data_1K9U # _model_server_result.job_id 1Df5lQSBuqWLDI2h9HQlpw _model_server_result.datetime_utc '2024-12-14 07:56:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k9u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1003}' # _entry.id 1K9U # _exptl.entry_id 1K9U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.23 _cell.angle_gamma 90 _cell.entry_id 1K9U _cell.length_a 31.084 _cell.length_b 56.205 _cell.length_c 37.238 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K9U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 13 A ASP 13 1_555 D CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc2 A OD1 ASN 15 A ASN 15 1_555 D CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc3 A OD1 ASP 17 A ASP 17 1_555 D CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc4 A O LYS 19 A LYS 19 1_555 D CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc5 A OE1 GLU 24 A GLU 24 1_555 D CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc6 A OE2 GLU 24 A GLU 24 1_555 D CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc7 A OD1 ASP 48 A ASP 48 1_555 E CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc8 A OD1 ASP 50 A ASP 50 1_555 E CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc9 A OD1 ASP 52 A ASP 52 1_555 E CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc10 A O PHE 54 A PHE 54 1_555 E CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc11 A OE2 GLU 59 A GLU 59 1_555 E CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc12 A OE1 GLU 59 A GLU 59 1_555 E CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc13 D CA CA . A CA 1001 1_555 J O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc14 E CA CA . A CA 1002 1_555 J O HOH . A HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc15 B OD1 ASP 13 B ASP 13 1_555 H CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc16 B OD1 ASN 15 B ASN 15 1_555 H CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc17 B OD1 ASP 17 B ASP 17 1_555 H CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc18 B O LYS 19 B LYS 19 1_555 H CA CA . B CA 1003 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc19 B O LYS 19 B LYS 19 1_555 H CA CA . B CA 1003 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc20 B OE1 GLU 24 B GLU 24 1_555 H CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc21 B OE2 GLU 24 B GLU 24 1_555 H CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc22 B OD1 ASP 48 B ASP 48 1_555 I CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc23 B OD1 ASP 50 B ASP 50 1_555 I CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc24 B OD1 ASP 52 B ASP 52 1_555 I CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc25 B O PHE 54 B PHE 54 1_555 I CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc26 B OE2 GLU 59 B GLU 59 1_555 I CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc27 B OE1 GLU 59 B GLU 59 1_555 I CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc28 H CA CA . B CA 1003 1_555 K O HOH . B HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc29 I CA CA . B CA 1004 1_555 K O HOH . B HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1K9U _atom_sites.fract_transf_matrix[1][1] 0.032171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000129 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 2001 2001 SO4 SO4 . D 3 CA A 1 1001 1001 CA CA . E 3 CA A 1 1002 1002 CA CA . F 2 SO4 B 1 2002 2002 SO4 SO4 . G 2 SO4 B 1 2003 2003 SO4 SO4 . H 3 CA B 1 1003 1003 CA CA . I 3 CA B 1 1004 1004 CA CA . J 4 HOH A 1 2002 201 HOH HOH . J 4 HOH A 2 2003 202 HOH HOH . J 4 HOH A 3 2004 4 HOH HOH . J 4 HOH A 4 2005 6 HOH HOH . J 4 HOH A 5 2006 7 HOH HOH . J 4 HOH A 6 2007 13 HOH HOH . J 4 HOH A 7 2008 14 HOH HOH . J 4 HOH A 8 2009 15 HOH HOH . J 4 HOH A 9 2010 16 HOH HOH . J 4 HOH A 10 2011 17 HOH HOH . J 4 HOH A 11 2012 19 HOH HOH . J 4 HOH A 12 2013 23 HOH HOH . J 4 HOH A 13 2014 26 HOH HOH . J 4 HOH A 14 2015 29 HOH HOH . J 4 HOH A 15 2016 32 HOH HOH . J 4 HOH A 16 2017 34 HOH HOH . J 4 HOH A 17 2018 37 HOH HOH . J 4 HOH A 18 2019 39 HOH HOH . J 4 HOH A 19 2020 41 HOH HOH . J 4 HOH A 20 2021 45 HOH HOH . J 4 HOH A 21 2022 47 HOH HOH . J 4 HOH A 22 2023 48 HOH HOH . J 4 HOH A 23 2024 49 HOH HOH . J 4 HOH A 24 2025 50 HOH HOH . J 4 HOH A 25 2026 53 HOH HOH . J 4 HOH A 26 2027 54 HOH HOH . J 4 HOH A 27 2028 56 HOH HOH . J 4 HOH A 28 2029 59 HOH HOH . J 4 HOH A 29 2030 61 HOH HOH . J 4 HOH A 30 2031 65 HOH HOH . J 4 HOH A 31 2032 66 HOH HOH . J 4 HOH A 32 2033 67 HOH HOH . J 4 HOH A 33 2034 70 HOH HOH . J 4 HOH A 34 2035 71 HOH HOH . J 4 HOH A 35 2036 73 HOH HOH . J 4 HOH A 36 2037 74 HOH HOH . J 4 HOH A 37 2038 75 HOH HOH . J 4 HOH A 38 2039 76 HOH HOH . J 4 HOH A 39 2040 79 HOH HOH . J 4 HOH A 40 2041 82 HOH HOH . J 4 HOH A 41 2042 83 HOH HOH . J 4 HOH A 42 2043 86 HOH HOH . J 4 HOH A 43 2044 87 HOH HOH . J 4 HOH A 44 2045 88 HOH HOH . J 4 HOH A 45 2046 92 HOH HOH . J 4 HOH A 46 2047 95 HOH HOH . J 4 HOH A 47 2048 97 HOH HOH . J 4 HOH A 48 2049 100 HOH HOH . J 4 HOH A 49 2050 101 HOH HOH . J 4 HOH A 50 2051 102 HOH HOH . J 4 HOH A 51 2052 103 HOH HOH . J 4 HOH A 52 2053 105 HOH HOH . J 4 HOH A 53 2054 106 HOH HOH . J 4 HOH A 54 2055 107 HOH HOH . J 4 HOH A 55 2056 109 HOH HOH . J 4 HOH A 56 2057 111 HOH HOH . J 4 HOH A 57 2058 114 HOH HOH . J 4 HOH A 58 2059 115 HOH HOH . J 4 HOH A 59 2060 116 HOH HOH . J 4 HOH A 60 2061 117 HOH HOH . J 4 HOH A 61 2062 118 HOH HOH . J 4 HOH A 62 2063 120 HOH HOH . J 4 HOH A 63 2064 122 HOH HOH . J 4 HOH A 64 2065 124 HOH HOH . J 4 HOH A 65 2066 125 HOH HOH . J 4 HOH A 66 2067 129 HOH HOH . J 4 HOH A 67 2068 130 HOH HOH . J 4 HOH A 68 2069 132 HOH HOH . J 4 HOH A 69 2070 133 HOH HOH . J 4 HOH A 70 2071 134 HOH HOH . J 4 HOH A 71 2072 142 HOH HOH . J 4 HOH A 72 2073 143 HOH HOH . J 4 HOH A 73 2074 144 HOH HOH . J 4 HOH A 74 2075 151 HOH HOH . J 4 HOH A 75 2076 153 HOH HOH . K 4 HOH B 1 2004 203 HOH HOH . K 4 HOH B 2 2005 204 HOH HOH . K 4 HOH B 3 2006 1 HOH HOH . K 4 HOH B 4 2007 2 HOH HOH . K 4 HOH B 5 2008 3 HOH HOH . K 4 HOH B 6 2009 5 HOH HOH . K 4 HOH B 7 2010 8 HOH HOH . K 4 HOH B 8 2011 9 HOH HOH . K 4 HOH B 9 2012 10 HOH HOH . K 4 HOH B 10 2013 11 HOH HOH . K 4 HOH B 11 2014 12 HOH HOH . K 4 HOH B 12 2015 18 HOH HOH . K 4 HOH B 13 2016 20 HOH HOH . K 4 HOH B 14 2017 21 HOH HOH . K 4 HOH B 15 2018 22 HOH HOH . K 4 HOH B 16 2019 24 HOH HOH . K 4 HOH B 17 2020 25 HOH HOH . K 4 HOH B 18 2021 27 HOH HOH . K 4 HOH B 19 2022 28 HOH HOH . K 4 HOH B 20 2023 30 HOH HOH . K 4 HOH B 21 2024 31 HOH HOH . K 4 HOH B 22 2025 33 HOH HOH . K 4 HOH B 23 2026 35 HOH HOH . K 4 HOH B 24 2027 36 HOH HOH . K 4 HOH B 25 2028 38 HOH HOH . K 4 HOH B 26 2029 40 HOH HOH . K 4 HOH B 27 2030 42 HOH HOH . K 4 HOH B 28 2031 43 HOH HOH . K 4 HOH B 29 2032 44 HOH HOH . K 4 HOH B 30 2033 46 HOH HOH . K 4 HOH B 31 2034 51 HOH HOH . K 4 HOH B 32 2035 52 HOH HOH . K 4 HOH B 33 2036 55 HOH HOH . K 4 HOH B 34 2037 57 HOH HOH . K 4 HOH B 35 2038 58 HOH HOH . K 4 HOH B 36 2039 60 HOH HOH . K 4 HOH B 37 2040 62 HOH HOH . K 4 HOH B 38 2041 63 HOH HOH . K 4 HOH B 39 2042 64 HOH HOH . K 4 HOH B 40 2043 68 HOH HOH . K 4 HOH B 41 2044 69 HOH HOH . K 4 HOH B 42 2045 72 HOH HOH . K 4 HOH B 43 2046 77 HOH HOH . K 4 HOH B 44 2047 78 HOH HOH . K 4 HOH B 45 2048 80 HOH HOH . K 4 HOH B 46 2049 81 HOH HOH . K 4 HOH B 47 2050 84 HOH HOH . K 4 HOH B 48 2051 85 HOH HOH . K 4 HOH B 49 2052 89 HOH HOH . K 4 HOH B 50 2053 90 HOH HOH . K 4 HOH B 51 2054 91 HOH HOH . K 4 HOH B 52 2055 93 HOH HOH . K 4 HOH B 53 2056 94 HOH HOH . K 4 HOH B 54 2057 96 HOH HOH . K 4 HOH B 55 2058 98 HOH HOH . K 4 HOH B 56 2059 99 HOH HOH . K 4 HOH B 57 2060 104 HOH HOH . K 4 HOH B 58 2061 108 HOH HOH . K 4 HOH B 59 2062 110 HOH HOH . K 4 HOH B 60 2063 112 HOH HOH . K 4 HOH B 61 2064 113 HOH HOH . K 4 HOH B 62 2065 119 HOH HOH . K 4 HOH B 63 2066 121 HOH HOH . K 4 HOH B 64 2067 123 HOH HOH . K 4 HOH B 65 2068 126 HOH HOH . K 4 HOH B 66 2069 127 HOH HOH . K 4 HOH B 67 2070 128 HOH HOH . K 4 HOH B 68 2071 131 HOH HOH . K 4 HOH B 69 2072 135 HOH HOH . K 4 HOH B 70 2073 136 HOH HOH . K 4 HOH B 71 2074 137 HOH HOH . K 4 HOH B 72 2075 138 HOH HOH . K 4 HOH B 73 2076 139 HOH HOH . K 4 HOH B 74 2077 140 HOH HOH . K 4 HOH B 75 2078 141 HOH HOH . K 4 HOH B 76 2079 145 HOH HOH . K 4 HOH B 77 2080 146 HOH HOH . K 4 HOH B 78 2081 147 HOH HOH . K 4 HOH B 79 2082 148 HOH HOH . K 4 HOH B 80 2083 149 HOH HOH . K 4 HOH B 81 2084 150 HOH HOH . K 4 HOH B 82 2085 152 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 36.964 _atom_site.Cartn_y -9.345 _atom_site.Cartn_z 10.702 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1003 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #