data_1K83 # _model_server_result.job_id rmAknRxeMcd3WqN-PqQ7bg _model_server_result.datetime_utc '2024-11-22 06:49:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k83 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":3009}' # _entry.id 1K83 # _exptl.entry_id 1K83 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1K83 _cell.length_a 122.51 _cell.length_b 222.48 _cell.length_c 374.23 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K83 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details undecameric _pdbx_struct_assembly.oligomeric_count 11 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 13 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 K C ILX 1 M ILX 1 1_555 K N TRX 2 M TRX 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale2 K N ILX 1 M ILX 1 1_555 K C HYP 8 M HYP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 K C TRX 2 M TRX 2 1_555 K N GLY 3 M GLY 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? covale ? covale4 K CD1 TRX 2 M TRX 2 1_555 K SG CSX 6 M CSX 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? covale ? covale5 K C GLY 5 M GLY 5 1_555 K N CSX 6 M CSX 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.288 ? covale ? covale6 K C CSX 6 M CSX 6 1_555 K N ASN 7 M ASN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? covale ? covale7 K C ASN 7 M ASN 7 1_555 K N HYP 8 M HYP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? metalc ? metalc1 A SG CYS 67 A CYS 67 1_555 M ZN ZN . A ZN 3008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc2 A SG CYS 70 A CYS 70 1_555 M ZN ZN . A ZN 3008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc3 A SG CYS 77 A CYS 77 1_555 M ZN ZN . A ZN 3008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc4 A NE2 HIS 80 A HIS 80 1_555 M ZN ZN . A ZN 3008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc5 A SG CYS 107 A CYS 107 1_555 L ZN ZN . A ZN 3006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc6 A SG CYS 110 A CYS 110 1_555 L ZN ZN . A ZN 3006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc7 A SG CYS 148 A CYS 148 1_555 L ZN ZN . A ZN 3006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc8 A SG CYS 167 A CYS 167 1_555 L ZN ZN . A ZN 3006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc9 A OD1 ASP 481 A ASP 481 1_555 N MN MN . A MN 3009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc10 A OD2 ASP 485 A ASP 485 1_555 N MN MN . A MN 3009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc11 B SG CYS 1163 B CYS 1163 1_555 O ZN ZN . B ZN 3007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc12 B SG CYS 1166 B CYS 1166 1_555 O ZN ZN . B ZN 3007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc13 B SG CYS 1182 B CYS 1182 1_555 O ZN ZN . B ZN 3007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc14 B SG CYS 1185 B CYS 1185 1_555 O ZN ZN . B ZN 3007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc15 C SG CYS 86 C CYS 86 1_555 P ZN ZN . C ZN 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc16 C SG CYS 88 C CYS 88 1_555 P ZN ZN . C ZN 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc17 C SG CYS 92 C CYS 92 1_555 P ZN ZN . C ZN 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc18 C SG CYS 95 C CYS 95 1_555 P ZN ZN . C ZN 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc19 G SG CYS 7 I CYS 7 1_555 Q ZN ZN . I ZN 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc20 G SG CYS 10 I CYS 10 1_555 Q ZN ZN . I ZN 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc21 G SG CYS 29 I CYS 29 1_555 Q ZN ZN . I ZN 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc22 G SG CYS 32 I CYS 32 1_555 Q ZN ZN . I ZN 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc23 G SG CYS 75 I CYS 75 1_555 R ZN ZN . I ZN 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc24 G SG CYS 78 I CYS 78 1_555 R ZN ZN . I ZN 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc25 G SG CYS 103 I CYS 103 1_555 R ZN ZN . I ZN 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc26 G SG CYS 106 I CYS 106 1_555 R ZN ZN . I ZN 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc27 H SG CYS 7 J CYS 7 1_555 S ZN ZN . J ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc28 H SG CYS 10 J CYS 10 1_555 S ZN ZN . J ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc29 H SG CYS 45 J CYS 45 1_555 S ZN ZN . J ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc30 H SG CYS 46 J CYS 46 1_555 S ZN ZN . J ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc31 J SG CYS 31 L CYS 31 1_555 T ZN ZN . L ZN 3005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc32 J SG CYS 34 L CYS 34 1_555 T ZN ZN . L ZN 3005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc33 J SG CYS 48 L CYS 48 1_555 T ZN ZN . L ZN 3005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc34 J O CYS 51 L CYS 51 1_555 T ZN ZN . L ZN 3005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1K83 _atom_sites.fract_transf_matrix[1][1] 0.008163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004495 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 12 ZN A 1 3006 3006 ZN ZN . M 12 ZN A 1 3008 3008 ZN ZN . N 13 MN A 1 3009 3009 MN MN . O 12 ZN B 1 3007 3007 ZN ZN . P 12 ZN C 1 3002 3002 ZN ZN . Q 12 ZN I 1 3003 3003 ZN ZN . R 12 ZN I 1 3004 3004 ZN ZN . S 12 ZN J 1 3001 3001 ZN ZN . T 12 ZN L 1 3005 3005 ZN ZN . U 14 HOH A 1 2001 2001 HOH HOH . U 14 HOH A 2 2002 2002 HOH HOH . U 14 HOH A 3 2003 2003 HOH HOH . U 14 HOH A 4 2004 2004 HOH HOH . U 14 HOH A 5 2005 2005 HOH HOH . U 14 HOH A 6 2006 2006 HOH HOH . U 14 HOH A 7 2007 2007 HOH HOH . U 14 HOH A 8 2008 2008 HOH HOH . U 14 HOH A 9 2009 2009 HOH HOH . U 14 HOH A 10 2010 2010 HOH HOH . U 14 HOH A 11 2011 2011 HOH HOH . U 14 HOH A 12 2012 2012 HOH HOH . U 14 HOH A 13 2013 2013 HOH HOH . U 14 HOH A 14 2014 2014 HOH HOH . U 14 HOH A 15 2015 2015 HOH HOH . U 14 HOH A 16 2016 2016 HOH HOH . U 14 HOH A 17 2017 2017 HOH HOH . U 14 HOH A 18 2018 2018 HOH HOH . U 14 HOH A 19 2019 2019 HOH HOH . U 14 HOH A 20 2020 2020 HOH HOH . U 14 HOH A 21 2021 2021 HOH HOH . U 14 HOH A 22 2022 2022 HOH HOH . U 14 HOH A 23 2023 2023 HOH HOH . U 14 HOH A 24 2024 2024 HOH HOH . U 14 HOH A 25 2025 2025 HOH HOH . U 14 HOH A 26 2026 2026 HOH HOH . U 14 HOH A 27 2027 2027 HOH HOH . U 14 HOH A 28 2028 2028 HOH HOH . U 14 HOH A 29 2029 2029 HOH HOH . U 14 HOH A 30 2030 2030 HOH HOH . U 14 HOH A 31 2031 2031 HOH HOH . V 14 HOH B 1 2001 2001 HOH HOH . V 14 HOH B 2 2002 2002 HOH HOH . V 14 HOH B 3 2003 2003 HOH HOH . V 14 HOH B 4 2004 2004 HOH HOH . V 14 HOH B 5 2005 2005 HOH HOH . V 14 HOH B 6 2006 2006 HOH HOH . V 14 HOH B 7 2007 2007 HOH HOH . V 14 HOH B 8 2008 2008 HOH HOH . V 14 HOH B 9 2009 2009 HOH HOH . V 14 HOH B 10 2010 2010 HOH HOH . V 14 HOH B 11 2011 2011 HOH HOH . V 14 HOH B 12 2012 2012 HOH HOH . V 14 HOH B 13 2013 2013 HOH HOH . V 14 HOH B 14 2014 2014 HOH HOH . V 14 HOH B 15 2015 2015 HOH HOH . V 14 HOH B 16 2016 2016 HOH HOH . V 14 HOH B 17 2017 2017 HOH HOH . V 14 HOH B 18 2018 2018 HOH HOH . V 14 HOH B 19 2019 2019 HOH HOH . V 14 HOH B 20 2020 2020 HOH HOH . V 14 HOH B 21 2021 2021 HOH HOH . V 14 HOH B 22 2022 2022 HOH HOH . V 14 HOH B 23 2023 2023 HOH HOH . W 14 HOH C 1 2001 2001 HOH HOH . W 14 HOH C 2 2002 2002 HOH HOH . W 14 HOH C 3 2003 2003 HOH HOH . X 14 HOH E 1 2001 2001 HOH HOH . X 14 HOH E 2 2002 2002 HOH HOH . X 14 HOH E 3 2003 2003 HOH HOH . X 14 HOH E 4 2004 2004 HOH HOH . X 14 HOH E 5 2005 2005 HOH HOH . X 14 HOH E 6 2006 2006 HOH HOH . Y 14 HOH F 1 2001 2001 HOH HOH . Y 14 HOH F 2 2002 2002 HOH HOH . Y 14 HOH F 3 2003 2003 HOH HOH . Y 14 HOH F 4 2004 2004 HOH HOH . Z 14 HOH J 1 2001 2001 HOH HOH . AA 14 HOH M 1 2001 2001 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 13 _atom_site.Cartn_x 82.955 _atom_site.Cartn_y 46.149 _atom_site.Cartn_z 40.531 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 149.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 3009 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 73 _model_server_stats.query_time_ms 604 _model_server_stats.encode_time_ms 26 _model_server_stats.element_count 1 #