data_1K6C # _model_server_result.job_id QFYPtTo6FtlAC0G6xND62A _model_server_result.datetime_utc '2024-11-04 22:40:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":902}' # _entry.id 1K6C # _exptl.entry_id 1K6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 613.789 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1K6C _cell.length_a 51.45 _cell.length_b 59.4 _cell.length_c 61.74 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C36 H47 N5 O4' _chem_comp.formula_weight 613.789 _chem_comp.id MK1 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms INDINAVIR # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 MK1 sing 243 n n N1 C9 MK1 sing 244 n n N1 C31 MK1 sing 245 n n C1 C2 MK1 sing 246 n n C1 H11A MK1 sing 247 n n C1 H12 MK1 sing 248 n n C2 C3 MK1 sing 249 n n C2 N3 MK1 sing 250 n n C2 H2 MK1 sing 251 n n C3 O1 MK1 doub 252 n n C3 N2 MK1 sing 253 n n N2 C4 MK1 sing 254 n n N2 HN2 MK1 sing 255 n n C4 C5 MK1 sing 256 n n C4 C6 MK1 sing 257 n n C4 C7 MK1 sing 258 n n C5 H51 MK1 sing 259 n n C5 H52 MK1 sing 260 n n C5 H53 MK1 sing 261 n n C6 H61 MK1 sing 262 n n C6 H62 MK1 sing 263 n n C6 H63 MK1 sing 264 n n C7 H71 MK1 sing 265 n n C7 H72 MK1 sing 266 n n C7 H73 MK1 sing 267 n n N3 C8 MK1 sing 268 n n N3 C10 MK1 sing 269 n n C8 C9 MK1 sing 270 n n C8 H81 MK1 sing 271 n n C8 H82 MK1 sing 272 n n C9 H91 MK1 sing 273 n n C9 H92 MK1 sing 274 n n C10 C11 MK1 sing 275 n n C10 H101 MK1 sing 276 n n C10 H102 MK1 sing 277 n n C11 O2 MK1 sing 278 n n C11 C12 MK1 sing 279 n n C11 H11 MK1 sing 280 n n O2 HO2 MK1 sing 281 n n C12 C13 MK1 sing 282 n n C12 H121 MK1 sing 283 n n C12 H122 MK1 sing 284 n n C13 C14 MK1 sing 285 n n C13 C21 MK1 sing 286 n n C13 H13 MK1 sing 287 n n C14 C15 MK1 sing 288 n n C14 H141 MK1 sing 289 n n C14 H142 MK1 sing 290 n n C15 C16 MK1 doub 291 n y C15 C20 MK1 sing 292 n y C16 C17 MK1 sing 293 n y C16 H16 MK1 sing 294 n n C17 C18 MK1 doub 295 n y C17 H17 MK1 sing 296 n n C18 C19 MK1 sing 297 n y C18 H18 MK1 sing 298 n n C19 C20 MK1 doub 299 n y C19 H19 MK1 sing 300 n n C20 H20 MK1 sing 301 n n C21 O3 MK1 doub 302 n n C21 N4 MK1 sing 303 n n N4 C22 MK1 sing 304 n n N4 HN4 MK1 sing 305 n n C22 C23 MK1 sing 306 n n C22 C30 MK1 sing 307 n n C22 H22 MK1 sing 308 n n C23 O4 MK1 sing 309 n n C23 C24 MK1 sing 310 n n C23 H23 MK1 sing 311 n n O4 HO4 MK1 sing 312 n n C24 C25 MK1 sing 313 n n C24 H241 MK1 sing 314 n n C24 H242 MK1 sing 315 n n C25 C26 MK1 doub 316 n y C25 C30 MK1 sing 317 n y C26 C27 MK1 sing 318 n y C26 H26 MK1 sing 319 n n C27 C28 MK1 doub 320 n y C27 H27 MK1 sing 321 n n C28 C29 MK1 sing 322 n y C28 H28 MK1 sing 323 n n C29 C30 MK1 doub 324 n y C29 H29 MK1 sing 325 n n C31 C32 MK1 sing 326 n n C31 H311 MK1 sing 327 n n C31 H312 MK1 sing 328 n n C32 C33 MK1 sing 329 n y C32 C36 MK1 doub 330 n y C33 N5 MK1 doub 331 n y C33 H33 MK1 sing 332 n n N5 C34 MK1 sing 333 n y C34 C35 MK1 doub 334 n y C34 H34 MK1 sing 335 n n C35 C36 MK1 sing 336 n y C35 H35 MK1 sing 337 n n C36 H36 MK1 sing 338 n n # _atom_sites.entry_id 1K6C _atom_sites.fract_transf_matrix[1][1] 0.019438 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 501 501 ACT ACT . D 2 ACT A 1 503 503 ACT ACT . E 2 ACT B 1 502 502 ACT ACT . F 2 ACT B 1 504 504 ACT ACT . G 2 ACT B 1 506 506 ACT ACT . H 3 MK1 B 1 902 902 MK1 MK1 . I 4 HOH A 1 504 3 HOH HOH . I 4 HOH A 2 505 7 HOH HOH . I 4 HOH A 3 506 8 HOH HOH . I 4 HOH A 4 507 21 HOH HOH . I 4 HOH A 5 508 26 HOH HOH . I 4 HOH A 6 509 35 HOH HOH . I 4 HOH A 7 510 44 HOH HOH . I 4 HOH A 8 511 52 HOH HOH . I 4 HOH A 9 512 154 HOH HOH . I 4 HOH A 10 513 157 HOH HOH . I 4 HOH A 11 514 161 HOH HOH . I 4 HOH A 12 515 172 HOH HOH . I 4 HOH A 13 516 174 HOH HOH . I 4 HOH A 14 517 192 HOH HOH . I 4 HOH A 15 518 229 HOH HOH . I 4 HOH A 16 519 231 HOH HOH . I 4 HOH A 17 520 258 HOH HOH . I 4 HOH A 18 521 259 HOH HOH . I 4 HOH A 19 522 271 HOH HOH . I 4 HOH A 20 523 272 HOH HOH . I 4 HOH A 21 524 273 HOH HOH . I 4 HOH A 22 525 274 HOH HOH . I 4 HOH A 23 526 275 HOH HOH . I 4 HOH A 24 527 276 HOH HOH . I 4 HOH A 25 528 277 HOH HOH . I 4 HOH A 26 529 278 HOH HOH . I 4 HOH A 27 530 279 HOH HOH . I 4 HOH A 28 531 286 HOH HOH . I 4 HOH A 29 532 287 HOH HOH . I 4 HOH A 30 533 288 HOH HOH . I 4 HOH A 31 534 290 HOH HOH . I 4 HOH A 32 535 291 HOH HOH . I 4 HOH A 33 536 292 HOH HOH . I 4 HOH A 34 537 293 HOH HOH . I 4 HOH A 35 538 298 HOH HOH . I 4 HOH A 36 539 299 HOH HOH . I 4 HOH A 37 540 300 HOH HOH . I 4 HOH A 38 541 314 HOH HOH . I 4 HOH A 39 542 315 HOH HOH . I 4 HOH A 40 543 316 HOH HOH . I 4 HOH A 41 544 317 HOH HOH . I 4 HOH A 42 545 318 HOH HOH . I 4 HOH A 43 546 319 HOH HOH . I 4 HOH A 44 547 326 HOH HOH . I 4 HOH A 45 548 327 HOH HOH . I 4 HOH A 46 549 328 HOH HOH . I 4 HOH A 47 550 329 HOH HOH . I 4 HOH A 48 551 330 HOH HOH . I 4 HOH A 49 552 332 HOH HOH . I 4 HOH A 50 553 334 HOH HOH . J 4 HOH B 1 903 1 HOH HOH . J 4 HOH B 2 904 4 HOH HOH . J 4 HOH B 3 905 5 HOH HOH . J 4 HOH B 4 906 11 HOH HOH . J 4 HOH B 5 907 13 HOH HOH . J 4 HOH B 6 908 24 HOH HOH . J 4 HOH B 7 909 25 HOH HOH . J 4 HOH B 8 910 58 HOH HOH . J 4 HOH B 9 911 60 HOH HOH . J 4 HOH B 10 912 115 HOH HOH . J 4 HOH B 11 913 116 HOH HOH . J 4 HOH B 12 914 193 HOH HOH . J 4 HOH B 13 915 194 HOH HOH . J 4 HOH B 14 916 197 HOH HOH . J 4 HOH B 15 917 200 HOH HOH . J 4 HOH B 16 918 205 HOH HOH . J 4 HOH B 17 919 215 HOH HOH . J 4 HOH B 18 920 227 HOH HOH . J 4 HOH B 19 921 232 HOH HOH . J 4 HOH B 20 922 248 HOH HOH . J 4 HOH B 21 923 249 HOH HOH . J 4 HOH B 22 924 252 HOH HOH . J 4 HOH B 23 925 254 HOH HOH . J 4 HOH B 24 926 255 HOH HOH . J 4 HOH B 25 927 256 HOH HOH . J 4 HOH B 26 928 257 HOH HOH . J 4 HOH B 27 929 260 HOH HOH . J 4 HOH B 28 930 261 HOH HOH . J 4 HOH B 29 931 262 HOH HOH . J 4 HOH B 30 932 263 HOH HOH . J 4 HOH B 31 933 264 HOH HOH . J 4 HOH B 32 934 265 HOH HOH . J 4 HOH B 33 935 266 HOH HOH . J 4 HOH B 34 936 267 HOH HOH . J 4 HOH B 35 937 268 HOH HOH . J 4 HOH B 36 938 269 HOH HOH . J 4 HOH B 37 939 270 HOH HOH . J 4 HOH B 38 940 280 HOH HOH . J 4 HOH B 39 941 281 HOH HOH . J 4 HOH B 40 942 282 HOH HOH . J 4 HOH B 41 943 283 HOH HOH . J 4 HOH B 42 944 284 HOH HOH . J 4 HOH B 43 945 285 HOH HOH . J 4 HOH B 44 946 289 HOH HOH . J 4 HOH B 45 947 294 HOH HOH . J 4 HOH B 46 948 295 HOH HOH . J 4 HOH B 47 949 296 HOH HOH . J 4 HOH B 48 950 297 HOH HOH . J 4 HOH B 49 951 302 HOH HOH . J 4 HOH B 50 952 303 HOH HOH . J 4 HOH B 51 953 304 HOH HOH . J 4 HOH B 52 954 305 HOH HOH . J 4 HOH B 53 955 306 HOH HOH . J 4 HOH B 54 956 307 HOH HOH . J 4 HOH B 55 957 308 HOH HOH . J 4 HOH B 56 958 309 HOH HOH . J 4 HOH B 57 959 310 HOH HOH . J 4 HOH B 58 960 311 HOH HOH . J 4 HOH B 59 961 312 HOH HOH . J 4 HOH B 60 962 313 HOH HOH . J 4 HOH B 61 963 320 HOH HOH . J 4 HOH B 62 964 321 HOH HOH . J 4 HOH B 63 965 322 HOH HOH . J 4 HOH B 64 966 323 HOH HOH . J 4 HOH B 65 967 325 HOH HOH . J 4 HOH B 66 968 333 HOH HOH . J 4 HOH B 67 969 335 HOH HOH . J 4 HOH B 68 970 336 HOH HOH . J 4 HOH B 69 971 337 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MK1 . . . H 3 3.257 -5.441 16.163 1 35.91 ? N1 MK1 902 B 1 HETATM 2 C C1 MK1 . . . H 3 4.668 -5.208 15.687 1 35.63 ? C1 MK1 902 B 1 HETATM 3 C C2 MK1 . . . H 3 5.471 -4.07 16.304 1 33.35 ? C2 MK1 902 B 1 HETATM 4 C C3 MK1 . . . H 3 6.822 -4.052 15.649 1 34.66 ? C3 MK1 902 B 1 HETATM 5 O O1 MK1 . . . H 3 6.93 -3.539 14.532 1 34.12 ? O1 MK1 902 B 1 HETATM 6 N N2 MK1 . . . H 3 7.869 -4.6 16.329 1 32.83 ? N2 MK1 902 B 1 HETATM 7 C C4 MK1 . . . H 3 9.281 -4.73 15.996 1 32.44 ? C4 MK1 902 B 1 HETATM 8 C C5 MK1 . . . H 3 9.975 -5.471 17.15 1 30.77 ? C5 MK1 902 B 1 HETATM 9 C C6 MK1 . . . H 3 9.918 -3.498 15.842 1 31.1 ? C6 MK1 902 B 1 HETATM 10 C C7 MK1 . . . H 3 9.552 -5.533 14.794 1 32.61 ? C7 MK1 902 B 1 HETATM 11 N N3 MK1 . . . H 3 4.592 -2.878 15.982 1 34.06 ? N3 MK1 902 B 1 HETATM 12 C C8 MK1 . . . H 3 3.128 -2.974 16.307 1 33.68 ? C8 MK1 902 B 1 HETATM 13 C C9 MK1 . . . H 3 2.503 -4.294 15.835 1 35.24 ? C9 MK1 902 B 1 HETATM 14 C C10 MK1 . . . H 3 5.079 -1.586 16.496 1 33.37 ? C10 MK1 902 B 1 HETATM 15 C C11 MK1 . . . H 3 5.107 -0.485 15.443 1 32.45 ? C11 MK1 902 B 1 HETATM 16 O O2 MK1 . . . H 3 5.122 0.558 16.369 1 31.97 ? O2 MK1 902 B 1 HETATM 17 C C12 MK1 . . . H 3 6.324 -0.232 14.538 1 33.5 ? C12 MK1 902 B 1 HETATM 18 C C13 MK1 . . . H 3 6.27 0.87 13.472 1 34.02 ? C13 MK1 902 B 1 HETATM 19 C C14 MK1 . . . H 3 7.606 0.959 12.672 1 34.7 ? C14 MK1 902 B 1 HETATM 20 C C15 MK1 . . . H 3 7.6 1.992 11.589 1 36.03 ? C15 MK1 902 B 1 HETATM 21 C C16 MK1 . . . H 3 7.422 3.378 11.896 1 36.77 ? C16 MK1 902 B 1 HETATM 22 C C17 MK1 . . . H 3 7.404 4.334 10.85 1 38.1 ? C17 MK1 902 B 1 HETATM 23 C C18 MK1 . . . H 3 7.565 3.896 9.496 1 37.92 ? C18 MK1 902 B 1 HETATM 24 C C19 MK1 . . . H 3 7.744 2.513 9.191 1 37.97 ? C19 MK1 902 B 1 HETATM 25 C C20 MK1 . . . H 3 7.76 1.567 10.243 1 36.46 ? C20 MK1 902 B 1 HETATM 26 C C21 MK1 . . . H 3 5.092 0.647 12.478 1 34.56 ? C21 MK1 902 B 1 HETATM 27 O O3 MK1 . . . H 3 4.768 -0.498 12.083 1 36.09 ? O3 MK1 902 B 1 HETATM 28 N N4 MK1 . . . H 3 4.511 1.769 12.06 1 33.56 ? N4 MK1 902 B 1 HETATM 29 C C22 MK1 . . . H 3 3.433 1.806 11.076 1 33.3 ? C22 MK1 902 B 1 HETATM 30 C C23 MK1 . . . H 3 3.359 3.172 10.393 1 32.65 ? C23 MK1 902 B 1 HETATM 31 O O4 MK1 . . . H 3 3.77 4.212 11.284 1 32.89 ? O4 MK1 902 B 1 HETATM 32 C C24 MK1 . . . H 3 1.936 3.304 9.912 1 32.83 ? C24 MK1 902 B 1 HETATM 33 C C25 MK1 . . . H 3 0.999 2.59 10.842 1 32.31 ? C25 MK1 902 B 1 HETATM 34 C C26 MK1 . . . H 3 -0.354 2.613 11.143 1 32.94 ? C26 MK1 902 B 1 HETATM 35 C C27 MK1 . . . H 3 -0.835 1.726 12.138 1 33.63 ? C27 MK1 902 B 1 HETATM 36 C C28 MK1 . . . H 3 0.048 0.837 12.827 1 33.31 ? C28 MK1 902 B 1 HETATM 37 C C29 MK1 . . . H 3 1.423 0.797 12.54 1 32.42 ? C29 MK1 902 B 1 HETATM 38 C C30 MK1 . . . H 3 1.988 1.623 11.592 1 32.18 ? C30 MK1 902 B 1 HETATM 39 C C31 MK1 . . . H 3 2.645 -6.679 15.673 1 38.05 ? C31 MK1 902 B 1 HETATM 40 C C32 MK1 . . . H 3 3.242 -8.043 16.048 1 40.28 ? C32 MK1 902 B 1 HETATM 41 C C33 MK1 . . . H 3 3.283 -8.538 17.38 1 41.09 ? C33 MK1 902 B 1 HETATM 42 N N5 MK1 . . . H 3 3.835 -9.804 17.771 1 42.89 ? N5 MK1 902 B 1 HETATM 43 C C34 MK1 . . . H 3 4.353 -10.537 16.667 1 42.11 ? C34 MK1 902 B 1 HETATM 44 C C35 MK1 . . . H 3 4.341 -10.101 15.322 1 41.61 ? C35 MK1 902 B 1 HETATM 45 C C36 MK1 . . . H 3 3.777 -8.833 15.011 1 41.12 ? C36 MK1 902 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 45 #