data_1K3S # _model_server_result.job_id wMe1IM-ObSHqx9UtFEsbpg _model_server_result.datetime_utc '2025-02-28 14:23:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k3s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":114}' # _entry.id 1K3S # _exptl.entry_id 1K3S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1K3S _cell.length_a 44.497 _cell.length_b 48.725 _cell.length_c 94.532 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K3S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N GLU 2 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C GLU 41 A GLU 41 1_555 A N MSE 42 A MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C MSE 42 A MSE 42 1_555 A N CYS 43 A CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C PHE 46 A PHE 46 1_555 A N MSE 47 A MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C MSE 47 A MSE 47 1_555 A N PRO 48 A PRO 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale6 B C GLU 41 B GLU 41 1_555 B N MSE 42 B MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 B C MSE 42 B MSE 42 1_555 B N CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 B C PHE 46 B PHE 46 1_555 B N MSE 47 B MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 B C MSE 47 B MSE 47 1_555 B N PRO 48 B PRO 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 279 n n P O2 PO4 sing 280 n n P O3 PO4 sing 281 n n P O4 PO4 sing 282 n n # _atom_sites.entry_id 1K3S _atom_sites.fract_transf_matrix[1][1] 0.022473 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010578 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 114 2 PO4 PO4 . D 3 HOH A 1 115 1 HOH H2O . D 3 HOH A 2 116 2 HOH H2O . D 3 HOH A 3 117 3 HOH H2O . D 3 HOH A 4 118 4 HOH H2O . D 3 HOH A 5 119 5 HOH H2O . D 3 HOH A 6 120 6 HOH H2O . D 3 HOH A 7 121 9 HOH H2O . D 3 HOH A 8 122 10 HOH H2O . D 3 HOH A 9 123 11 HOH H2O . D 3 HOH A 10 124 12 HOH H2O . D 3 HOH A 11 125 13 HOH H2O . D 3 HOH A 12 126 14 HOH H2O . D 3 HOH A 13 127 15 HOH H2O . D 3 HOH A 14 128 16 HOH H2O . D 3 HOH A 15 129 17 HOH H2O . D 3 HOH A 16 130 20 HOH H2O . D 3 HOH A 17 131 22 HOH H2O . D 3 HOH A 18 132 23 HOH H2O . D 3 HOH A 19 133 26 HOH H2O . D 3 HOH A 20 134 28 HOH H2O . D 3 HOH A 21 135 29 HOH H2O . D 3 HOH A 22 136 31 HOH H2O . D 3 HOH A 23 137 35 HOH H2O . D 3 HOH A 24 138 36 HOH H2O . D 3 HOH A 25 139 39 HOH H2O . D 3 HOH A 26 140 40 HOH H2O . D 3 HOH A 27 141 41 HOH H2O . D 3 HOH A 28 142 42 HOH H2O . D 3 HOH A 29 143 45 HOH H2O . D 3 HOH A 30 144 46 HOH H2O . D 3 HOH A 31 145 47 HOH H2O . E 3 HOH B 1 114 7 HOH H2O . E 3 HOH B 2 115 8 HOH H2O . E 3 HOH B 3 116 18 HOH H2O . E 3 HOH B 4 117 19 HOH H2O . E 3 HOH B 5 118 21 HOH H2O . E 3 HOH B 6 119 24 HOH H2O . E 3 HOH B 7 120 25 HOH H2O . E 3 HOH B 8 121 27 HOH H2O . E 3 HOH B 9 122 30 HOH H2O . E 3 HOH B 10 123 32 HOH H2O . E 3 HOH B 11 124 33 HOH H2O . E 3 HOH B 12 125 34 HOH H2O . E 3 HOH B 13 126 37 HOH H2O . E 3 HOH B 14 127 38 HOH H2O . E 3 HOH B 15 128 43 HOH H2O . E 3 HOH B 16 129 44 HOH H2O . E 3 HOH B 17 130 48 HOH H2O . E 3 HOH B 18 131 49 HOH H2O . E 3 HOH B 19 132 50 HOH H2O . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 2 -22.654 0.089 -5.455 1 53.99 ? P PO4 114 A 1 HETATM 2 O O1 PO4 . . . C 2 -22.529 -0.997 -4.453 1 56.6 ? O1 PO4 114 A 1 HETATM 3 O O2 PO4 . . . C 2 -21.773 1.222 -5.072 1 55.14 ? O2 PO4 114 A 1 HETATM 4 O O3 PO4 . . . C 2 -24.063 0.553 -5.506 1 57.48 ? O3 PO4 114 A 1 HETATM 5 O O4 PO4 . . . C 2 -22.252 -0.422 -6.789 1 56.68 ? O4 PO4 114 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #