data_1K6T # _model_server_result.job_id 7ODdGkY2rfD5dBQrq-Zd0w _model_server_result.datetime_utc '2025-01-08 17:36:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k6t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":509}' # _entry.id 1K6T # _exptl.entry_id 1K6T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 627.816 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-[2-HYDROXY-1-INDANYL]-5-[(2-TERTIARYBUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4-HYDROXY-2-(1-PHENYLETHYL)-PEN TANAMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1K6T _cell.length_a 51.49 _cell.length_b 59.37 _cell.length_c 62.03 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K6T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C37 H49 N5 O4' _chem_comp.formula_weight 627.816 _chem_comp.id XN1 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-[2-HYDROXY-1-INDANYL]-5-[(2-TERTIARYBUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4-HYDROXY-2-(1-PHENYLETHYL)-PEN TANAMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ANALOGUE OF INDINAVIR' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 XN1 sing 369 n n N1 C9 XN1 sing 370 n n N1 C31 XN1 sing 371 n n C1 C2 XN1 sing 372 n n C1 H11A XN1 sing 373 n n C1 H12 XN1 sing 374 n n C2 C3 XN1 sing 375 n n C2 N3 XN1 sing 376 n n C2 H2 XN1 sing 377 n n C3 O1 XN1 doub 378 n n C3 N2 XN1 sing 379 n n N2 C4 XN1 sing 380 n n N2 HN2 XN1 sing 381 n n C4 C5 XN1 sing 382 n n C4 C6 XN1 sing 383 n n C4 C7 XN1 sing 384 n n C5 H51 XN1 sing 385 n n C5 H52 XN1 sing 386 n n C5 H53 XN1 sing 387 n n C6 H61 XN1 sing 388 n n C6 H62 XN1 sing 389 n n C6 H63 XN1 sing 390 n n C7 H71 XN1 sing 391 n n C7 H72 XN1 sing 392 n n C7 H73 XN1 sing 393 n n N3 C8 XN1 sing 394 n n N3 C10 XN1 sing 395 n n C8 C9 XN1 sing 396 n n C8 H81 XN1 sing 397 n n C8 H82 XN1 sing 398 n n C9 H91 XN1 sing 399 n n C9 H92 XN1 sing 400 n n C10 C11 XN1 sing 401 n n C10 H101 XN1 sing 402 n n C10 H102 XN1 sing 403 n n C11 O2 XN1 sing 404 n n C11 C12 XN1 sing 405 n n C11 H11 XN1 sing 406 n n O2 HO2 XN1 sing 407 n n C12 C13 XN1 sing 408 n n C12 H121 XN1 sing 409 n n C12 H122 XN1 sing 410 n n C13 C14 XN1 sing 411 n n C13 C21 XN1 sing 412 n n C13 H13 XN1 sing 413 n n C14 C15 XN1 sing 414 n n C14 C37 XN1 sing 415 n n C14 H141 XN1 sing 416 n n C15 C16 XN1 doub 417 n y C15 C20 XN1 sing 418 n y C16 C17 XN1 sing 419 n y C16 H16 XN1 sing 420 n n C17 C18 XN1 doub 421 n y C17 H17 XN1 sing 422 n n C18 C19 XN1 sing 423 n y C18 H18 XN1 sing 424 n n C19 C20 XN1 doub 425 n y C19 H19 XN1 sing 426 n n C20 H20 XN1 sing 427 n n C21 O3 XN1 doub 428 n n C21 N4 XN1 sing 429 n n N4 C22 XN1 sing 430 n n N4 HN4 XN1 sing 431 n n C22 C23 XN1 sing 432 n n C22 C30 XN1 sing 433 n n C22 H22 XN1 sing 434 n n C23 O4 XN1 sing 435 n n C23 C24 XN1 sing 436 n n C23 H23 XN1 sing 437 n n O4 HO4 XN1 sing 438 n n C24 C25 XN1 sing 439 n n C24 H241 XN1 sing 440 n n C24 H242 XN1 sing 441 n n C25 C26 XN1 doub 442 n y C25 C30 XN1 sing 443 n y C26 C27 XN1 sing 444 n y C26 H26 XN1 sing 445 n n C27 C28 XN1 doub 446 n y C27 H27 XN1 sing 447 n n C28 C29 XN1 sing 448 n y C28 H28 XN1 sing 449 n n C29 C30 XN1 doub 450 n y C29 H29 XN1 sing 451 n n C31 C32 XN1 sing 452 n n C31 H311 XN1 sing 453 n n C31 H312 XN1 sing 454 n n C32 C33 XN1 doub 455 n y C32 C36 XN1 sing 456 n y C33 N5 XN1 sing 457 n y C33 H33 XN1 sing 458 n n N5 C34 XN1 doub 459 n y C34 C35 XN1 sing 460 n y C34 H34 XN1 sing 461 n n C35 C36 XN1 doub 462 n y C35 H35 XN1 sing 463 n n C36 H36 XN1 sing 464 n n C37 H371 XN1 sing 465 n n C37 H372 XN1 sing 466 n n C37 H373 XN1 sing 467 n n # _atom_sites.entry_id 1K6T _atom_sites.fract_transf_matrix[1][1] 0.019438 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 502 502 ACT ACT . D 2 ACT A 1 503 503 ACT ACT . E 2 ACT A 1 506 506 ACT ACT . F 2 ACT B 1 508 508 ACT ACT . G 3 XN1 B 1 509 51 XN1 XN1 . H 4 HOH A 1 507 3 HOH HOH . H 4 HOH A 2 508 5 HOH HOH . H 4 HOH A 3 509 7 HOH HOH . H 4 HOH A 4 510 8 HOH HOH . H 4 HOH A 5 511 21 HOH HOH . H 4 HOH A 6 512 26 HOH HOH . H 4 HOH A 7 513 35 HOH HOH . H 4 HOH A 8 514 44 HOH HOH . H 4 HOH A 9 515 52 HOH HOH . H 4 HOH A 10 516 154 HOH HOH . H 4 HOH A 11 517 160 HOH HOH . H 4 HOH A 12 518 171 HOH HOH . H 4 HOH A 13 519 172 HOH HOH . H 4 HOH A 14 520 177 HOH HOH . H 4 HOH A 15 521 179 HOH HOH . H 4 HOH A 16 522 180 HOH HOH . H 4 HOH A 17 523 181 HOH HOH . H 4 HOH A 18 524 190 HOH HOH . H 4 HOH A 19 525 192 HOH HOH . H 4 HOH A 20 526 198 HOH HOH . H 4 HOH A 21 527 203 HOH HOH . H 4 HOH A 22 528 219 HOH HOH . H 4 HOH A 23 529 224 HOH HOH . H 4 HOH A 24 530 228 HOH HOH . H 4 HOH A 25 531 229 HOH HOH . H 4 HOH A 26 532 231 HOH HOH . H 4 HOH A 27 533 232 HOH HOH . H 4 HOH A 28 534 233 HOH HOH . H 4 HOH A 29 535 234 HOH HOH . H 4 HOH A 30 536 236 HOH HOH . H 4 HOH A 31 537 239 HOH HOH . H 4 HOH A 32 538 242 HOH HOH . H 4 HOH A 33 539 246 HOH HOH . H 4 HOH A 34 540 250 HOH HOH . H 4 HOH A 35 541 261 HOH HOH . H 4 HOH A 36 542 262 HOH HOH . H 4 HOH A 37 543 263 HOH HOH . I 4 HOH B 1 510 1 HOH HOH . I 4 HOH B 2 511 4 HOH HOH . I 4 HOH B 3 512 10 HOH HOH . I 4 HOH B 4 513 11 HOH HOH . I 4 HOH B 5 514 13 HOH HOH . I 4 HOH B 6 515 24 HOH HOH . I 4 HOH B 7 516 25 HOH HOH . I 4 HOH B 8 517 58 HOH HOH . I 4 HOH B 9 518 60 HOH HOH . I 4 HOH B 10 519 76 HOH HOH . I 4 HOH B 11 520 115 HOH HOH . I 4 HOH B 12 521 116 HOH HOH . I 4 HOH B 13 522 157 HOH HOH . I 4 HOH B 14 523 158 HOH HOH . I 4 HOH B 15 524 161 HOH HOH . I 4 HOH B 16 525 174 HOH HOH . I 4 HOH B 17 526 175 HOH HOH . I 4 HOH B 18 527 185 HOH HOH . I 4 HOH B 19 528 186 HOH HOH . I 4 HOH B 20 529 187 HOH HOH . I 4 HOH B 21 530 189 HOH HOH . I 4 HOH B 22 531 191 HOH HOH . I 4 HOH B 23 532 193 HOH HOH . I 4 HOH B 24 533 194 HOH HOH . I 4 HOH B 25 534 195 HOH HOH . I 4 HOH B 26 535 196 HOH HOH . I 4 HOH B 27 536 197 HOH HOH . I 4 HOH B 28 537 199 HOH HOH . I 4 HOH B 29 538 200 HOH HOH . I 4 HOH B 30 539 201 HOH HOH . I 4 HOH B 31 540 202 HOH HOH . I 4 HOH B 32 541 205 HOH HOH . I 4 HOH B 33 542 206 HOH HOH . I 4 HOH B 34 543 210 HOH HOH . I 4 HOH B 35 544 211 HOH HOH . I 4 HOH B 36 545 212 HOH HOH . I 4 HOH B 37 546 214 HOH HOH . I 4 HOH B 38 547 215 HOH HOH . I 4 HOH B 39 548 216 HOH HOH . I 4 HOH B 40 549 217 HOH HOH . I 4 HOH B 41 550 218 HOH HOH . I 4 HOH B 42 551 220 HOH HOH . I 4 HOH B 43 552 223 HOH HOH . I 4 HOH B 44 553 225 HOH HOH . I 4 HOH B 45 554 226 HOH HOH . I 4 HOH B 46 555 227 HOH HOH . I 4 HOH B 47 556 237 HOH HOH . I 4 HOH B 48 557 241 HOH HOH . I 4 HOH B 49 558 243 HOH HOH . I 4 HOH B 50 559 247 HOH HOH . I 4 HOH B 51 560 248 HOH HOH . I 4 HOH B 52 561 249 HOH HOH . I 4 HOH B 53 562 251 HOH HOH . I 4 HOH B 54 563 252 HOH HOH . I 4 HOH B 55 564 253 HOH HOH . I 4 HOH B 56 565 254 HOH HOH . I 4 HOH B 57 566 258 HOH HOH . I 4 HOH B 58 567 259 HOH HOH . I 4 HOH B 59 568 260 HOH HOH . I 4 HOH B 60 569 264 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 XN1 . . . G 3 3.182 -5.332 16.303 1 29.11 ? N1 XN1 509 B 1 HETATM 2 C C1 XN1 . . . G 3 4.602 -5.146 15.8 1 27.18 ? C1 XN1 509 B 1 HETATM 3 C C2 XN1 . . . G 3 5.403 -3.997 16.407 1 25.82 ? C2 XN1 509 B 1 HETATM 4 C C3 XN1 . . . G 3 6.737 -4.025 15.74 1 26.49 ? C3 XN1 509 B 1 HETATM 5 O O1 XN1 . . . G 3 6.85 -3.583 14.58 1 27.11 ? O1 XN1 509 B 1 HETATM 6 N N2 XN1 . . . G 3 7.76 -4.533 16.439 1 26.22 ? N2 XN1 509 B 1 HETATM 7 C C4 XN1 . . . G 3 9.173 -4.7 16.09 1 26.15 ? C4 XN1 509 B 1 HETATM 8 C C5 XN1 . . . G 3 9.907 -5.365 17.282 1 24.04 ? C5 XN1 509 B 1 HETATM 9 C C6 XN1 . . . G 3 9.829 -3.48 15.872 1 23.15 ? C6 XN1 509 B 1 HETATM 10 C C7 XN1 . . . G 3 9.411 -5.586 14.916 1 23.63 ? C7 XN1 509 B 1 HETATM 11 N N3 XN1 . . . G 3 4.49 -2.776 16.122 1 25.07 ? N3 XN1 509 B 1 HETATM 12 C C8 XN1 . . . G 3 3.061 -2.859 16.566 1 26.64 ? C8 XN1 509 B 1 HETATM 13 C C9 XN1 . . . G 3 2.439 -4.142 16.032 1 28.97 ? C9 XN1 509 B 1 HETATM 14 C C10 XN1 . . . G 3 5.012 -1.489 16.657 1 23.74 ? C10 XN1 509 B 1 HETATM 15 C C11 XN1 . . . G 3 4.997 -0.437 15.604 1 23.22 ? C11 XN1 509 B 1 HETATM 16 O O2 XN1 . . . G 3 5.122 0.614 16.527 1 21.08 ? O2 XN1 509 B 1 HETATM 17 C C12 XN1 . . . G 3 6.166 -0.263 14.636 1 24.5 ? C12 XN1 509 B 1 HETATM 18 C C13 XN1 . . . G 3 6.137 0.819 13.537 1 27.02 ? C13 XN1 509 B 1 HETATM 19 C C14 XN1 . . . G 3 7.494 0.777 12.692 1 25.42 ? C14 XN1 509 B 1 HETATM 20 C C15 XN1 . . . G 3 7.493 1.843 11.587 1 26.65 ? C15 XN1 509 B 1 HETATM 21 C C16 XN1 . . . G 3 7.326 3.273 11.893 1 25.29 ? C16 XN1 509 B 1 HETATM 22 C C17 XN1 . . . G 3 7.318 4.233 10.823 1 27.49 ? C17 XN1 509 B 1 HETATM 23 C C18 XN1 . . . G 3 7.481 3.766 9.441 1 28.12 ? C18 XN1 509 B 1 HETATM 24 C C19 XN1 . . . G 3 7.648 2.351 9.153 1 29.83 ? C19 XN1 509 B 1 HETATM 25 C C20 XN1 . . . G 3 7.653 1.404 10.22 1 27.41 ? C20 XN1 509 B 1 HETATM 26 C C21 XN1 . . . G 3 4.951 0.612 12.533 1 27.45 ? C21 XN1 509 B 1 HETATM 27 O O3 XN1 . . . G 3 4.483 -0.537 12.198 1 30.65 ? O3 XN1 509 B 1 HETATM 28 N N4 XN1 . . . G 3 4.516 1.759 12.058 1 27.21 ? N4 XN1 509 B 1 HETATM 29 C C22 XN1 . . . G 3 3.453 1.892 11.081 1 25.17 ? C22 XN1 509 B 1 HETATM 30 C C23 XN1 . . . G 3 3.415 3.282 10.476 1 22.92 ? C23 XN1 509 B 1 HETATM 31 O O4 XN1 . . . G 3 3.703 4.274 11.447 1 23.42 ? O4 XN1 509 B 1 HETATM 32 C C24 XN1 . . . G 3 2.05 3.398 9.854 1 22.44 ? C24 XN1 509 B 1 HETATM 33 C C25 XN1 . . . G 3 1.053 2.685 10.729 1 22.9 ? C25 XN1 509 B 1 HETATM 34 C C26 XN1 . . . G 3 -0.321 2.701 10.957 1 23.17 ? C26 XN1 509 B 1 HETATM 35 C C27 XN1 . . . G 3 -0.856 1.797 11.936 1 24.22 ? C27 XN1 509 B 1 HETATM 36 C C28 XN1 . . . G 3 0.003 0.888 12.675 1 24.63 ? C28 XN1 509 B 1 HETATM 37 C C29 XN1 . . . G 3 1.394 0.86 12.457 1 22.31 ? C29 XN1 509 B 1 HETATM 38 C C30 XN1 . . . G 3 1.999 1.696 11.532 1 23.09 ? C30 XN1 509 B 1 HETATM 39 C C31 XN1 . . . G 3 2.496 -6.492 15.704 1 30.04 ? C31 XN1 509 B 1 HETATM 40 C C32 XN1 . . . G 3 3.118 -7.88 15.876 1 33.48 ? C32 XN1 509 B 1 HETATM 41 C C33 XN1 . . . G 3 3.268 -8.508 17.162 1 34.53 ? C33 XN1 509 B 1 HETATM 42 N N5 XN1 . . . G 3 3.858 -9.824 17.371 1 37.29 ? N5 XN1 509 B 1 HETATM 43 C C34 XN1 . . . G 3 4.294 -10.471 16.149 1 34.52 ? C34 XN1 509 B 1 HETATM 44 C C35 XN1 . . . G 3 4.172 -9.899 14.836 1 35.16 ? C35 XN1 509 B 1 HETATM 45 C C36 XN1 . . . G 3 3.575 -8.582 14.706 1 34.42 ? C36 XN1 509 B 1 HETATM 46 C C37 XN1 . . . G 3 8.885 0.784 13.31 1 27.51 ? C37 XN1 509 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 46 #