data_1K7F # _model_server_result.job_id GcL5umHY3ELx9wo45PGFgA _model_server_result.datetime_utc '2025-04-27 23:33:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k7f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 1K7F # _exptl.entry_id 1K7F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.7 _cell.angle_gamma 90 _cell.entry_id 1K7F _cell.length_a 183.664 _cell.length_b 59.074 _cell.length_c 67.467 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K7F _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 183.664 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 86 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 87 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 402 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.382 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 299 n y N1 C6 PLP sing 300 n y C2 C2A PLP sing 301 n n C2 C3 PLP sing 302 n y C2A H2A1 PLP sing 303 n n C2A H2A2 PLP sing 304 n n C2A H2A3 PLP sing 305 n n C3 O3 PLP sing 306 n n C3 C4 PLP doub 307 n y O3 HO3 PLP sing 308 n n C4 C4A PLP sing 309 n n C4 C5 PLP sing 310 n y C4A O4A PLP doub 311 n n C4A H4A PLP sing 312 n n C5 C6 PLP doub 313 n y C5 C5A PLP sing 314 n n C6 H6 PLP sing 315 n n C5A O4P PLP sing 316 n n C5A H5A1 PLP sing 317 n n C5A H5A2 PLP sing 318 n n O4P P PLP sing 319 n n P O1P PLP doub 320 n n P O2P PLP sing 321 n n P O3P PLP sing 322 n n O2P HOP2 PLP sing 323 n n O3P HOP3 PLP sing 324 n n # _atom_sites.entry_id 1K7F _atom_sites.fract_transf_matrix[1][1] 0.005445 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000447 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016928 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 IAV A 1 401 401 IAV IAV . D 4 PLP B 1 402 402 PLP PLP . E 5 HOH A 1 402 6 HOH HOH . E 5 HOH A 2 403 7 HOH HOH . E 5 HOH A 3 404 8 HOH HOH . E 5 HOH A 4 405 10 HOH HOH . E 5 HOH A 5 406 11 HOH HOH . E 5 HOH A 6 407 18 HOH HOH . E 5 HOH A 7 408 22 HOH HOH . E 5 HOH A 8 409 30 HOH HOH . E 5 HOH A 9 410 32 HOH HOH . E 5 HOH A 10 411 33 HOH HOH . E 5 HOH A 11 412 35 HOH HOH . E 5 HOH A 12 413 37 HOH HOH . E 5 HOH A 13 414 38 HOH HOH . E 5 HOH A 14 415 41 HOH HOH . E 5 HOH A 15 416 42 HOH HOH . E 5 HOH A 16 417 45 HOH HOH . E 5 HOH A 17 418 55 HOH HOH . E 5 HOH A 18 419 56 HOH HOH . E 5 HOH A 19 420 60 HOH HOH . E 5 HOH A 20 421 67 HOH HOH . E 5 HOH A 21 422 69 HOH HOH . E 5 HOH A 22 423 70 HOH HOH . E 5 HOH A 23 424 80 HOH HOH . E 5 HOH A 24 425 82 HOH HOH . E 5 HOH A 25 426 87 HOH HOH . E 5 HOH A 26 427 89 HOH HOH . E 5 HOH A 27 428 94 HOH HOH . E 5 HOH A 28 429 96 HOH HOH . E 5 HOH A 29 430 98 HOH HOH . E 5 HOH A 30 431 99 HOH HOH . E 5 HOH A 31 432 104 HOH HOH . E 5 HOH A 32 433 106 HOH HOH . E 5 HOH A 33 434 109 HOH HOH . E 5 HOH A 34 435 110 HOH HOH . E 5 HOH A 35 436 113 HOH HOH . E 5 HOH A 36 437 114 HOH HOH . E 5 HOH A 37 438 115 HOH HOH . E 5 HOH A 38 439 118 HOH HOH . E 5 HOH A 39 440 119 HOH HOH . E 5 HOH A 40 441 125 HOH HOH . E 5 HOH A 41 442 126 HOH HOH . E 5 HOH A 42 443 131 HOH HOH . E 5 HOH A 43 444 132 HOH HOH . E 5 HOH A 44 445 142 HOH HOH . E 5 HOH A 45 446 143 HOH HOH . E 5 HOH A 46 447 144 HOH HOH . E 5 HOH A 47 448 145 HOH HOH . E 5 HOH A 48 449 146 HOH HOH . E 5 HOH A 49 450 147 HOH HOH . E 5 HOH A 50 451 148 HOH HOH . E 5 HOH A 51 452 149 HOH HOH . F 5 HOH B 1 403 1 HOH HOH . F 5 HOH B 2 404 2 HOH HOH . F 5 HOH B 3 405 3 HOH HOH . F 5 HOH B 4 406 4 HOH HOH . F 5 HOH B 5 407 5 HOH HOH . F 5 HOH B 6 408 9 HOH HOH . F 5 HOH B 7 409 12 HOH HOH . F 5 HOH B 8 410 13 HOH HOH . F 5 HOH B 9 411 14 HOH HOH . F 5 HOH B 10 412 15 HOH HOH . F 5 HOH B 11 413 16 HOH HOH . F 5 HOH B 12 414 17 HOH HOH . F 5 HOH B 13 415 19 HOH HOH . F 5 HOH B 14 416 20 HOH HOH . F 5 HOH B 15 417 21 HOH HOH . F 5 HOH B 16 418 23 HOH HOH . F 5 HOH B 17 419 24 HOH HOH . F 5 HOH B 18 420 25 HOH HOH . F 5 HOH B 19 421 26 HOH HOH . F 5 HOH B 20 422 27 HOH HOH . F 5 HOH B 21 423 28 HOH HOH . F 5 HOH B 22 424 29 HOH HOH . F 5 HOH B 23 425 31 HOH HOH . F 5 HOH B 24 426 34 HOH HOH . F 5 HOH B 25 427 36 HOH HOH . F 5 HOH B 26 428 39 HOH HOH . F 5 HOH B 27 429 40 HOH HOH . F 5 HOH B 28 430 43 HOH HOH . F 5 HOH B 29 431 44 HOH HOH . F 5 HOH B 30 432 46 HOH HOH . F 5 HOH B 31 433 47 HOH HOH . F 5 HOH B 32 434 48 HOH HOH . F 5 HOH B 33 435 49 HOH HOH . F 5 HOH B 34 436 50 HOH HOH . F 5 HOH B 35 437 51 HOH HOH . F 5 HOH B 36 438 52 HOH HOH . F 5 HOH B 37 439 53 HOH HOH . F 5 HOH B 38 440 54 HOH HOH . F 5 HOH B 39 441 57 HOH HOH . F 5 HOH B 40 442 58 HOH HOH . F 5 HOH B 41 443 59 HOH HOH . F 5 HOH B 42 444 61 HOH HOH . F 5 HOH B 43 445 62 HOH HOH . F 5 HOH B 44 446 63 HOH HOH . F 5 HOH B 45 447 64 HOH HOH . F 5 HOH B 46 448 65 HOH HOH . F 5 HOH B 47 449 66 HOH HOH . F 5 HOH B 48 450 68 HOH HOH . F 5 HOH B 49 451 71 HOH HOH . F 5 HOH B 50 452 72 HOH HOH . F 5 HOH B 51 453 73 HOH HOH . F 5 HOH B 52 454 74 HOH HOH . F 5 HOH B 53 455 75 HOH HOH . F 5 HOH B 54 456 76 HOH HOH . F 5 HOH B 55 457 77 HOH HOH . F 5 HOH B 56 458 78 HOH HOH . F 5 HOH B 57 459 79 HOH HOH . F 5 HOH B 58 460 81 HOH HOH . F 5 HOH B 59 461 83 HOH HOH . F 5 HOH B 60 462 84 HOH HOH . F 5 HOH B 61 463 85 HOH HOH . F 5 HOH B 62 464 86 HOH HOH . F 5 HOH B 63 465 88 HOH HOH . F 5 HOH B 64 466 90 HOH HOH . F 5 HOH B 65 467 91 HOH HOH . F 5 HOH B 66 468 92 HOH HOH . F 5 HOH B 67 469 93 HOH HOH . F 5 HOH B 68 470 95 HOH HOH . F 5 HOH B 69 471 97 HOH HOH . F 5 HOH B 70 472 100 HOH HOH . F 5 HOH B 71 473 101 HOH HOH . F 5 HOH B 72 474 102 HOH HOH . F 5 HOH B 73 475 103 HOH HOH . F 5 HOH B 74 476 105 HOH HOH . F 5 HOH B 75 477 107 HOH HOH . F 5 HOH B 76 478 108 HOH HOH . F 5 HOH B 77 479 111 HOH HOH . F 5 HOH B 78 480 112 HOH HOH . F 5 HOH B 79 481 116 HOH HOH . F 5 HOH B 80 482 117 HOH HOH . F 5 HOH B 81 483 120 HOH HOH . F 5 HOH B 82 484 121 HOH HOH . F 5 HOH B 83 485 122 HOH HOH . F 5 HOH B 84 486 123 HOH HOH . F 5 HOH B 85 487 124 HOH HOH . F 5 HOH B 86 488 127 HOH HOH . F 5 HOH B 87 489 128 HOH HOH . F 5 HOH B 88 490 129 HOH HOH . F 5 HOH B 89 491 130 HOH HOH . F 5 HOH B 90 492 133 HOH HOH . F 5 HOH B 91 493 134 HOH HOH . F 5 HOH B 92 494 135 HOH HOH . F 5 HOH B 93 495 136 HOH HOH . F 5 HOH B 94 496 137 HOH HOH . F 5 HOH B 95 497 138 HOH HOH . F 5 HOH B 96 498 139 HOH HOH . F 5 HOH B 97 499 140 HOH HOH . F 5 HOH B 98 500 141 HOH HOH . F 5 HOH B 99 501 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . D 4 85.007 13.765 12.173 1 22.9 ? N1 PLP 402 B 1 HETATM 2 C C2 PLP . . . D 4 84.925 14.104 10.904 1 25.18 ? C2 PLP 402 B 1 HETATM 3 C C2A PLP . . . D 4 86.198 14.052 10.077 1 26.61 ? C2A PLP 402 B 1 HETATM 4 C C3 PLP . . . D 4 83.746 14.526 10.37 1 24.76 ? C3 PLP 402 B 1 HETATM 5 O O3 PLP . . . D 4 83.704 14.71 9.086 1 36.42 ? O3 PLP 402 B 1 HETATM 6 C C4 PLP . . . D 4 82.585 14.6 11.135 1 29.61 ? C4 PLP 402 B 1 HETATM 7 C C4A PLP . . . D 4 81.264 14.865 10.545 1 24.86 ? C4A PLP 402 B 1 HETATM 8 C C5 PLP . . . D 4 82.72 14.259 12.477 1 32.39 ? C5 PLP 402 B 1 HETATM 9 C C6 PLP . . . D 4 83.928 13.842 13.074 1 29.96 ? C6 PLP 402 B 1 HETATM 10 C C5A PLP . . . D 4 81.672 14.303 13.532 1 36.33 ? C5A PLP 402 B 1 HETATM 11 O O4P PLP . . . D 4 80.457 13.766 13.345 1 35.49 ? O4P PLP 402 B 1 HETATM 12 P P PLP . . . D 4 80.091 12.441 13.999 1 28.16 ? P PLP 402 B 1 HETATM 13 O O1P PLP . . . D 4 78.658 12.092 13.637 1 29.08 ? O1P PLP 402 B 1 HETATM 14 O O2P PLP . . . D 4 80.279 12.416 15.481 1 27.39 ? O2P PLP 402 B 1 HETATM 15 O O3P PLP . . . D 4 81.038 11.301 13.649 1 28.75 ? O3P PLP 402 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #