data_1K6L # _model_server_result.job_id CS-BXnMOBWDe78ira5zaUA _model_server_result.datetime_utc '2024-11-14 17:42:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":701}' # _entry.id 1K6L # _exptl.entry_id 1K6L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1K6L _cell.length_a 141.5 _cell.length_b 141.5 _cell.length_c 187.2 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 H N N ? 7 P N N ? 7 Q N N ? 7 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 153 L HIS 153 1_555 E MG BCL . L BCL 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc2 A NE2 HIS 173 L HIS 173 1_555 D MG BCL . L BCL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc3 A NE2 HIS 190 L HIS 190 1_555 I FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc4 A NE2 HIS 230 L HIS 230 1_555 I FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc5 B NE2 HIS 182 M HIS 182 1_555 J MG BCL . M BCL 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc6 B NE2 HIS 202 M HIS 202 1_555 K MG BCL . M BCL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc7 B NE2 HIS 219 M HIS 219 1_555 I FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc8 B OE2 GLU 234 M GLU 234 1_555 I FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc9 B OE1 GLU 234 M GLU 234 1_555 I FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc10 B NE2 HIS 266 M HIS 266 1_555 I FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 722 n n N1 CM1 LDA sing 723 n n N1 CM2 LDA sing 724 n n N1 C1 LDA sing 725 n n CM1 HM11 LDA sing 726 n n CM1 HM12 LDA sing 727 n n CM1 HM13 LDA sing 728 n n CM2 HM21 LDA sing 729 n n CM2 HM22 LDA sing 730 n n CM2 HM23 LDA sing 731 n n C1 C2 LDA sing 732 n n C1 H11 LDA sing 733 n n C1 H12 LDA sing 734 n n C2 C3 LDA sing 735 n n C2 H21 LDA sing 736 n n C2 H22 LDA sing 737 n n C3 C4 LDA sing 738 n n C3 H31 LDA sing 739 n n C3 H32 LDA sing 740 n n C4 C5 LDA sing 741 n n C4 H41 LDA sing 742 n n C4 H42 LDA sing 743 n n C5 C6 LDA sing 744 n n C5 H51 LDA sing 745 n n C5 H52 LDA sing 746 n n C6 C7 LDA sing 747 n n C6 H61 LDA sing 748 n n C6 H62 LDA sing 749 n n C7 C8 LDA sing 750 n n C7 H71 LDA sing 751 n n C7 H72 LDA sing 752 n n C8 C9 LDA sing 753 n n C8 H81 LDA sing 754 n n C8 H82 LDA sing 755 n n C9 C10 LDA sing 756 n n C9 H91 LDA sing 757 n n C9 H92 LDA sing 758 n n C10 C11 LDA sing 759 n n C10 H101 LDA sing 760 n n C10 H102 LDA sing 761 n n C11 C12 LDA sing 762 n n C11 H111 LDA sing 763 n n C11 H112 LDA sing 764 n n C12 H121 LDA sing 765 n n C12 H122 LDA sing 766 n n C12 H123 LDA sing 767 n n # _atom_sites.entry_id 1K6L _atom_sites.fract_transf_matrix[1][1] 0.007067 _atom_sites.fract_transf_matrix[1][2] 0.00408 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00816 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BCL L 1 302 302 BCL BCL . E 4 BCL L 1 304 304 BCL BCL . F 5 BPH L 1 402 402 BPH BPH . G 6 U10 L 1 502 502 U10 U10 . H 7 LDA L 1 709 709 LDA LDA . I 8 FE M 1 500 500 FE FE . J 4 BCL M 1 501 301 BCL BCL . K 4 BCL M 1 502 303 BCL BCL . L 5 BPH M 1 401 401 BPH BPH . M 6 U10 M 1 503 501 U10 U10 . N 9 SPN M 1 600 600 SPN SPN . O 10 CDL M 1 800 800 CDL CDL . P 7 LDA M 1 701 701 LDA LDA . Q 7 LDA M 1 704 704 LDA LDA . R 7 LDA H 1 703 703 LDA LDA . S 11 HOH L 1 710 1 HOH HOH . S 11 HOH L 2 711 2 HOH HOH . S 11 HOH L 3 712 3 HOH HOH . S 11 HOH L 4 713 4 HOH HOH . S 11 HOH L 5 714 14 HOH HOH . S 11 HOH L 6 715 15 HOH HOH . S 11 HOH L 7 716 16 HOH HOH . S 11 HOH L 8 717 17 HOH HOH . S 11 HOH L 9 718 19 HOH HOH . S 11 HOH L 10 719 21 HOH HOH . S 11 HOH L 11 720 35 HOH HOH . S 11 HOH L 12 721 37 HOH HOH . S 11 HOH L 13 722 39 HOH HOH . S 11 HOH L 14 723 40 HOH HOH . S 11 HOH L 15 724 43 HOH HOH . S 11 HOH L 16 725 45 HOH HOH . S 11 HOH L 17 726 47 HOH HOH . S 11 HOH L 18 727 48 HOH HOH . S 11 HOH L 19 728 73 HOH HOH . S 11 HOH L 20 729 79 HOH HOH . S 11 HOH L 21 730 80 HOH HOH . S 11 HOH L 22 731 83 HOH HOH . S 11 HOH L 23 732 87 HOH HOH . S 11 HOH L 24 733 94 HOH HOH . S 11 HOH L 25 734 97 HOH HOH . S 11 HOH L 26 735 100 HOH HOH . S 11 HOH L 27 736 101 HOH HOH . S 11 HOH L 28 737 108 HOH HOH . S 11 HOH L 29 738 114 HOH HOH . S 11 HOH L 30 739 116 HOH HOH . S 11 HOH L 31 740 117 HOH HOH . S 11 HOH L 32 741 119 HOH HOH . S 11 HOH L 33 742 120 HOH HOH . S 11 HOH L 34 743 122 HOH HOH . S 11 HOH L 35 744 125 HOH HOH . S 11 HOH L 36 745 130 HOH HOH . S 11 HOH L 37 746 132 HOH HOH . T 11 HOH M 1 801 5 HOH HOH . T 11 HOH M 2 802 6 HOH HOH . T 11 HOH M 3 803 7 HOH HOH . T 11 HOH M 4 804 8 HOH HOH . T 11 HOH M 5 805 9 HOH HOH . T 11 HOH M 6 806 10 HOH HOH . T 11 HOH M 7 807 11 HOH HOH . T 11 HOH M 8 808 18 HOH HOH . T 11 HOH M 9 809 20 HOH HOH . T 11 HOH M 10 810 28 HOH HOH . T 11 HOH M 11 811 36 HOH HOH . T 11 HOH M 12 812 41 HOH HOH . T 11 HOH M 13 813 42 HOH HOH . T 11 HOH M 14 814 46 HOH HOH . T 11 HOH M 15 815 49 HOH HOH . T 11 HOH M 16 816 50 HOH HOH . T 11 HOH M 17 817 51 HOH HOH . T 11 HOH M 18 818 52 HOH HOH . T 11 HOH M 19 819 53 HOH HOH . T 11 HOH M 20 820 54 HOH HOH . T 11 HOH M 21 821 55 HOH HOH . T 11 HOH M 22 822 58 HOH HOH . T 11 HOH M 23 823 61 HOH HOH . T 11 HOH M 24 824 62 HOH HOH . T 11 HOH M 25 825 63 HOH HOH . T 11 HOH M 26 826 85 HOH HOH . T 11 HOH M 27 827 89 HOH HOH . T 11 HOH M 28 828 91 HOH HOH . T 11 HOH M 29 829 92 HOH HOH . T 11 HOH M 30 830 96 HOH HOH . T 11 HOH M 31 831 98 HOH HOH . T 11 HOH M 32 832 99 HOH HOH . T 11 HOH M 33 833 107 HOH HOH . T 11 HOH M 34 834 109 HOH HOH . T 11 HOH M 35 835 110 HOH HOH . T 11 HOH M 36 836 111 HOH HOH . T 11 HOH M 37 837 118 HOH HOH . T 11 HOH M 38 838 124 HOH HOH . T 11 HOH M 39 839 133 HOH HOH . T 11 HOH M 40 840 135 HOH HOH . U 11 HOH H 1 704 12 HOH HOH . U 11 HOH H 2 705 13 HOH HOH . U 11 HOH H 3 706 22 HOH HOH . U 11 HOH H 4 707 23 HOH HOH . U 11 HOH H 5 708 24 HOH HOH . U 11 HOH H 6 709 25 HOH HOH . U 11 HOH H 7 710 26 HOH HOH . U 11 HOH H 8 711 27 HOH HOH . U 11 HOH H 9 712 29 HOH HOH . U 11 HOH H 10 713 30 HOH HOH . U 11 HOH H 11 714 31 HOH HOH . U 11 HOH H 12 715 32 HOH HOH . U 11 HOH H 13 716 33 HOH HOH . U 11 HOH H 14 717 34 HOH HOH . U 11 HOH H 15 718 38 HOH HOH . U 11 HOH H 16 719 44 HOH HOH . U 11 HOH H 17 720 56 HOH HOH . U 11 HOH H 18 721 57 HOH HOH . U 11 HOH H 19 722 59 HOH HOH . U 11 HOH H 20 723 60 HOH HOH . U 11 HOH H 21 724 64 HOH HOH . U 11 HOH H 22 725 65 HOH HOH . U 11 HOH H 23 726 66 HOH HOH . U 11 HOH H 24 727 67 HOH HOH . U 11 HOH H 25 728 68 HOH HOH . U 11 HOH H 26 729 69 HOH HOH . U 11 HOH H 27 730 70 HOH HOH . U 11 HOH H 28 731 71 HOH HOH . U 11 HOH H 29 732 72 HOH HOH . U 11 HOH H 30 733 74 HOH HOH . U 11 HOH H 31 734 75 HOH HOH . U 11 HOH H 32 735 76 HOH HOH . U 11 HOH H 33 736 77 HOH HOH . U 11 HOH H 34 737 78 HOH HOH . U 11 HOH H 35 738 81 HOH HOH . U 11 HOH H 36 739 82 HOH HOH . U 11 HOH H 37 740 84 HOH HOH . U 11 HOH H 38 741 86 HOH HOH . U 11 HOH H 39 742 88 HOH HOH . U 11 HOH H 40 743 90 HOH HOH . U 11 HOH H 41 744 93 HOH HOH . U 11 HOH H 42 745 95 HOH HOH . U 11 HOH H 43 746 102 HOH HOH . U 11 HOH H 44 747 103 HOH HOH . U 11 HOH H 45 748 104 HOH HOH . U 11 HOH H 46 749 105 HOH HOH . U 11 HOH H 47 750 106 HOH HOH . U 11 HOH H 48 751 112 HOH HOH . U 11 HOH H 49 752 113 HOH HOH . U 11 HOH H 50 753 115 HOH HOH . U 11 HOH H 51 754 121 HOH HOH . U 11 HOH H 52 755 123 HOH HOH . U 11 HOH H 53 756 126 HOH HOH . U 11 HOH H 54 757 127 HOH HOH . U 11 HOH H 55 758 128 HOH HOH . U 11 HOH H 56 759 129 HOH HOH . U 11 HOH H 57 760 131 HOH HOH . U 11 HOH H 58 761 134 HOH HOH . U 11 HOH H 59 762 136 HOH HOH . U 11 HOH H 60 763 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . P 7 19.167 101.651 24.473 1 52.53 ? N1 LDA 701 M 1 HETATM 2 O O1 LDA . . . P 7 19.39 101.773 25.658 1 58.71 ? O1 LDA 701 M 1 HETATM 3 C CM1 LDA . . . P 7 18.032 102.519 24.082 1 47.97 ? CM1 LDA 701 M 1 HETATM 4 C CM2 LDA . . . P 7 20.352 102.062 23.732 1 49.47 ? CM2 LDA 701 M 1 HETATM 5 C C1 LDA . . . P 7 18.86 100.223 24.183 1 48.47 ? C1 LDA 701 M 1 HETATM 6 C C2 LDA . . . P 7 17.894 99.087 23.829 1 41.2 ? C2 LDA 701 M 1 HETATM 7 C C3 LDA . . . P 7 18.637 97.752 23.713 1 37.77 ? C3 LDA 701 M 1 HETATM 8 C C4 LDA . . . P 7 18.267 96.993 22.437 1 39.65 ? C4 LDA 701 M 1 HETATM 9 C C5 LDA . . . P 7 19.144 95.75 22.229 1 44.34 ? C5 LDA 701 M 1 HETATM 10 C C6 LDA . . . P 7 18.845 95.076 20.899 1 42.45 ? C6 LDA 701 M 1 HETATM 11 C C7 LDA . . . P 7 20.101 94.541 20.273 1 47.53 ? C7 LDA 701 M 1 HETATM 12 C C8 LDA . . . P 7 20.465 93.144 20.801 1 51.03 ? C8 LDA 701 M 1 HETATM 13 C C9 LDA . . . P 7 21.778 92.636 20.15 1 48.91 ? C9 LDA 701 M 1 HETATM 14 C C10 LDA . . . P 7 21.678 91.212 19.565 1 40.35 ? C10 LDA 701 M 1 HETATM 15 C C11 LDA . . . P 7 22.847 90.912 18.606 1 40.74 ? C11 LDA 701 M 1 HETATM 16 C C12 LDA . . . P 7 23.999 90.129 19.239 1 29.22 ? C12 LDA 701 M 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #