data_1K6L
#
_model_server_result.job_id            zg3b52LsCzdNUXzvVKapwA 
_model_server_result.datetime_utc      '2024-11-14 17:49:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1k6l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":703}' 
#
_entry.id    1K6L 
#
_exptl.entry_id    1K6L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              229.402 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'LAURYL DIMETHYLAMINE-N-OXIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1K6L 
_cell.length_a            141.5 
_cell.length_b            141.5 
_cell.length_c            187.2 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1K6L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 H N N 
? 7 P N N 
? 7 Q N N 
? 7 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 153 L HIS 153 1_555 E MG BCL . L BCL 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc2 A NE2 HIS 173 L HIS 173 1_555 D MG BCL . L BCL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc3 A NE2 HIS 190 L HIS 190 1_555 I FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc4 A NE2 HIS 230 L HIS 230 1_555 I FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc5 B NE2 HIS 182 M HIS 182 1_555 J MG BCL . M BCL 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc6 B NE2 HIS 202 M HIS 202 1_555 K MG BCL . M BCL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc7 B NE2 HIS 219 M HIS 219 1_555 I FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc8 B OE2 GLU 234 M GLU 234 1_555 I FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc9 B OE1 GLU 234 M GLU 234 1_555 I FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc10 B NE2 HIS 266 M HIS 266 1_555 I FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
#
_chem_comp.formula           'C14 H31 N O' 
_chem_comp.formula_weight    229.402 
_chem_comp.id                LDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'LAURYL DIMETHYLAMINE-N-OXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 O1 LDA sing 722 n n 
N1 CM1 LDA sing 723 n n 
N1 CM2 LDA sing 724 n n 
N1 C1 LDA sing 725 n n 
CM1 HM11 LDA sing 726 n n 
CM1 HM12 LDA sing 727 n n 
CM1 HM13 LDA sing 728 n n 
CM2 HM21 LDA sing 729 n n 
CM2 HM22 LDA sing 730 n n 
CM2 HM23 LDA sing 731 n n 
C1 C2 LDA sing 732 n n 
C1 H11 LDA sing 733 n n 
C1 H12 LDA sing 734 n n 
C2 C3 LDA sing 735 n n 
C2 H21 LDA sing 736 n n 
C2 H22 LDA sing 737 n n 
C3 C4 LDA sing 738 n n 
C3 H31 LDA sing 739 n n 
C3 H32 LDA sing 740 n n 
C4 C5 LDA sing 741 n n 
C4 H41 LDA sing 742 n n 
C4 H42 LDA sing 743 n n 
C5 C6 LDA sing 744 n n 
C5 H51 LDA sing 745 n n 
C5 H52 LDA sing 746 n n 
C6 C7 LDA sing 747 n n 
C6 H61 LDA sing 748 n n 
C6 H62 LDA sing 749 n n 
C7 C8 LDA sing 750 n n 
C7 H71 LDA sing 751 n n 
C7 H72 LDA sing 752 n n 
C8 C9 LDA sing 753 n n 
C8 H81 LDA sing 754 n n 
C8 H82 LDA sing 755 n n 
C9 C10 LDA sing 756 n n 
C9 H91 LDA sing 757 n n 
C9 H92 LDA sing 758 n n 
C10 C11 LDA sing 759 n n 
C10 H101 LDA sing 760 n n 
C10 H102 LDA sing 761 n n 
C11 C12 LDA sing 762 n n 
C11 H111 LDA sing 763 n n 
C11 H112 LDA sing 764 n n 
C12 H121 LDA sing 765 n n 
C12 H122 LDA sing 766 n n 
C12 H123 LDA sing 767 n n 
#
_atom_sites.entry_id                     1K6L 
_atom_sites.fract_transf_matrix[1][1]    0.007067 
_atom_sites.fract_transf_matrix[1][2]    0.00408 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00816 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005342 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 BCL L 1 302 302 BCL BCL . 
E 4 BCL L 1 304 304 BCL BCL . 
F 5 BPH L 1 402 402 BPH BPH . 
G 6 U10 L 1 502 502 U10 U10 . 
H 7 LDA L 1 709 709 LDA LDA . 
I 8 FE M 1 500 500 FE FE . 
J 4 BCL M 1 501 301 BCL BCL . 
K 4 BCL M 1 502 303 BCL BCL . 
L 5 BPH M 1 401 401 BPH BPH . 
M 6 U10 M 1 503 501 U10 U10 . 
N 9 SPN M 1 600 600 SPN SPN . 
O 10 CDL M 1 800 800 CDL CDL . 
P 7 LDA M 1 701 701 LDA LDA . 
Q 7 LDA M 1 704 704 LDA LDA . 
R 7 LDA H 1 703 703 LDA LDA . 
S 11 HOH L 1 710 1 HOH HOH . 
S 11 HOH L 2 711 2 HOH HOH . 
S 11 HOH L 3 712 3 HOH HOH . 
S 11 HOH L 4 713 4 HOH HOH . 
S 11 HOH L 5 714 14 HOH HOH . 
S 11 HOH L 6 715 15 HOH HOH . 
S 11 HOH L 7 716 16 HOH HOH . 
S 11 HOH L 8 717 17 HOH HOH . 
S 11 HOH L 9 718 19 HOH HOH . 
S 11 HOH L 10 719 21 HOH HOH . 
S 11 HOH L 11 720 35 HOH HOH . 
S 11 HOH L 12 721 37 HOH HOH . 
S 11 HOH L 13 722 39 HOH HOH . 
S 11 HOH L 14 723 40 HOH HOH . 
S 11 HOH L 15 724 43 HOH HOH . 
S 11 HOH L 16 725 45 HOH HOH . 
S 11 HOH L 17 726 47 HOH HOH . 
S 11 HOH L 18 727 48 HOH HOH . 
S 11 HOH L 19 728 73 HOH HOH . 
S 11 HOH L 20 729 79 HOH HOH . 
S 11 HOH L 21 730 80 HOH HOH . 
S 11 HOH L 22 731 83 HOH HOH . 
S 11 HOH L 23 732 87 HOH HOH . 
S 11 HOH L 24 733 94 HOH HOH . 
S 11 HOH L 25 734 97 HOH HOH . 
S 11 HOH L 26 735 100 HOH HOH . 
S 11 HOH L 27 736 101 HOH HOH . 
S 11 HOH L 28 737 108 HOH HOH . 
S 11 HOH L 29 738 114 HOH HOH . 
S 11 HOH L 30 739 116 HOH HOH . 
S 11 HOH L 31 740 117 HOH HOH . 
S 11 HOH L 32 741 119 HOH HOH . 
S 11 HOH L 33 742 120 HOH HOH . 
S 11 HOH L 34 743 122 HOH HOH . 
S 11 HOH L 35 744 125 HOH HOH . 
S 11 HOH L 36 745 130 HOH HOH . 
S 11 HOH L 37 746 132 HOH HOH . 
T 11 HOH M 1 801 5 HOH HOH . 
T 11 HOH M 2 802 6 HOH HOH . 
T 11 HOH M 3 803 7 HOH HOH . 
T 11 HOH M 4 804 8 HOH HOH . 
T 11 HOH M 5 805 9 HOH HOH . 
T 11 HOH M 6 806 10 HOH HOH . 
T 11 HOH M 7 807 11 HOH HOH . 
T 11 HOH M 8 808 18 HOH HOH . 
T 11 HOH M 9 809 20 HOH HOH . 
T 11 HOH M 10 810 28 HOH HOH . 
T 11 HOH M 11 811 36 HOH HOH . 
T 11 HOH M 12 812 41 HOH HOH . 
T 11 HOH M 13 813 42 HOH HOH . 
T 11 HOH M 14 814 46 HOH HOH . 
T 11 HOH M 15 815 49 HOH HOH . 
T 11 HOH M 16 816 50 HOH HOH . 
T 11 HOH M 17 817 51 HOH HOH . 
T 11 HOH M 18 818 52 HOH HOH . 
T 11 HOH M 19 819 53 HOH HOH . 
T 11 HOH M 20 820 54 HOH HOH . 
T 11 HOH M 21 821 55 HOH HOH . 
T 11 HOH M 22 822 58 HOH HOH . 
T 11 HOH M 23 823 61 HOH HOH . 
T 11 HOH M 24 824 62 HOH HOH . 
T 11 HOH M 25 825 63 HOH HOH . 
T 11 HOH M 26 826 85 HOH HOH . 
T 11 HOH M 27 827 89 HOH HOH . 
T 11 HOH M 28 828 91 HOH HOH . 
T 11 HOH M 29 829 92 HOH HOH . 
T 11 HOH M 30 830 96 HOH HOH . 
T 11 HOH M 31 831 98 HOH HOH . 
T 11 HOH M 32 832 99 HOH HOH . 
T 11 HOH M 33 833 107 HOH HOH . 
T 11 HOH M 34 834 109 HOH HOH . 
T 11 HOH M 35 835 110 HOH HOH . 
T 11 HOH M 36 836 111 HOH HOH . 
T 11 HOH M 37 837 118 HOH HOH . 
T 11 HOH M 38 838 124 HOH HOH . 
T 11 HOH M 39 839 133 HOH HOH . 
T 11 HOH M 40 840 135 HOH HOH . 
U 11 HOH H 1 704 12 HOH HOH . 
U 11 HOH H 2 705 13 HOH HOH . 
U 11 HOH H 3 706 22 HOH HOH . 
U 11 HOH H 4 707 23 HOH HOH . 
U 11 HOH H 5 708 24 HOH HOH . 
U 11 HOH H 6 709 25 HOH HOH . 
U 11 HOH H 7 710 26 HOH HOH . 
U 11 HOH H 8 711 27 HOH HOH . 
U 11 HOH H 9 712 29 HOH HOH . 
U 11 HOH H 10 713 30 HOH HOH . 
U 11 HOH H 11 714 31 HOH HOH . 
U 11 HOH H 12 715 32 HOH HOH . 
U 11 HOH H 13 716 33 HOH HOH . 
U 11 HOH H 14 717 34 HOH HOH . 
U 11 HOH H 15 718 38 HOH HOH . 
U 11 HOH H 16 719 44 HOH HOH . 
U 11 HOH H 17 720 56 HOH HOH . 
U 11 HOH H 18 721 57 HOH HOH . 
U 11 HOH H 19 722 59 HOH HOH . 
U 11 HOH H 20 723 60 HOH HOH . 
U 11 HOH H 21 724 64 HOH HOH . 
U 11 HOH H 22 725 65 HOH HOH . 
U 11 HOH H 23 726 66 HOH HOH . 
U 11 HOH H 24 727 67 HOH HOH . 
U 11 HOH H 25 728 68 HOH HOH . 
U 11 HOH H 26 729 69 HOH HOH . 
U 11 HOH H 27 730 70 HOH HOH . 
U 11 HOH H 28 731 71 HOH HOH . 
U 11 HOH H 29 732 72 HOH HOH . 
U 11 HOH H 30 733 74 HOH HOH . 
U 11 HOH H 31 734 75 HOH HOH . 
U 11 HOH H 32 735 76 HOH HOH . 
U 11 HOH H 33 736 77 HOH HOH . 
U 11 HOH H 34 737 78 HOH HOH . 
U 11 HOH H 35 738 81 HOH HOH . 
U 11 HOH H 36 739 82 HOH HOH . 
U 11 HOH H 37 740 84 HOH HOH . 
U 11 HOH H 38 741 86 HOH HOH . 
U 11 HOH H 39 742 88 HOH HOH . 
U 11 HOH H 40 743 90 HOH HOH . 
U 11 HOH H 41 744 93 HOH HOH . 
U 11 HOH H 42 745 95 HOH HOH . 
U 11 HOH H 43 746 102 HOH HOH . 
U 11 HOH H 44 747 103 HOH HOH . 
U 11 HOH H 45 748 104 HOH HOH . 
U 11 HOH H 46 749 105 HOH HOH . 
U 11 HOH H 47 750 106 HOH HOH . 
U 11 HOH H 48 751 112 HOH HOH . 
U 11 HOH H 49 752 113 HOH HOH . 
U 11 HOH H 50 753 115 HOH HOH . 
U 11 HOH H 51 754 121 HOH HOH . 
U 11 HOH H 52 755 123 HOH HOH . 
U 11 HOH H 53 756 126 HOH HOH . 
U 11 HOH H 54 757 127 HOH HOH . 
U 11 HOH H 55 758 128 HOH HOH . 
U 11 HOH H 56 759 129 HOH HOH . 
U 11 HOH H 57 760 131 HOH HOH . 
U 11 HOH H 58 761 134 HOH HOH . 
U 11 HOH H 59 762 136 HOH HOH . 
U 11 HOH H 60 763 137 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 LDA . . . R 7 16.011 83.887 5.846 1 51.92 ? N1 LDA 703 H 1 
HETATM 2 O O1 LDA . . . R 7 14.955 83.713 5.256 1 55.75 ? O1 LDA 703 H 1 
HETATM 3 C CM1 LDA . . . R 7 16.217 82.844 6.809 1 60.9 ? CM1 LDA 703 H 1 
HETATM 4 C CM2 LDA . . . R 7 17.144 83.859 4.936 1 51.29 ? CM2 LDA 703 H 1 
HETATM 5 C C1 LDA . . . R 7 16.003 85.156 6.549 1 46.59 ? C1 LDA 703 H 1 
HETATM 6 C C2 LDA . . . R 7 16.977 85.416 7.665 1 35.64 ? C2 LDA 703 H 1 
HETATM 7 C C3 LDA . . . R 7 16.417 86.369 8.668 1 34.3 ? C3 LDA 703 H 1 
HETATM 8 C C4 LDA . . . R 7 17.534 86.858 9.573 1 36.71 ? C4 LDA 703 H 1 
HETATM 9 C C5 LDA . . . R 7 16.977 87.75 10.657 1 38.06 ? C5 LDA 703 H 1 
HETATM 10 C C6 LDA . . . R 7 18.061 88.174 11.626 1 42.86 ? C6 LDA 703 H 1 
HETATM 11 C C7 LDA . . . R 7 17.463 88.985 12.775 1 46.64 ? C7 LDA 703 H 1 
HETATM 12 C C8 LDA . . . R 7 18.514 89.351 13.809 1 50.59 ? C8 LDA 703 H 1 
HETATM 13 C C9 LDA . . . R 7 18.142 88.806 15.179 1 55.04 ? C9 LDA 703 H 1 
HETATM 14 C C10 LDA . . . R 7 17.883 89.92 16.186 1 61.78 ? C10 LDA 703 H 1 
HETATM 15 C C11 LDA . . . R 7 18.48 89.583 17.548 1 64 ? C11 LDA 703 H 1 
HETATM 16 C C12 LDA . . . R 7 18.566 90.819 18.411 1 67.4 ? C12 LDA 703 H 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           389 
_model_server_stats.encode_time_ms          34 
_model_server_stats.element_count           16 
#