data_1K9Y # _model_server_result.job_id C0j1YaWmFr1e4t_h2M1qEQ _model_server_result.datetime_utc '2024-10-19 10:37:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k9y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 1K9Y # _exptl.entry_id 1K9Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.96 _cell.angle_gamma 90 _cell.entry_id 1K9Y _cell.length_a 54.693 _cell.length_b 45.075 _cell.length_c 71.794 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K9Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 349 A CYS 349 1_555 G S2 BME . A BME 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.833 ? metalc ? metalc1 A OE1 GLU 72 A GLU 72 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc2 A OE2 GLU 72 A GLU 72 1_555 C MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc3 A OD1 ASP 142 A ASP 142 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc4 A OD2 ASP 142 A ASP 142 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc5 A O ILE 144 A ILE 144 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc6 A OD1 ASP 145 A ASP 145 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc7 A OD1 ASP 294 A ASP 294 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc8 B MG MG . A MG 401 1_555 E O2 PO4 . A PO4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc9 B MG MG . A MG 401 1_555 E O3 PO4 . A PO4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc10 B MG MG . A MG 401 1_555 H O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc11 D MG MG . A MG 402 1_555 F O3' AMP . A AMP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc12 D MG MG . A MG 402 1_555 E O3 PO4 . A PO4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc13 D MG MG . A MG 402 1_555 H O HOH . A HOH 588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc14 C MG MG . A MG 403 1_555 E O1 PO4 . A PO4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc15 C MG MG . A MG 403 1_555 E O2 PO4 . A PO4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc16 C MG MG . A MG 403 1_555 H O HOH . A HOH 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc17 C MG MG . A MG 403 1_555 H O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc18 C MG MG . A MG 403 1_555 H O HOH . A HOH 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1K9Y _atom_sites.fract_transf_matrix[1][1] 0.018284 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007003 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022185 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 1 MG MG . C 2 MG A 1 403 3 MG MG . D 2 MG A 1 402 2 MG MG . E 3 PO4 A 1 502 2 PO4 PO4 . F 4 AMP A 1 501 1 AMP AMP . G 5 BME A 1 503 3 BME BME . H 6 HOH A 1 504 1 HOH HOH . H 6 HOH A 2 505 2 HOH HOH . H 6 HOH A 3 506 3 HOH HOH . H 6 HOH A 4 507 4 HOH HOH . H 6 HOH A 5 508 5 HOH HOH . H 6 HOH A 6 509 6 HOH HOH . H 6 HOH A 7 510 7 HOH HOH . H 6 HOH A 8 511 8 HOH HOH . H 6 HOH A 9 512 9 HOH HOH . H 6 HOH A 10 513 10 HOH HOH . H 6 HOH A 11 514 11 HOH HOH . H 6 HOH A 12 515 12 HOH HOH . H 6 HOH A 13 516 13 HOH HOH . H 6 HOH A 14 517 14 HOH HOH . H 6 HOH A 15 518 15 HOH HOH . H 6 HOH A 16 519 16 HOH HOH . H 6 HOH A 17 520 17 HOH HOH . H 6 HOH A 18 521 18 HOH HOH . H 6 HOH A 19 522 19 HOH HOH . H 6 HOH A 20 523 20 HOH HOH . H 6 HOH A 21 524 21 HOH HOH . H 6 HOH A 22 525 22 HOH HOH . H 6 HOH A 23 526 23 HOH HOH . H 6 HOH A 24 527 24 HOH HOH . H 6 HOH A 25 528 25 HOH HOH . H 6 HOH A 26 529 26 HOH HOH . H 6 HOH A 27 530 27 HOH HOH . H 6 HOH A 28 531 28 HOH HOH . H 6 HOH A 29 532 29 HOH HOH . H 6 HOH A 30 533 30 HOH HOH . H 6 HOH A 31 534 31 HOH HOH . H 6 HOH A 32 535 32 HOH HOH . H 6 HOH A 33 536 33 HOH HOH . H 6 HOH A 34 537 34 HOH HOH . H 6 HOH A 35 538 35 HOH HOH . H 6 HOH A 36 539 36 HOH HOH . H 6 HOH A 37 540 37 HOH HOH . H 6 HOH A 38 541 38 HOH HOH . H 6 HOH A 39 542 39 HOH HOH . H 6 HOH A 40 543 40 HOH HOH . H 6 HOH A 41 544 41 HOH HOH . H 6 HOH A 42 545 42 HOH HOH . H 6 HOH A 43 546 43 HOH HOH . H 6 HOH A 44 547 44 HOH HOH . H 6 HOH A 45 548 45 HOH HOH . H 6 HOH A 46 549 46 HOH HOH . H 6 HOH A 47 550 47 HOH HOH . H 6 HOH A 48 551 48 HOH HOH . H 6 HOH A 49 552 49 HOH HOH . H 6 HOH A 50 553 50 HOH HOH . H 6 HOH A 51 554 51 HOH HOH . H 6 HOH A 52 555 52 HOH HOH . H 6 HOH A 53 556 53 HOH HOH . H 6 HOH A 54 557 54 HOH HOH . H 6 HOH A 55 558 55 HOH HOH . H 6 HOH A 56 559 56 HOH HOH . H 6 HOH A 57 560 57 HOH HOH . H 6 HOH A 58 561 58 HOH HOH . H 6 HOH A 59 562 59 HOH HOH . H 6 HOH A 60 563 60 HOH HOH . H 6 HOH A 61 564 61 HOH HOH . H 6 HOH A 62 565 62 HOH HOH . H 6 HOH A 63 566 63 HOH HOH . H 6 HOH A 64 567 64 HOH HOH . H 6 HOH A 65 568 65 HOH HOH . H 6 HOH A 66 569 66 HOH HOH . H 6 HOH A 67 570 67 HOH HOH . H 6 HOH A 68 571 68 HOH HOH . H 6 HOH A 69 572 69 HOH HOH . H 6 HOH A 70 573 70 HOH HOH . H 6 HOH A 71 574 71 HOH HOH . H 6 HOH A 72 575 72 HOH HOH . H 6 HOH A 73 576 73 HOH HOH . H 6 HOH A 74 577 74 HOH HOH . H 6 HOH A 75 578 75 HOH HOH . H 6 HOH A 76 579 76 HOH HOH . H 6 HOH A 77 580 77 HOH HOH . H 6 HOH A 78 581 78 HOH HOH . H 6 HOH A 79 582 79 HOH HOH . H 6 HOH A 80 583 80 HOH HOH . H 6 HOH A 81 584 81 HOH HOH . H 6 HOH A 82 585 82 HOH HOH . H 6 HOH A 83 586 83 HOH HOH . H 6 HOH A 84 587 84 HOH HOH . H 6 HOH A 85 588 85 HOH HOH . H 6 HOH A 86 589 86 HOH HOH . H 6 HOH A 87 590 87 HOH HOH . H 6 HOH A 88 591 88 HOH HOH . H 6 HOH A 89 592 89 HOH HOH . H 6 HOH A 90 593 90 HOH HOH . H 6 HOH A 91 594 91 HOH HOH . H 6 HOH A 92 595 92 HOH HOH . H 6 HOH A 93 596 93 HOH HOH . H 6 HOH A 94 597 94 HOH HOH . H 6 HOH A 95 598 95 HOH HOH . H 6 HOH A 96 599 96 HOH HOH . H 6 HOH A 97 600 97 HOH HOH . H 6 HOH A 98 601 98 HOH HOH . H 6 HOH A 99 602 99 HOH HOH . H 6 HOH A 100 603 100 HOH HOH . H 6 HOH A 101 604 101 HOH HOH . H 6 HOH A 102 605 102 HOH HOH . H 6 HOH A 103 606 103 HOH HOH . H 6 HOH A 104 607 104 HOH HOH . H 6 HOH A 105 608 105 HOH HOH . H 6 HOH A 106 609 106 HOH HOH . H 6 HOH A 107 610 107 HOH HOH . H 6 HOH A 108 611 108 HOH HOH . H 6 HOH A 109 612 109 HOH HOH . H 6 HOH A 110 613 110 HOH HOH . H 6 HOH A 111 614 111 HOH HOH . H 6 HOH A 112 615 112 HOH HOH . H 6 HOH A 113 616 113 HOH HOH . H 6 HOH A 114 617 114 HOH HOH . H 6 HOH A 115 618 115 HOH HOH . H 6 HOH A 116 619 116 HOH HOH . H 6 HOH A 117 620 117 HOH HOH . H 6 HOH A 118 621 118 HOH HOH . H 6 HOH A 119 622 119 HOH HOH . H 6 HOH A 120 623 120 HOH HOH . H 6 HOH A 121 624 121 HOH HOH . H 6 HOH A 122 625 122 HOH HOH . H 6 HOH A 123 626 123 HOH HOH . H 6 HOH A 124 627 124 HOH HOH . H 6 HOH A 125 628 125 HOH HOH . H 6 HOH A 126 629 126 HOH HOH . H 6 HOH A 127 630 127 HOH HOH . H 6 HOH A 128 631 128 HOH HOH . H 6 HOH A 129 632 129 HOH HOH . H 6 HOH A 130 633 130 HOH HOH . H 6 HOH A 131 634 131 HOH HOH . H 6 HOH A 132 635 132 HOH HOH . H 6 HOH A 133 636 133 HOH HOH . H 6 HOH A 134 637 134 HOH HOH . H 6 HOH A 135 638 135 HOH HOH . H 6 HOH A 136 639 136 HOH HOH . H 6 HOH A 137 640 137 HOH HOH . H 6 HOH A 138 641 138 HOH HOH . H 6 HOH A 139 642 139 HOH HOH . H 6 HOH A 140 643 140 HOH HOH . H 6 HOH A 141 644 141 HOH HOH . H 6 HOH A 142 645 142 HOH HOH . H 6 HOH A 143 646 143 HOH HOH . H 6 HOH A 144 647 144 HOH HOH . H 6 HOH A 145 648 145 HOH HOH . H 6 HOH A 146 649 146 HOH HOH . H 6 HOH A 147 650 147 HOH HOH . H 6 HOH A 148 651 148 HOH HOH . H 6 HOH A 149 652 149 HOH HOH . H 6 HOH A 150 653 150 HOH HOH . H 6 HOH A 151 654 151 HOH HOH . H 6 HOH A 152 655 152 HOH HOH . H 6 HOH A 153 656 153 HOH HOH . H 6 HOH A 154 657 154 HOH HOH . H 6 HOH A 155 658 155 HOH HOH . H 6 HOH A 156 659 156 HOH HOH . H 6 HOH A 157 660 157 HOH HOH . H 6 HOH A 158 661 158 HOH HOH . H 6 HOH A 159 662 159 HOH HOH . H 6 HOH A 160 663 160 HOH HOH . H 6 HOH A 161 664 161 HOH HOH . H 6 HOH A 162 665 162 HOH HOH . H 6 HOH A 163 666 163 HOH HOH . H 6 HOH A 164 667 164 HOH HOH . H 6 HOH A 165 668 165 HOH HOH . H 6 HOH A 166 669 166 HOH HOH . H 6 HOH A 167 670 167 HOH HOH . H 6 HOH A 168 671 168 HOH HOH . H 6 HOH A 169 672 169 HOH HOH . H 6 HOH A 170 673 170 HOH HOH . H 6 HOH A 171 674 171 HOH HOH . H 6 HOH A 172 675 172 HOH HOH . H 6 HOH A 173 676 173 HOH HOH . H 6 HOH A 174 677 174 HOH HOH . H 6 HOH A 175 678 175 HOH HOH . H 6 HOH A 176 679 176 HOH HOH . H 6 HOH A 177 680 177 HOH HOH . H 6 HOH A 178 681 178 HOH HOH . H 6 HOH A 179 682 179 HOH HOH . H 6 HOH A 180 683 180 HOH HOH . H 6 HOH A 181 684 181 HOH HOH . H 6 HOH A 182 685 182 HOH HOH . H 6 HOH A 183 686 183 HOH HOH . H 6 HOH A 184 687 184 HOH HOH . H 6 HOH A 185 688 185 HOH HOH . H 6 HOH A 186 689 186 HOH HOH . H 6 HOH A 187 690 187 HOH HOH . H 6 HOH A 188 691 188 HOH HOH . H 6 HOH A 189 692 189 HOH HOH . H 6 HOH A 190 693 190 HOH HOH . H 6 HOH A 191 694 191 HOH HOH . H 6 HOH A 192 695 194 HOH HOH . H 6 HOH A 193 696 195 HOH HOH . H 6 HOH A 194 697 196 HOH HOH . H 6 HOH A 195 698 197 HOH HOH . H 6 HOH A 196 699 198 HOH HOH . H 6 HOH A 197 700 199 HOH HOH . H 6 HOH A 198 701 200 HOH HOH . H 6 HOH A 199 702 201 HOH HOH . H 6 HOH A 200 703 202 HOH HOH . H 6 HOH A 201 704 203 HOH HOH . H 6 HOH A 202 705 204 HOH HOH . H 6 HOH A 203 706 205 HOH HOH . H 6 HOH A 204 707 207 HOH HOH . H 6 HOH A 205 708 208 HOH HOH . H 6 HOH A 206 709 209 HOH HOH . H 6 HOH A 207 710 210 HOH HOH . H 6 HOH A 208 711 211 HOH HOH . H 6 HOH A 209 712 212 HOH HOH . H 6 HOH A 210 713 213 HOH HOH . H 6 HOH A 211 714 214 HOH HOH . H 6 HOH A 212 715 215 HOH HOH . H 6 HOH A 213 716 217 HOH HOH . H 6 HOH A 214 717 218 HOH HOH . H 6 HOH A 215 718 219 HOH HOH . H 6 HOH A 216 719 220 HOH HOH . H 6 HOH A 217 720 221 HOH HOH . H 6 HOH A 218 721 222 HOH HOH . H 6 HOH A 219 722 223 HOH HOH . H 6 HOH A 220 723 224 HOH HOH . H 6 HOH A 221 724 225 HOH HOH . H 6 HOH A 222 725 226 HOH HOH . H 6 HOH A 223 726 227 HOH HOH . H 6 HOH A 224 727 228 HOH HOH . H 6 HOH A 225 728 229 HOH HOH . H 6 HOH A 226 729 230 HOH HOH . H 6 HOH A 227 730 231 HOH HOH . H 6 HOH A 228 731 232 HOH HOH . H 6 HOH A 229 732 233 HOH HOH . H 6 HOH A 230 733 234 HOH HOH . H 6 HOH A 231 734 235 HOH HOH . H 6 HOH A 232 735 236 HOH HOH . H 6 HOH A 233 736 237 HOH HOH . H 6 HOH A 234 737 238 HOH HOH . H 6 HOH A 235 738 239 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 6.945 _atom_site.Cartn_y 15.777 _atom_site.Cartn_z -23.423 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #