data_1K59 # _model_server_result.job_id PkwSQg7qyl0lLwPMyfu58g _model_server_result.datetime_utc '2024-11-27 04:33:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k59 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1071}' # _entry.id 1K59 # _exptl.entry_id 1K59 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1K59 _cell.length_a 86.65 _cell.length_b 37.63 _cell.length_c 38.78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K59 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 39 A CYS 39 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf3 A SG CYS 57 A CYS 57 1_555 A SG CYS 107 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A C PCA 1 A PCA 1 1_555 A N ASP 2 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 1K59 _atom_sites.fract_transf_matrix[1][1] 0.011541 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026575 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 1071 1071 CIT CIT . C 3 HOH A 1 1001 1001 HOH WAT . C 3 HOH A 2 1002 1002 HOH WAT . C 3 HOH A 3 1003 1003 HOH WAT . C 3 HOH A 4 1004 1004 HOH WAT . C 3 HOH A 5 1005 1005 HOH WAT . C 3 HOH A 6 1006 1006 HOH WAT . C 3 HOH A 7 1007 1007 HOH WAT . C 3 HOH A 8 1008 1008 HOH WAT . C 3 HOH A 9 1009 1009 HOH WAT . C 3 HOH A 10 1010 1010 HOH WAT . C 3 HOH A 11 1011 1011 HOH WAT . C 3 HOH A 12 1012 1012 HOH WAT . C 3 HOH A 13 1013 1013 HOH WAT . C 3 HOH A 14 1014 1014 HOH WAT . C 3 HOH A 15 1015 1015 HOH WAT . C 3 HOH A 16 1016 1016 HOH WAT . C 3 HOH A 17 1017 1017 HOH WAT . C 3 HOH A 18 1018 1018 HOH WAT . C 3 HOH A 19 1019 1019 HOH WAT . C 3 HOH A 20 1020 1020 HOH WAT . C 3 HOH A 21 1021 1021 HOH WAT . C 3 HOH A 22 1022 1022 HOH WAT . C 3 HOH A 23 1023 1023 HOH WAT . C 3 HOH A 24 1024 1024 HOH WAT . C 3 HOH A 25 1025 1025 HOH WAT . C 3 HOH A 26 1026 1026 HOH WAT . C 3 HOH A 27 1027 1027 HOH WAT . C 3 HOH A 28 1028 1028 HOH WAT . C 3 HOH A 29 1029 1029 HOH WAT . C 3 HOH A 30 1030 1030 HOH WAT . C 3 HOH A 31 1031 1031 HOH WAT . C 3 HOH A 32 1032 1032 HOH WAT . C 3 HOH A 33 1033 1033 HOH WAT . C 3 HOH A 34 1034 1034 HOH WAT . C 3 HOH A 35 1035 1035 HOH WAT . C 3 HOH A 36 1036 1036 HOH WAT . C 3 HOH A 37 1037 1037 HOH WAT . C 3 HOH A 38 1038 1038 HOH WAT . C 3 HOH A 39 1039 1039 HOH WAT . C 3 HOH A 40 1040 1040 HOH WAT . C 3 HOH A 41 1041 1041 HOH WAT . C 3 HOH A 42 1042 1042 HOH WAT . C 3 HOH A 43 1043 1043 HOH WAT . C 3 HOH A 44 1044 1044 HOH WAT . C 3 HOH A 45 1045 1045 HOH WAT . C 3 HOH A 46 1046 1046 HOH WAT . C 3 HOH A 47 1047 1047 HOH WAT . C 3 HOH A 48 1048 1048 HOH WAT . C 3 HOH A 49 1049 1049 HOH WAT . C 3 HOH A 50 1050 1050 HOH WAT . C 3 HOH A 51 1051 1051 HOH WAT . C 3 HOH A 52 1052 1052 HOH WAT . C 3 HOH A 53 1053 1053 HOH WAT . C 3 HOH A 54 1054 1054 HOH WAT . C 3 HOH A 55 1055 1055 HOH WAT . C 3 HOH A 56 1056 1056 HOH WAT . C 3 HOH A 57 1057 1057 HOH WAT . C 3 HOH A 58 1058 1058 HOH WAT . C 3 HOH A 59 1059 1059 HOH WAT . C 3 HOH A 60 1060 1060 HOH WAT . C 3 HOH A 61 1061 1061 HOH WAT . C 3 HOH A 62 1062 1062 HOH WAT . C 3 HOH A 63 1063 1063 HOH WAT . C 3 HOH A 64 1064 1064 HOH WAT . C 3 HOH A 65 1065 1065 HOH WAT . C 3 HOH A 66 1066 1066 HOH WAT . C 3 HOH A 67 1067 1067 HOH WAT . C 3 HOH A 68 1068 1068 HOH WAT . C 3 HOH A 69 1069 1069 HOH WAT . C 3 HOH A 70 1070 1070 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . B 2 -1.923 15.709 13.689 1 39.84 ? C1 CIT 1071 A 1 HETATM 2 O O1 CIT . . . B 2 -0.729 15.532 13.465 1 38.59 ? O1 CIT 1071 A 1 HETATM 3 O O2 CIT . . . B 2 -2.31 16.644 14.35 1 47.01 ? O2 CIT 1071 A 1 HETATM 4 C C2 CIT . . . B 2 -2.996 14.81 13.191 1 42.67 ? C2 CIT 1071 A 1 HETATM 5 C C3 CIT . . . B 2 -2.645 13.895 12.072 1 43.28 ? C3 CIT 1071 A 1 HETATM 6 O O7 CIT . . . B 2 -2.349 14.582 10.865 1 36.4 ? O7 CIT 1071 A 1 HETATM 7 C C4 CIT . . . B 2 -4.038 13.383 11.876 1 41.5 ? C4 CIT 1071 A 1 HETATM 8 C C5 CIT . . . B 2 -3.875 12.063 11.232 1 41.4 ? C5 CIT 1071 A 1 HETATM 9 O O3 CIT . . . B 2 -3.385 11.999 10.083 1 37.69 ? O3 CIT 1071 A 1 HETATM 10 O O4 CIT . . . B 2 -4.08 11.103 11.996 1 43.08 ? O4 CIT 1071 A 1 HETATM 11 C C6 CIT . . . B 2 -1.476 12.882 12.565 1 46.79 ? C6 CIT 1071 A 1 HETATM 12 O O5 CIT . . . B 2 -0.204 13.069 11.997 1 54.21 ? O5 CIT 1071 A 1 HETATM 13 O O6 CIT . . . B 2 -1.726 11.841 13.536 1 54.8 ? O6 CIT 1071 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #