data_1K7L # _model_server_result.job_id VOqgSLNYpqMK89mpYu9_Gw _model_server_result.datetime_utc '2024-12-22 04:17:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k7l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":469}' # _entry.id 1K7L # _exptl.entry_id 1K7L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.906 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'YTTRIUM (III) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1K7L _cell.length_a 95.561 _cell.length_b 121.597 _cell.length_c 121.994 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K7L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,O 1 1 C,D,J,K,P,Q 2 1 E,F,L,M,R,S 3 1 G,H,N,T,U 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 L N N # _chem_comp.formula 'Y 3' _chem_comp.formula_weight 88.906 _chem_comp.id YT3 _chem_comp.mon_nstd_flag . _chem_comp.name 'YTTRIUM (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1K7L _atom_sites.fract_transf_matrix[1][1] 0.010465 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 544 A 1 469 301 544 544 . J 4 YT3 C 1 469 377 YT3 YT3 . K 3 544 C 1 470 401 544 544 . L 4 YT3 E 1 469 378 YT3 YT3 . M 3 544 E 1 501 501 544 544 . N 3 544 G 1 601 601 544 544 . O 5 HOH A 1 470 4 HOH HOH . O 5 HOH A 2 471 5 HOH HOH . O 5 HOH A 3 472 27 HOH HOH . O 5 HOH A 4 473 29 HOH HOH . O 5 HOH A 5 474 33 HOH HOH . O 5 HOH A 6 475 43 HOH HOH . O 5 HOH A 7 476 49 HOH HOH . O 5 HOH A 8 477 70 HOH HOH . O 5 HOH A 9 478 75 HOH HOH . O 5 HOH A 10 479 77 HOH HOH . O 5 HOH A 11 480 79 HOH HOH . O 5 HOH A 12 481 80 HOH HOH . O 5 HOH A 13 482 85 HOH HOH . O 5 HOH A 14 483 95 HOH HOH . O 5 HOH A 15 484 98 HOH HOH . O 5 HOH A 16 485 104 HOH HOH . O 5 HOH A 17 486 107 HOH HOH . O 5 HOH A 18 487 108 HOH HOH . O 5 HOH A 19 488 109 HOH HOH . O 5 HOH A 20 489 112 HOH HOH . O 5 HOH A 21 490 115 HOH HOH . O 5 HOH A 22 491 118 HOH HOH . O 5 HOH A 23 492 133 HOH HOH . O 5 HOH A 24 493 134 HOH HOH . O 5 HOH A 25 494 135 HOH HOH . O 5 HOH A 26 495 152 HOH HOH . O 5 HOH A 27 496 156 HOH HOH . O 5 HOH A 28 497 158 HOH HOH . O 5 HOH A 29 498 160 HOH HOH . O 5 HOH A 30 499 162 HOH HOH . O 5 HOH A 31 500 163 HOH HOH . O 5 HOH A 32 501 165 HOH HOH . O 5 HOH A 33 502 166 HOH HOH . O 5 HOH A 34 503 169 HOH HOH . O 5 HOH A 35 504 175 HOH HOH . O 5 HOH A 36 505 180 HOH HOH . O 5 HOH A 37 506 181 HOH HOH . O 5 HOH A 38 507 183 HOH HOH . O 5 HOH A 39 508 188 HOH HOH . O 5 HOH A 40 509 190 HOH HOH . O 5 HOH A 41 510 192 HOH HOH . O 5 HOH A 42 511 193 HOH HOH . O 5 HOH A 43 512 201 HOH HOH . O 5 HOH A 44 513 214 HOH HOH . O 5 HOH A 45 514 237 HOH HOH . O 5 HOH A 46 515 239 HOH HOH . P 5 HOH C 1 471 2 HOH HOH . P 5 HOH C 2 472 3 HOH HOH . P 5 HOH C 3 473 7 HOH HOH . P 5 HOH C 4 474 8 HOH HOH . P 5 HOH C 5 475 12 HOH HOH . P 5 HOH C 6 476 13 HOH HOH . P 5 HOH C 7 477 14 HOH HOH . P 5 HOH C 8 478 15 HOH HOH . P 5 HOH C 9 479 19 HOH HOH . P 5 HOH C 10 480 21 HOH HOH . P 5 HOH C 11 481 22 HOH HOH . P 5 HOH C 12 482 31 HOH HOH . P 5 HOH C 13 483 32 HOH HOH . P 5 HOH C 14 484 35 HOH HOH . P 5 HOH C 15 485 41 HOH HOH . P 5 HOH C 16 486 46 HOH HOH . P 5 HOH C 17 487 47 HOH HOH . P 5 HOH C 18 488 48 HOH HOH . P 5 HOH C 19 489 50 HOH HOH . P 5 HOH C 20 490 54 HOH HOH . P 5 HOH C 21 491 60 HOH HOH . P 5 HOH C 22 492 65 HOH HOH . P 5 HOH C 23 493 66 HOH HOH . P 5 HOH C 24 494 68 HOH HOH . P 5 HOH C 25 495 69 HOH HOH . P 5 HOH C 26 496 81 HOH HOH . P 5 HOH C 27 497 82 HOH HOH . P 5 HOH C 28 498 86 HOH HOH . P 5 HOH C 29 499 90 HOH HOH . P 5 HOH C 30 500 91 HOH HOH . P 5 HOH C 31 501 92 HOH HOH . P 5 HOH C 32 502 97 HOH HOH . P 5 HOH C 33 503 100 HOH HOH . P 5 HOH C 34 504 106 HOH HOH . P 5 HOH C 35 505 110 HOH HOH . P 5 HOH C 36 506 111 HOH HOH . P 5 HOH C 37 507 113 HOH HOH . P 5 HOH C 38 508 116 HOH HOH . P 5 HOH C 39 509 120 HOH HOH . P 5 HOH C 40 510 121 HOH HOH . P 5 HOH C 41 511 122 HOH HOH . P 5 HOH C 42 512 123 HOH HOH . P 5 HOH C 43 513 125 HOH HOH . P 5 HOH C 44 514 130 HOH HOH . P 5 HOH C 45 515 138 HOH HOH . P 5 HOH C 46 516 140 HOH HOH . P 5 HOH C 47 517 149 HOH HOH . P 5 HOH C 48 518 157 HOH HOH . P 5 HOH C 49 519 167 HOH HOH . P 5 HOH C 50 520 171 HOH HOH . P 5 HOH C 51 521 172 HOH HOH . P 5 HOH C 52 522 173 HOH HOH . P 5 HOH C 53 523 178 HOH HOH . P 5 HOH C 54 524 182 HOH HOH . P 5 HOH C 55 525 185 HOH HOH . P 5 HOH C 56 526 191 HOH HOH . P 5 HOH C 57 527 194 HOH HOH . P 5 HOH C 58 528 202 HOH HOH . P 5 HOH C 59 529 203 HOH HOH . P 5 HOH C 60 530 205 HOH HOH . P 5 HOH C 61 531 207 HOH HOH . P 5 HOH C 62 532 210 HOH HOH . P 5 HOH C 63 533 211 HOH HOH . P 5 HOH C 64 534 215 HOH HOH . P 5 HOH C 65 535 222 HOH HOH . P 5 HOH C 66 536 223 HOH HOH . P 5 HOH C 67 537 224 HOH HOH . P 5 HOH C 68 538 225 HOH HOH . P 5 HOH C 69 539 226 HOH HOH . P 5 HOH C 70 540 227 HOH HOH . P 5 HOH C 71 541 228 HOH HOH . P 5 HOH C 72 542 229 HOH HOH . P 5 HOH C 73 543 231 HOH HOH . P 5 HOH C 74 544 235 HOH HOH . P 5 HOH C 75 545 242 HOH HOH . P 5 HOH C 76 546 243 HOH HOH . Q 5 HOH D 1 10 10 HOH HOH . Q 5 HOH D 2 18 18 HOH HOH . Q 5 HOH D 3 51 51 HOH HOH . Q 5 HOH D 4 58 58 HOH HOH . Q 5 HOH D 5 168 168 HOH HOH . Q 5 HOH D 6 184 184 HOH HOH . Q 5 HOH D 7 232 232 HOH HOH . R 5 HOH E 1 502 1 HOH HOH . R 5 HOH E 2 503 17 HOH HOH . R 5 HOH E 3 504 20 HOH HOH . R 5 HOH E 4 505 28 HOH HOH . R 5 HOH E 5 506 36 HOH HOH . R 5 HOH E 6 507 39 HOH HOH . R 5 HOH E 7 508 42 HOH HOH . R 5 HOH E 8 509 61 HOH HOH . R 5 HOH E 9 510 62 HOH HOH . R 5 HOH E 10 511 63 HOH HOH . R 5 HOH E 11 512 72 HOH HOH . R 5 HOH E 12 513 73 HOH HOH . R 5 HOH E 13 514 74 HOH HOH . R 5 HOH E 14 515 76 HOH HOH . R 5 HOH E 15 516 78 HOH HOH . R 5 HOH E 16 517 89 HOH HOH . R 5 HOH E 17 518 94 HOH HOH . R 5 HOH E 18 519 101 HOH HOH . R 5 HOH E 19 520 105 HOH HOH . R 5 HOH E 20 521 119 HOH HOH . R 5 HOH E 21 522 126 HOH HOH . R 5 HOH E 22 523 128 HOH HOH . R 5 HOH E 23 524 136 HOH HOH . R 5 HOH E 24 525 141 HOH HOH . R 5 HOH E 25 526 143 HOH HOH . R 5 HOH E 26 527 144 HOH HOH . R 5 HOH E 27 528 145 HOH HOH . R 5 HOH E 28 529 148 HOH HOH . R 5 HOH E 29 530 150 HOH HOH . R 5 HOH E 30 531 153 HOH HOH . R 5 HOH E 31 532 155 HOH HOH . R 5 HOH E 32 533 159 HOH HOH . R 5 HOH E 33 534 170 HOH HOH . R 5 HOH E 34 535 174 HOH HOH . R 5 HOH E 35 536 177 HOH HOH . R 5 HOH E 36 537 186 HOH HOH . R 5 HOH E 37 538 189 HOH HOH . R 5 HOH E 38 539 195 HOH HOH . R 5 HOH E 39 540 196 HOH HOH . R 5 HOH E 40 541 199 HOH HOH . R 5 HOH E 41 542 204 HOH HOH . R 5 HOH E 42 543 206 HOH HOH . R 5 HOH E 43 544 212 HOH HOH . R 5 HOH E 44 545 213 HOH HOH . R 5 HOH E 45 546 217 HOH HOH . R 5 HOH E 46 547 218 HOH HOH . R 5 HOH E 47 548 219 HOH HOH . R 5 HOH E 48 549 221 HOH HOH . R 5 HOH E 49 550 233 HOH HOH . R 5 HOH E 50 551 234 HOH HOH . R 5 HOH E 51 552 236 HOH HOH . S 5 HOH F 1 83 83 HOH HOH . T 5 HOH G 1 602 6 HOH HOH . T 5 HOH G 2 603 9 HOH HOH . T 5 HOH G 3 604 11 HOH HOH . T 5 HOH G 4 605 16 HOH HOH . T 5 HOH G 5 606 23 HOH HOH . T 5 HOH G 6 607 24 HOH HOH . T 5 HOH G 7 608 25 HOH HOH . T 5 HOH G 8 609 26 HOH HOH . T 5 HOH G 9 610 30 HOH HOH . T 5 HOH G 10 611 34 HOH HOH . T 5 HOH G 11 612 37 HOH HOH . T 5 HOH G 12 613 38 HOH HOH . T 5 HOH G 13 614 40 HOH HOH . T 5 HOH G 14 615 45 HOH HOH . T 5 HOH G 15 616 52 HOH HOH . T 5 HOH G 16 617 55 HOH HOH . T 5 HOH G 17 618 56 HOH HOH . T 5 HOH G 18 619 57 HOH HOH . T 5 HOH G 19 620 64 HOH HOH . T 5 HOH G 20 621 71 HOH HOH . T 5 HOH G 21 622 84 HOH HOH . T 5 HOH G 22 623 87 HOH HOH . T 5 HOH G 23 624 88 HOH HOH . T 5 HOH G 24 625 93 HOH HOH . T 5 HOH G 25 626 96 HOH HOH . T 5 HOH G 26 627 99 HOH HOH . T 5 HOH G 27 628 102 HOH HOH . T 5 HOH G 28 629 103 HOH HOH . T 5 HOH G 29 630 114 HOH HOH . T 5 HOH G 30 631 117 HOH HOH . T 5 HOH G 31 632 127 HOH HOH . T 5 HOH G 32 633 129 HOH HOH . T 5 HOH G 33 634 131 HOH HOH . T 5 HOH G 34 635 132 HOH HOH . T 5 HOH G 35 636 137 HOH HOH . T 5 HOH G 36 637 139 HOH HOH . T 5 HOH G 37 638 142 HOH HOH . T 5 HOH G 38 639 146 HOH HOH . T 5 HOH G 39 640 147 HOH HOH . T 5 HOH G 40 641 151 HOH HOH . T 5 HOH G 41 642 154 HOH HOH . T 5 HOH G 42 643 161 HOH HOH . T 5 HOH G 43 644 164 HOH HOH . T 5 HOH G 44 645 176 HOH HOH . T 5 HOH G 45 646 179 HOH HOH . T 5 HOH G 46 647 187 HOH HOH . T 5 HOH G 47 648 197 HOH HOH . T 5 HOH G 48 649 198 HOH HOH . T 5 HOH G 49 650 200 HOH HOH . T 5 HOH G 50 651 208 HOH HOH . T 5 HOH G 51 652 209 HOH HOH . T 5 HOH G 52 653 216 HOH HOH . T 5 HOH G 53 654 220 HOH HOH . T 5 HOH G 54 655 230 HOH HOH . T 5 HOH G 55 656 238 HOH HOH . T 5 HOH G 56 657 240 HOH HOH . T 5 HOH G 57 658 241 HOH HOH . U 5 HOH H 1 44 44 HOH HOH . U 5 HOH H 2 59 59 HOH HOH . U 5 HOH H 3 67 67 HOH HOH . U 5 HOH H 4 124 124 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol Y _atom_site.label_atom_id Y _atom_site.label_comp_id YT3 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x 24.29 _atom_site.Cartn_y -31.012 _atom_site.Cartn_z 1.373 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id Y _atom_site.auth_comp_id YT3 _atom_site.auth_seq_id 469 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #