data_1K6P # _model_server_result.job_id eYFTAEx_o1oCKrnGiy1w4Q _model_server_result.datetime_utc '2025-01-08 17:12:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k6p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":807}' # _entry.id 1K6P # _exptl.entry_id 1K6P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 656.811 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(BENZO[1,3]DIOXOL-5-YLMETHYL)-PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1K6P _cell.length_a 51.02 _cell.length_b 58.95 _cell.length_c 61.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K6P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C38 H48 N4 O6' _chem_comp.formula_weight 656.811 _chem_comp.id XN3 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(BENZO[1,3]DIOXOL-5-YLMETHYL)-PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ANALOGUE OF INDINAVIR DRUG' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 XN3 sing 369 n n N1 C9 XN3 sing 370 n n N1 C31 XN3 sing 371 n n C1 C2 XN3 sing 372 n n C1 H11A XN3 sing 373 n n C1 H12 XN3 sing 374 n n C2 C3 XN3 sing 375 n n C2 N3 XN3 sing 376 n n C2 H2 XN3 sing 377 n n C3 O1 XN3 doub 378 n n C3 N2 XN3 sing 379 n n N2 C4 XN3 sing 380 n n N2 HN2 XN3 sing 381 n n C4 C5 XN3 sing 382 n n C4 C6 XN3 sing 383 n n C4 C7 XN3 sing 384 n n C5 H51 XN3 sing 385 n n C5 H52 XN3 sing 386 n n C5 H53 XN3 sing 387 n n C6 H61 XN3 sing 388 n n C6 H62 XN3 sing 389 n n C6 H63 XN3 sing 390 n n C7 H71 XN3 sing 391 n n C7 H72 XN3 sing 392 n n C7 H73 XN3 sing 393 n n N3 C8 XN3 sing 394 n n N3 C10 XN3 sing 395 n n C8 C9 XN3 sing 396 n n C8 H81 XN3 sing 397 n n C8 H82 XN3 sing 398 n n C9 H91 XN3 sing 399 n n C9 H92 XN3 sing 400 n n C10 C11 XN3 sing 401 n n C10 H101 XN3 sing 402 n n C10 H102 XN3 sing 403 n n C11 O2 XN3 sing 404 n n C11 C12 XN3 sing 405 n n C11 H11 XN3 sing 406 n n O2 HO2 XN3 sing 407 n n C12 C13 XN3 sing 408 n n C12 H121 XN3 sing 409 n n C12 H122 XN3 sing 410 n n C13 C14 XN3 sing 411 n n C13 C21 XN3 sing 412 n n C13 H13 XN3 sing 413 n n C14 C15 XN3 sing 414 n n C14 H141 XN3 sing 415 n n C14 H142 XN3 sing 416 n n C15 C16 XN3 doub 417 n y C15 C20 XN3 sing 418 n y C16 C17 XN3 sing 419 n y C16 H16 XN3 sing 420 n n C17 C18 XN3 doub 421 n y C17 H17 XN3 sing 422 n n C18 C19 XN3 sing 423 n y C18 H18 XN3 sing 424 n n C19 C20 XN3 doub 425 n y C19 H19 XN3 sing 426 n n C20 H20 XN3 sing 427 n n C21 O3 XN3 doub 428 n n C21 N4 XN3 sing 429 n n N4 C22 XN3 sing 430 n n N4 HN4 XN3 sing 431 n n C22 C23 XN3 sing 432 n n C22 C30 XN3 sing 433 n n C22 H22 XN3 sing 434 n n C23 O4 XN3 sing 435 n n C23 C24 XN3 sing 436 n n C23 H23 XN3 sing 437 n n O4 HO4 XN3 sing 438 n n C24 C25 XN3 sing 439 n n C24 H241 XN3 sing 440 n n C24 H242 XN3 sing 441 n n C25 C26 XN3 doub 442 n y C25 C30 XN3 sing 443 n y C26 C27 XN3 sing 444 n y C26 H26 XN3 sing 445 n n C27 C28 XN3 doub 446 n y C27 H27 XN3 sing 447 n n C28 C29 XN3 sing 448 n y C28 H28 XN3 sing 449 n n C29 C30 XN3 doub 450 n y C29 H29 XN3 sing 451 n n C31 C32 XN3 sing 452 n n C31 H311 XN3 sing 453 n n C31 H312 XN3 sing 454 n n C32 C33 XN3 doub 455 n y C32 C36 XN3 sing 456 n y C33 C37 XN3 sing 457 n y C33 H33 XN3 sing 458 n n C34 C35 XN3 sing 459 n y C34 O5 XN3 sing 460 n n C34 C37 XN3 doub 461 n y C35 C36 XN3 doub 462 n y C35 O6 XN3 sing 463 n n C36 H36 XN3 sing 464 n n O5 C38 XN3 sing 465 n n C38 O6 XN3 sing 466 n n C38 H381 XN3 sing 467 n n C38 H382 XN3 sing 468 n n C37 H37 XN3 sing 469 n n # _atom_sites.entry_id 1K6P _atom_sites.fract_transf_matrix[1][1] 0.019438 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 500 500 ACT ACT . D 2 ACT A 1 501 501 ACT ACT . E 2 ACT A 1 502 502 ACT ACT . F 2 ACT A 1 503 503 ACT ACT . G 2 ACT A 1 506 506 ACT ACT . H 2 ACT A 1 509 509 ACT ACT . I 2 ACT B 1 505 505 ACT ACT . J 2 ACT B 1 507 507 ACT ACT . K 2 ACT B 1 508 508 ACT ACT . L 3 XN3 B 1 807 807 XN3 XN3 . M 4 HOH A 1 510 1 HOH HOH . M 4 HOH A 2 511 2 HOH HOH . M 4 HOH A 3 512 3 HOH HOH . M 4 HOH A 4 513 4 HOH HOH . M 4 HOH A 5 514 13 HOH HOH . M 4 HOH A 6 515 14 HOH HOH . M 4 HOH A 7 516 18 HOH HOH . M 4 HOH A 8 517 19 HOH HOH . M 4 HOH A 9 518 20 HOH HOH . M 4 HOH A 10 519 21 HOH HOH . M 4 HOH A 11 520 22 HOH HOH . M 4 HOH A 12 521 23 HOH HOH . M 4 HOH A 13 522 25 HOH HOH . M 4 HOH A 14 523 34 HOH HOH . M 4 HOH A 15 524 36 HOH HOH . M 4 HOH A 16 525 37 HOH HOH . M 4 HOH A 17 526 38 HOH HOH . M 4 HOH A 18 527 46 HOH HOH . M 4 HOH A 19 528 50 HOH HOH . M 4 HOH A 20 529 52 HOH HOH . M 4 HOH A 21 530 53 HOH HOH . M 4 HOH A 22 531 54 HOH HOH . M 4 HOH A 23 532 55 HOH HOH . M 4 HOH A 24 533 58 HOH HOH . M 4 HOH A 25 534 59 HOH HOH . M 4 HOH A 26 535 60 HOH HOH . M 4 HOH A 27 536 61 HOH HOH . M 4 HOH A 28 537 63 HOH HOH . M 4 HOH A 29 538 65 HOH HOH . M 4 HOH A 30 539 66 HOH HOH . M 4 HOH A 31 540 68 HOH HOH . M 4 HOH A 32 541 70 HOH HOH . M 4 HOH A 33 542 71 HOH HOH . M 4 HOH A 34 543 72 HOH HOH . M 4 HOH A 35 544 73 HOH HOH . M 4 HOH A 36 545 76 HOH HOH . M 4 HOH A 37 546 92 HOH HOH . M 4 HOH A 38 547 94 HOH HOH . M 4 HOH A 39 548 97 HOH HOH . M 4 HOH A 40 549 98 HOH HOH . M 4 HOH A 41 550 100 HOH HOH . M 4 HOH A 42 551 101 HOH HOH . M 4 HOH A 43 552 102 HOH HOH . M 4 HOH A 44 553 103 HOH HOH . M 4 HOH A 45 554 104 HOH HOH . M 4 HOH A 46 555 105 HOH HOH . M 4 HOH A 47 556 106 HOH HOH . M 4 HOH A 48 557 107 HOH HOH . M 4 HOH A 49 558 108 HOH HOH . M 4 HOH A 50 559 109 HOH HOH . M 4 HOH A 51 560 110 HOH HOH . M 4 HOH A 52 561 116 HOH HOH . M 4 HOH A 53 562 120 HOH HOH . M 4 HOH A 54 563 123 HOH HOH . M 4 HOH A 55 564 124 HOH HOH . M 4 HOH A 56 565 127 HOH HOH . M 4 HOH A 57 566 128 HOH HOH . M 4 HOH A 58 567 131 HOH HOH . N 4 HOH B 1 808 5 HOH HOH . N 4 HOH B 2 809 6 HOH HOH . N 4 HOH B 3 810 7 HOH HOH . N 4 HOH B 4 811 8 HOH HOH . N 4 HOH B 5 812 9 HOH HOH . N 4 HOH B 6 813 10 HOH HOH . N 4 HOH B 7 814 12 HOH HOH . N 4 HOH B 8 815 16 HOH HOH . N 4 HOH B 9 816 27 HOH HOH . N 4 HOH B 10 817 29 HOH HOH . N 4 HOH B 11 818 31 HOH HOH . N 4 HOH B 12 819 33 HOH HOH . N 4 HOH B 13 820 35 HOH HOH . N 4 HOH B 14 821 39 HOH HOH . N 4 HOH B 15 822 41 HOH HOH . N 4 HOH B 16 823 42 HOH HOH . N 4 HOH B 17 824 43 HOH HOH . N 4 HOH B 18 825 44 HOH HOH . N 4 HOH B 19 826 47 HOH HOH . N 4 HOH B 20 827 48 HOH HOH . N 4 HOH B 21 828 49 HOH HOH . N 4 HOH B 22 829 56 HOH HOH . N 4 HOH B 23 830 57 HOH HOH . N 4 HOH B 24 831 64 HOH HOH . N 4 HOH B 25 832 67 HOH HOH . N 4 HOH B 26 833 69 HOH HOH . N 4 HOH B 27 834 75 HOH HOH . N 4 HOH B 28 835 78 HOH HOH . N 4 HOH B 29 836 79 HOH HOH . N 4 HOH B 30 837 80 HOH HOH . N 4 HOH B 31 838 81 HOH HOH . N 4 HOH B 32 839 82 HOH HOH . N 4 HOH B 33 840 83 HOH HOH . N 4 HOH B 34 841 85 HOH HOH . N 4 HOH B 35 842 86 HOH HOH . N 4 HOH B 36 843 87 HOH HOH . N 4 HOH B 37 844 88 HOH HOH . N 4 HOH B 38 845 89 HOH HOH . N 4 HOH B 39 846 91 HOH HOH . N 4 HOH B 40 847 93 HOH HOH . N 4 HOH B 41 848 95 HOH HOH . N 4 HOH B 42 849 96 HOH HOH . N 4 HOH B 43 850 99 HOH HOH . N 4 HOH B 44 851 111 HOH HOH . N 4 HOH B 45 852 112 HOH HOH . N 4 HOH B 46 853 114 HOH HOH . N 4 HOH B 47 854 117 HOH HOH . N 4 HOH B 48 855 118 HOH HOH . N 4 HOH B 49 856 121 HOH HOH . N 4 HOH B 50 857 122 HOH HOH . N 4 HOH B 51 858 125 HOH HOH . N 4 HOH B 52 859 126 HOH HOH . N 4 HOH B 53 860 129 HOH HOH . N 4 HOH B 54 861 130 HOH HOH . N 4 HOH B 55 862 132 HOH HOH . N 4 HOH B 56 863 133 HOH HOH . N 4 HOH B 57 864 134 HOH HOH . N 4 HOH B 58 865 135 HOH HOH . N 4 HOH B 59 866 136 HOH HOH . N 4 HOH B 60 867 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 XN3 . . . L 3 2.987 -5.221 16.433 1 32.07 ? N1 XN3 807 B 1 HETATM 2 C C1 XN3 . . . L 3 4.424 -5.136 15.883 1 28.53 ? C1 XN3 807 B 1 HETATM 3 C C2 XN3 . . . L 3 5.274 -4.003 16.455 1 25.38 ? C2 XN3 807 B 1 HETATM 4 C C3 XN3 . . . L 3 6.589 -4.107 15.78 1 25.92 ? C3 XN3 807 B 1 HETATM 5 O O1 XN3 . . . L 3 6.69 -3.717 14.587 1 23.55 ? O1 XN3 807 B 1 HETATM 6 N N2 XN3 . . . L 3 7.625 -4.613 16.505 1 24.16 ? N2 XN3 807 B 1 HETATM 7 C C4 XN3 . . . L 3 9.044 -4.825 16.155 1 22.66 ? C4 XN3 807 B 1 HETATM 8 C C5 XN3 . . . L 3 9.776 -5.467 17.364 1 21.2 ? C5 XN3 807 B 1 HETATM 9 C C6 XN3 . . . L 3 9.731 -3.618 15.929 1 19.7 ? C6 XN3 807 B 1 HETATM 10 C C7 XN3 . . . L 3 9.271 -5.728 14.98 1 23.52 ? C7 XN3 807 B 1 HETATM 11 N N3 XN3 . . . L 3 4.408 -2.732 16.155 1 24.89 ? N3 XN3 807 B 1 HETATM 12 C C8 XN3 . . . L 3 2.977 -2.721 16.623 1 25.69 ? C8 XN3 807 B 1 HETATM 13 C C9 XN3 . . . L 3 2.304 -3.992 16.089 1 29.01 ? C9 XN3 807 B 1 HETATM 14 C C10 XN3 . . . L 3 5.034 -1.478 16.685 1 22.8 ? C10 XN3 807 B 1 HETATM 15 C C11 XN3 . . . L 3 5.031 -0.404 15.652 1 21.82 ? C11 XN3 807 B 1 HETATM 16 O O2 XN3 . . . L 3 5.026 0.651 16.597 1 18.53 ? O2 XN3 807 B 1 HETATM 17 C C12 XN3 . . . L 3 6.26 -0.144 14.795 1 19.65 ? C12 XN3 807 B 1 HETATM 18 C C13 XN3 . . . L 3 6.247 0.968 13.736 1 20.74 ? C13 XN3 807 B 1 HETATM 19 C C14 XN3 . . . L 3 7.676 1.026 12.987 1 23.3 ? C14 XN3 807 B 1 HETATM 20 C C15 XN3 . . . L 3 7.708 2.134 11.912 1 24.68 ? C15 XN3 807 B 1 HETATM 21 C C16 XN3 . . . L 3 7.564 3.576 12.269 1 24.39 ? C16 XN3 807 B 1 HETATM 22 C C17 XN3 . . . L 3 7.586 4.581 11.223 1 27.15 ? C17 XN3 807 B 1 HETATM 23 C C18 XN3 . . . L 3 7.753 4.151 9.811 1 28.57 ? C18 XN3 807 B 1 HETATM 24 C C19 XN3 . . . L 3 7.895 2.718 9.474 1 27.74 ? C19 XN3 807 B 1 HETATM 25 C C20 XN3 . . . L 3 7.872 1.729 10.518 1 24.28 ? C20 XN3 807 B 1 HETATM 26 C C21 XN3 . . . L 3 5.136 0.742 12.627 1 22.46 ? C21 XN3 807 B 1 HETATM 27 O O3 XN3 . . . L 3 4.774 -0.409 12.158 1 23.61 ? O3 XN3 807 B 1 HETATM 28 N N4 XN3 . . . L 3 4.646 1.895 12.231 1 22.78 ? N4 XN3 807 B 1 HETATM 29 C C22 XN3 . . . L 3 3.633 2.075 11.211 1 22.1 ? C22 XN3 807 B 1 HETATM 30 C C23 XN3 . . . L 3 3.599 3.499 10.677 1 19.09 ? C23 XN3 807 B 1 HETATM 31 O O4 XN3 . . . L 3 3.736 4.453 11.726 1 17.77 ? O4 XN3 807 B 1 HETATM 32 C C24 XN3 . . . L 3 2.302 3.578 9.921 1 19.3 ? C24 XN3 807 B 1 HETATM 33 C C25 XN3 . . . L 3 1.255 2.845 10.718 1 20.1 ? C25 XN3 807 B 1 HETATM 34 C C26 XN3 . . . L 3 -0.14 2.839 10.859 1 21.37 ? C26 XN3 807 B 1 HETATM 35 C C27 XN3 . . . L 3 -0.724 1.905 11.805 1 22.65 ? C27 XN3 807 B 1 HETATM 36 C C28 XN3 . . . L 3 0.109 0.984 12.599 1 21.2 ? C28 XN3 807 B 1 HETATM 37 C C29 XN3 . . . L 3 1.518 0.98 12.465 1 18.84 ? C29 XN3 807 B 1 HETATM 38 C C30 XN3 . . . L 3 2.167 1.848 11.576 1 20.81 ? C30 XN3 807 B 1 HETATM 39 C C31 XN3 . . . L 3 2.237 -6.357 15.862 1 34.59 ? C31 XN3 807 B 1 HETATM 40 C C32 XN3 . . . L 3 2.785 -7.749 16.17 1 40.57 ? C32 XN3 807 B 1 HETATM 41 C C33 XN3 . . . L 3 2.627 -8.346 17.497 1 41.4 ? C33 XN3 807 B 1 HETATM 42 C C34 XN3 . . . L 3 3.824 -10.363 16.761 1 45.47 ? C34 XN3 807 B 1 HETATM 43 C C35 XN3 . . . L 3 4.019 -9.841 15.442 1 44.97 ? C35 XN3 807 B 1 HETATM 44 C C36 XN3 . . . L 3 3.485 -8.508 15.132 1 42.79 ? C36 XN3 807 B 1 HETATM 45 O O5 XN3 . . . L 3 4.418 -11.636 16.81 1 47.5 ? O5 XN3 807 B 1 HETATM 46 C C38 XN3 . . . L 3 5.05 -12.091 15.549 1 47.92 ? C38 XN3 807 B 1 HETATM 47 O O6 XN3 . . . L 3 4.711 -10.844 14.773 1 47.06 ? O6 XN3 807 B 1 HETATM 48 C C37 XN3 . . . L 3 3.134 -9.674 17.873 1 44.54 ? C37 XN3 807 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #