data_1K8P # _model_server_result.job_id lQT6nSo4LFGI9vDI99SGvA _model_server_result.datetime_utc '2024-11-22 11:55:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k8p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":26}' # _entry.id 1K8P # _exptl.entry_id 1K8P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1K8P _cell.length_a 56.607 _cell.length_b 56.607 _cell.length_c 40.546 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K8P _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' BRU 1 A BRU 1 1_555 A P DA 2 A DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? covale ? covale2 A O3' DG 5 A DG 5 1_555 A P BRU 6 A BRU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? covale ? covale3 A O3' BRU 6 A BRU 6 1_555 A P DT 7 A DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? covale ? covale4 B O3' BRU 1 B BRU 13 1_555 B P DA 2 B DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? covale ? covale5 B O3' DG 5 B DG 17 1_555 B P BRU 6 B BRU 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? covale ? covale6 B O3' BRU 6 B BRU 18 1_555 B P DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.634 ? metalc ? metalc1 A O6 DG 3 A DG 3 1_555 D K K . A K 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc2 A O6 DG 4 A DG 4 1_555 C K K . A K 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc3 A O6 DG 4 A DG 4 1_555 D K K . A K 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc4 A O6 DG 5 A DG 5 1_555 C K K . A K 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc5 A O4 DT 7 A DT 7 1_555 E NA NA . A NA 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc6 A O6 DG 9 A DG 9 1_555 D K K . A K 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc7 A O6 DG 10 A DG 10 1_555 C K K . A K 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc8 A O6 DG 10 A DG 10 1_555 D K K . A K 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc9 A O6 DG 11 A DG 11 1_555 C K K . A K 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc10 C K K . A K 25 1_555 D K K . A K 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.482 ? metalc ? metalc11 C K K . A K 25 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc12 C K K . A K 25 1_555 B O6 DG 5 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc13 C K K . A K 25 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc14 C K K . A K 25 1_555 B O6 DG 11 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc15 D K K . A K 26 1_555 B O6 DG 3 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc16 D K K . A K 26 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc17 D K K . A K 26 1_555 B O6 DG 9 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc18 D K K . A K 26 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc19 D K K . A K 26 1_555 G O HOH . B HOH 2024 4_557 ? ? ? ? ? ? ? ? ? ? ? ? 3.137 ? hydrog TYPE_6_PAIR hydrog1 A N1 DG 3 A DG 3 1_555 A O6 DG 9 A DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog2 A N2 DG 3 A DG 3 1_555 A N7 DG 9 A DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog3 A N7 DG 3 A DG 3 1_555 B N2 DG 9 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog4 A O6 DG 3 A DG 3 1_555 B N1 DG 9 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog5 A N1 DG 4 A DG 4 1_555 A O6 DG 10 A DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog6 A N2 DG 4 A DG 4 1_555 A N7 DG 10 A DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog7 A N7 DG 4 A DG 4 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog8 A O6 DG 4 A DG 4 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog9 A N1 DG 5 A DG 5 1_555 A O6 DG 11 A DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog10 A N2 DG 5 A DG 5 1_555 A N7 DG 11 A DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog11 A N7 DG 5 A DG 5 1_555 B N2 DG 11 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog12 A O6 DG 5 A DG 5 1_555 B N1 DG 11 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog13 A N1 DG 9 A DG 9 1_555 B O6 DG 3 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog14 A N2 DG 9 A DG 9 1_555 B N7 DG 3 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog15 A N1 DG 10 A DG 10 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog16 A N2 DG 10 A DG 10 1_555 B N7 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DT MISPAIR' hydrog17 A N2 DG 11 A DG 11 1_555 A O4 DT 12 A DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog18 A N1 DG 11 A DG 11 1_555 B O6 DG 5 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog19 A N2 DG 11 A DG 11 1_555 B N7 DG 5 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog20 B N1 DG 3 B DG 15 1_555 B O6 DG 9 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog21 B N2 DG 3 B DG 15 1_555 B N7 DG 9 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog22 B N1 DG 4 B DG 16 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog23 B N2 DG 4 B DG 16 1_555 B N7 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog24 B N1 DG 5 B DG 17 1_555 B O6 DG 11 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog25 B N2 DG 5 B DG 17 1_555 B N7 DG 11 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1K8P _atom_sites.fract_transf_matrix[1][1] 0.017666 _atom_sites.fract_transf_matrix[1][2] 0.010199 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020399 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024663 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 25 25 K K . D 2 K A 1 26 26 K K . E 3 NA A 1 27 27 NA NA . F 4 HOH A 1 2001 2001 HOH HOH . F 4 HOH A 2 2002 2002 HOH HOH . F 4 HOH A 3 2003 2003 HOH HOH . F 4 HOH A 4 2007 2007 HOH HOH . F 4 HOH A 5 2008 2008 HOH HOH . F 4 HOH A 6 2009 2009 HOH HOH . F 4 HOH A 7 2010 2010 HOH HOH . F 4 HOH A 8 2013 2013 HOH HOH . F 4 HOH A 9 2015 2015 HOH HOH . F 4 HOH A 10 2016 2016 HOH HOH . F 4 HOH A 11 2017 2017 HOH HOH . F 4 HOH A 12 2019 2019 HOH HOH . F 4 HOH A 13 2020 2020 HOH HOH . F 4 HOH A 14 2022 2022 HOH HOH . F 4 HOH A 15 2023 2023 HOH HOH . F 4 HOH A 16 2026 2026 HOH HOH . F 4 HOH A 17 2029 2029 HOH HOH . F 4 HOH A 18 2035 2035 HOH HOH . F 4 HOH A 19 2036 2036 HOH HOH . F 4 HOH A 20 2037 2037 HOH HOH . F 4 HOH A 21 2038 2038 HOH HOH . F 4 HOH A 22 2039 2039 HOH HOH . F 4 HOH A 23 2040 2040 HOH HOH . F 4 HOH A 24 2042 2042 HOH HOH . F 4 HOH A 25 2043 2043 HOH HOH . F 4 HOH A 26 2047 2047 HOH HOH . F 4 HOH A 27 2049 2049 HOH HOH . G 4 HOH B 1 2004 2004 HOH HOH . G 4 HOH B 2 2005 2005 HOH HOH . G 4 HOH B 3 2006 2006 HOH HOH . G 4 HOH B 4 2011 2011 HOH HOH . G 4 HOH B 5 2012 2012 HOH HOH . G 4 HOH B 6 2014 2014 HOH HOH . G 4 HOH B 7 2018 2018 HOH HOH . G 4 HOH B 8 2021 2021 HOH HOH . G 4 HOH B 9 2024 2024 HOH HOH . G 4 HOH B 10 2025 2025 HOH HOH . G 4 HOH B 11 2027 2027 HOH HOH . G 4 HOH B 12 2028 2028 HOH HOH . G 4 HOH B 13 2030 2030 HOH HOH . G 4 HOH B 14 2031 2031 HOH HOH . G 4 HOH B 15 2032 2032 HOH HOH . G 4 HOH B 16 2033 2033 HOH HOH . G 4 HOH B 17 2034 2034 HOH HOH . G 4 HOH B 18 2041 2041 HOH HOH . G 4 HOH B 19 2044 2044 HOH HOH . G 4 HOH B 20 2045 2045 HOH HOH . G 4 HOH B 21 2046 2046 HOH HOH . G 4 HOH B 22 2048 2048 HOH HOH . G 4 HOH B 23 2050 2050 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.964 _atom_site.Cartn_y 20.373 _atom_site.Cartn_z 36.261 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 26 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #