C 2 8.085 26.567 11.502 1 96.54 ? O4 DMY 21 A 1 HETATM 30 N N7 DMY . . . C 2 8.398 24.367 11.65 1 79.97 ? N7 DMY 21 A 1 HETATM 31 C C20 DMY . . . C 2 9.844 24.521 11.363 1 81.96 ? C20 DMY 21 A 1 HETATM 32 C C21 DMY . . . C 2 10.183 24.196 9.939 1 76.94 ? C21 DMY 21 A 1 HETATM 33 C C22 DMY . . . C 2 11.68 23.952 9.762 1 90.69 ? C22 DMY 21 A 1 HETATM 34 N N8 DMY . . . C 2 12.467 24.979 9.623 1 122.28 ? N8 DMY 21 A 1 HETATM 35 N N9 DMY . . . C 2 12.188 22.783 10.126 1 97.87 ? N9 DMY 21 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #