data_1K6Y # _model_server_result.job_id t5p7RIHU-f5a0Cieh3NVRA _model_server_result.datetime_utc '2024-11-05 05:02:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k6y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 1K6Y # _exptl.entry_id 1K6Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1K6Y _cell.length_a 102.71 _cell.length_b 102.71 _cell.length_c 280.56 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K6Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 PQS dimeric 2 software_defined_assembly 3 PQS dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 1 1 A,B,E,F,G,H,I,J,Q,R 2 1 C,D,K,L,M,N,O,P,S,T 2 2 A,B,E,F,G,H,I,J,Q,R 3 1 C,D,K,L,M,N,O,P,S,T 4 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_675 -y+1,-x+2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 102.71 205.42 140.28 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 12 A HIS 12 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc2 A ND1 HIS 16 A HIS 16 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 A O VAL 37 A VAL 37 1_555 F K K . A K 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.403 ? metalc ? metalc4 A O ALA 38 A ALA 38 1_555 F K K . A K 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.149 ? metalc ? metalc5 A SG CYS 40 A CYS 40 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc6 A O CYS 40 A CYS 40 1_555 F K K . A K 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.171 ? metalc ? metalc7 A SG CYS 43 A CYS 43 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc8 A O CYS 43 A CYS 43 1_555 F K K . A K 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.183 ? metalc ? metalc9 B NE2 HIS 12 B HIS 12 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc10 B ND1 HIS 16 B HIS 16 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc11 B O VAL 37 B VAL 37 1_555 I K K . B K 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.435 ? metalc ? metalc12 B O ALA 38 B ALA 38 1_555 I K K . B K 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.084 ? metalc ? metalc13 B SG CYS 40 B CYS 40 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc14 B O CYS 40 B CYS 40 1_555 I K K . B K 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.048 ? metalc ? metalc15 B SG CYS 43 B CYS 43 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc16 B O CYS 43 B CYS 43 1_555 I K K . B K 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? metalc ? metalc17 C NE2 HIS 12 C HIS 12 1_555 K ZN ZN . C ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc18 C ND1 HIS 16 C HIS 16 1_555 K ZN ZN . C ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc19 C O VAL 37 C VAL 37 1_555 L K K . C K 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.458 ? metalc ? metalc20 C O ALA 38 C ALA 38 1_555 L K K . C K 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.062 ? metalc ? metalc21 C SG CYS 40 C CYS 40 1_555 K ZN ZN . C ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc22 C O CYS 40 C CYS 40 1_555 L K K . C K 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.029 ? metalc ? metalc23 C SG CYS 43 C CYS 43 1_555 K ZN ZN . C ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc24 C O CYS 43 C CYS 43 1_555 L K K . C K 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc25 L K K . C K 453 1_555 S O HOH . C HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.379 ? metalc ? metalc26 D NE2 HIS 12 D HIS 12 1_555 N ZN ZN . D ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc27 D ND1 HIS 16 D HIS 16 1_555 N ZN ZN . D ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc28 D O VAL 37 D VAL 37 1_555 O K K . D K 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.327 ? metalc ? metalc29 D O ALA 38 D ALA 38 1_555 O K K . D K 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.08 ? metalc ? metalc30 D SG CYS 40 D CYS 40 1_555 N ZN ZN . D ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc31 D O CYS 40 D CYS 40 1_555 O K K . D K 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc32 D SG CYS 43 D CYS 43 1_555 N ZN ZN . D ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc33 D O CYS 43 D CYS 43 1_555 O K K . D K 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? metalc ? metalc34 O K K . D K 454 1_555 T O HOH . D HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.406 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1K6Y _atom_sites.fract_transf_matrix[1][1] 0.009736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 401 401 ZN ZN . F 3 K A 1 451 451 K K . G 4 PO4 A 1 501 501 PO4 PO4 . H 2 ZN B 1 402 402 ZN ZN . I 3 K B 1 452 452 K K . J 4 PO4 B 1 502 502 PO4 PO4 . K 2 ZN C 1 403 403 ZN ZN . L 3 K C 1 453 453 K K . M 4 PO4 C 1 503 503 PO4 PO4 . N 2 ZN D 1 404 404 ZN ZN . O 3 K D 1 454 454 K K . P 4 PO4 D 1 504 504 PO4 PO4 . Q 5 HOH A 1 502 0 HOH HOH . Q 5 HOH A 2 503 2 HOH HOH . Q 5 HOH A 3 504 5 HOH HOH . Q 5 HOH A 4 505 13 HOH HOH . Q 5 HOH A 5 506 16 HOH HOH . Q 5 HOH A 6 507 26 HOH HOH . Q 5 HOH A 7 508 29 HOH HOH . Q 5 HOH A 8 509 31 HOH HOH . Q 5 HOH A 9 510 35 HOH HOH . Q 5 HOH A 10 511 36 HOH HOH . Q 5 HOH A 11 512 39 HOH HOH . Q 5 HOH A 12 513 40 HOH HOH . Q 5 HOH A 13 514 42 HOH HOH . Q 5 HOH A 14 515 46 HOH HOH . Q 5 HOH A 15 516 52 HOH HOH . Q 5 HOH A 16 517 54 HOH HOH . Q 5 HOH A 17 518 57 HOH HOH . Q 5 HOH A 18 519 68 HOH HOH . Q 5 HOH A 19 520 75 HOH HOH . Q 5 HOH A 20 521 76 HOH HOH . Q 5 HOH A 21 522 82 HOH HOH . Q 5 HOH A 22 523 83 HOH HOH . Q 5 HOH A 23 524 84 HOH HOH . Q 5 HOH A 24 525 86 HOH HOH . Q 5 HOH A 25 526 87 HOH HOH . Q 5 HOH A 26 527 89 HOH HOH . Q 5 HOH A 27 528 92 HOH HOH . Q 5 HOH A 28 529 96 HOH HOH . Q 5 HOH A 29 530 108 HOH HOH . Q 5 HOH A 30 531 110 HOH HOH . Q 5 HOH A 31 532 112 HOH HOH . Q 5 HOH A 32 533 114 HOH HOH . Q 5 HOH A 33 534 115 HOH HOH . Q 5 HOH A 34 535 118 HOH HOH . Q 5 HOH A 35 536 122 HOH HOH . Q 5 HOH A 36 537 123 HOH HOH . Q 5 HOH A 37 538 125 HOH HOH . Q 5 HOH A 38 539 126 HOH HOH . Q 5 HOH A 39 540 132 HOH HOH . Q 5 HOH A 40 541 134 HOH HOH . Q 5 HOH A 41 542 142 HOH HOH . Q 5 HOH A 42 543 148 HOH HOH . Q 5 HOH A 43 544 154 HOH HOH . Q 5 HOH A 44 545 160 HOH HOH . Q 5 HOH A 45 546 165 HOH HOH . Q 5 HOH A 46 547 173 HOH HOH . Q 5 HOH A 47 548 175 HOH HOH . R 5 HOH B 1 503 1 HOH HOH . R 5 HOH B 2 504 7 HOH HOH . R 5 HOH B 3 505 8 HOH HOH . R 5 HOH B 4 506 9 HOH HOH . R 5 HOH B 5 507 12 HOH HOH . R 5 HOH B 6 508 14 HOH HOH . R 5 HOH B 7 509 15 HOH HOH . R 5 HOH B 8 510 18 HOH HOH . R 5 HOH B 9 511 20 HOH HOH . R 5 HOH B 10 512 22 HOH HOH . R 5 HOH B 11 513 24 HOH HOH . R 5 HOH B 12 514 25 HOH HOH . R 5 HOH B 13 515 27 HOH HOH . R 5 HOH B 14 516 28 HOH HOH . R 5 HOH B 15 517 30 HOH HOH . R 5 HOH B 16 518 33 HOH HOH . R 5 HOH B 17 519 37 HOH HOH . R 5 HOH B 18 520 44 HOH HOH . R 5 HOH B 19 521 47 HOH HOH . R 5 HOH B 20 522 53 HOH HOH . R 5 HOH B 21 523 60 HOH HOH . R 5 HOH B 22 524 63 HOH HOH . R 5 HOH B 23 525 72 HOH HOH . R 5 HOH B 24 526 74 HOH HOH . R 5 HOH B 25 527 77 HOH HOH . R 5 HOH B 26 528 78 HOH HOH . R 5 HOH B 27 529 93 HOH HOH . R 5 HOH B 28 530 101 HOH HOH . R 5 HOH B 29 531 105 HOH HOH . R 5 HOH B 30 532 109 HOH HOH . R 5 HOH B 31 533 111 HOH HOH . R 5 HOH B 32 534 113 HOH HOH . R 5 HOH B 33 535 119 HOH HOH . R 5 HOH B 34 536 121 HOH HOH . R 5 HOH B 35 537 124 HOH HOH . R 5 HOH B 36 538 149 HOH HOH . R 5 HOH B 37 539 150 HOH HOH . R 5 HOH B 38 540 151 HOH HOH . R 5 HOH B 39 541 157 HOH HOH . R 5 HOH B 40 542 158 HOH HOH . R 5 HOH B 41 543 162 HOH HOH . R 5 HOH B 42 544 163 HOH HOH . R 5 HOH B 43 545 164 HOH HOH . R 5 HOH B 44 546 167 HOH HOH . R 5 HOH B 45 547 169 HOH HOH . R 5 HOH B 46 548 171 HOH HOH . S 5 HOH C 1 504 4 HOH HOH . S 5 HOH C 2 505 6 HOH HOH . S 5 HOH C 3 506 10 HOH HOH . S 5 HOH C 4 507 21 HOH HOH . S 5 HOH C 5 508 23 HOH HOH . S 5 HOH C 6 509 32 HOH HOH . S 5 HOH C 7 510 43 HOH HOH . S 5 HOH C 8 511 50 HOH HOH . S 5 HOH C 9 512 55 HOH HOH . S 5 HOH C 10 513 59 HOH HOH . S 5 HOH C 11 514 62 HOH HOH . S 5 HOH C 12 515 67 HOH HOH . S 5 HOH C 13 516 70 HOH HOH . S 5 HOH C 14 517 79 HOH HOH . S 5 HOH C 15 518 80 HOH HOH . S 5 HOH C 16 519 90 HOH HOH . S 5 HOH C 17 520 94 HOH HOH . S 5 HOH C 18 521 97 HOH HOH . S 5 HOH C 19 522 98 HOH HOH . S 5 HOH C 20 523 103 HOH HOH . S 5 HOH C 21 524 116 HOH HOH . S 5 HOH C 22 525 127 HOH HOH . S 5 HOH C 23 526 128 HOH HOH . S 5 HOH C 24 527 131 HOH HOH . S 5 HOH C 25 528 133 HOH HOH . S 5 HOH C 26 529 138 HOH HOH . S 5 HOH C 27 530 139 HOH HOH . S 5 HOH C 28 531 140 HOH HOH . S 5 HOH C 29 532 141 HOH HOH . S 5 HOH C 30 533 145 HOH HOH . S 5 HOH C 31 534 152 HOH HOH . S 5 HOH C 32 535 153 HOH HOH . S 5 HOH C 33 536 156 HOH HOH . S 5 HOH C 34 537 161 HOH HOH . S 5 HOH C 35 538 166 HOH HOH . S 5 HOH C 36 539 168 HOH HOH . S 5 HOH C 37 540 170 HOH HOH . T 5 HOH D 1 505 3 HOH HOH . T 5 HOH D 2 506 11 HOH HOH . T 5 HOH D 3 507 17 HOH HOH . T 5 HOH D 4 508 19 HOH HOH . T 5 HOH D 5 509 34 HOH HOH . T 5 HOH D 6 510 38 HOH HOH . T 5 HOH D 7 511 41 HOH HOH . T 5 HOH D 8 512 45 HOH HOH . T 5 HOH D 9 513 48 HOH HOH . T 5 HOH D 10 514 49 HOH HOH . T 5 HOH D 11 515 51 HOH HOH . T 5 HOH D 12 516 56 HOH HOH . T 5 HOH D 13 517 58 HOH HOH . T 5 HOH D 14 518 61 HOH HOH . T 5 HOH D 15 519 64 HOH HOH . T 5 HOH D 16 520 65 HOH HOH . T 5 HOH D 17 521 66 HOH HOH . T 5 HOH D 18 522 69 HOH HOH . T 5 HOH D 19 523 71 HOH HOH . T 5 HOH D 20 524 73 HOH HOH . T 5 HOH D 21 525 81 HOH HOH . T 5 HOH D 22 526 85 HOH HOH . T 5 HOH D 23 527 88 HOH HOH . T 5 HOH D 24 528 91 HOH HOH . T 5 HOH D 25 529 95 HOH HOH . T 5 HOH D 26 530 99 HOH HOH . T 5 HOH D 27 531 100 HOH HOH . T 5 HOH D 28 532 102 HOH HOH . T 5 HOH D 29 533 104 HOH HOH . T 5 HOH D 30 534 106 HOH HOH . T 5 HOH D 31 535 107 HOH HOH . T 5 HOH D 32 536 117 HOH HOH . T 5 HOH D 33 537 120 HOH HOH . T 5 HOH D 34 538 129 HOH HOH . T 5 HOH D 35 539 130 HOH HOH . T 5 HOH D 36 540 135 HOH HOH . T 5 HOH D 37 541 136 HOH HOH . T 5 HOH D 38 542 137 HOH HOH . T 5 HOH D 39 543 143 HOH HOH . T 5 HOH D 40 544 144 HOH HOH . T 5 HOH D 41 545 146 HOH HOH . T 5 HOH D 42 546 147 HOH HOH . T 5 HOH D 43 547 155 HOH HOH . T 5 HOH D 44 548 159 HOH HOH . T 5 HOH D 45 549 172 HOH HOH . T 5 HOH D 46 550 174 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x 119.65 _atom_site.Cartn_y 41.359 _atom_site.Cartn_z 69.806 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 402 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #