data_1KAH # _model_server_result.job_id FnKh0bVnA0Dns5T82JjMBw _model_server_result.datetime_utc '2024-12-26 15:31:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 1KAH # _exptl.entry_id 1KAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.162 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HISTIDINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KAH _cell.length_a 55.26 _cell.length_b 109.09 _cell.length_c 157.94 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 21 A LEU 21 1_555 A N MSE 22 A MSE 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 22 A MSE 22 1_555 A N ARG 23 A ARG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C ALA 87 A ALA 87 1_555 A N MSE 88 A MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 88 A MSE 88 1_555 A N ALA 89 A ALA 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C LEU 143 A LEU 143 1_555 A N MSE 144 A MSE 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 144 A MSE 144 1_555 A N LEU 145 A LEU 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C ASP 231 A ASP 231 1_555 A N MSE 232 A MSE 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C MSE 232 A MSE 232 1_555 A N PRO 233 A PRO 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale9 A C ASP 276 A ASP 276 1_555 A N MSE 277 A MSE 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C MSE 277 A MSE 277 1_555 A N ALA 278 A ALA 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 A C ARG 389 A ARG 389 1_555 A N MSE 390 A MSE 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 A C MSE 390 A MSE 390 1_555 A N THR 391 A THR 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 B C MSE 1 B MSE 1 1_555 B N SER 2 B SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 B C LEU 21 B LEU 21 1_555 B N MSE 22 B MSE 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 B C MSE 22 B MSE 22 1_555 B N ARG 23 B ARG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 B C ALA 87 B ALA 87 1_555 B N MSE 88 B MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale17 B C MSE 88 B MSE 88 1_555 B N ALA 89 B ALA 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale18 B C LEU 143 B LEU 143 1_555 B N MSE 144 B MSE 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 B C MSE 144 B MSE 144 1_555 B N LEU 145 B LEU 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale20 B C ASP 231 B ASP 231 1_555 B N MSE 232 B MSE 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale21 B C MSE 232 B MSE 232 1_555 B N PRO 233 B PRO 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale22 B C ASP 276 B ASP 276 1_555 B N MSE 277 B MSE 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale23 B C MSE 277 B MSE 277 1_555 B N ALA 278 B ALA 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale24 B C ARG 389 B ARG 389 1_555 B N MSE 390 B MSE 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale25 B C MSE 390 B MSE 390 1_555 B N THR 391 B THR 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A NE2 HIS 262 A HIS 262 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc2 A OD2 ASP 360 A ASP 360 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc3 A NE2 HIS 419 A HIS 419 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc4 C ZN ZN . A ZN 501 1_555 D N HIS . A HIS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc5 C ZN ZN . A ZN 501 1_555 D ND1 HIS . A HIS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc6 C ZN ZN . A ZN 501 1_555 B NE2 HIS 419 B HIS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc7 E ND1 HIS . A HIS 503 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc8 B NE2 HIS 262 B HIS 262 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc9 B OD2 ASP 360 B ASP 360 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? # _chem_comp.formula 'C6 H10 N3 O2 1' _chem_comp.formula_weight 156.162 _chem_comp.id HIS _chem_comp.mon_nstd_flag y _chem_comp.name HISTIDINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA HIS sing 129 n n N H HIS sing 130 n n N H2 HIS sing 131 n n CA C HIS sing 132 n n CA CB HIS sing 133 n n CA HA HIS sing 134 n n C O HIS doub 135 n n C OXT HIS sing 136 n n CB CG HIS sing 137 n n CB HB2 HIS sing 138 n n CB HB3 HIS sing 139 n n CG ND1 HIS sing 140 n y CG CD2 HIS doub 141 n y ND1 CE1 HIS doub 142 n y ND1 HD1 HIS sing 143 n n CD2 NE2 HIS sing 144 n y CD2 HD2 HIS sing 145 n n CE1 NE2 HIS sing 146 n y CE1 HE1 HIS sing 147 n n NE2 HE2 HIS sing 148 n n OXT HXT HIS sing 149 n n # _atom_sites.entry_id 1KAH _atom_sites.fract_transf_matrix[1][1] 0.018096 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 501 501 ZN ZN . D 3 HIS A 1 502 101 HIS HIS . E 3 HIS A 1 503 102 HIS HIS . F 2 ZN B 1 502 502 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N HIS . . . D 3 13.792 114.916 65.941 1 63.86 ? N HIS 502 A 1 HETATM 2 C CA HIS . . . D 3 14.671 113.938 65.231 1 64.03 ? CA HIS 502 A 1 HETATM 3 C C HIS . . . D 3 14.802 114.287 63.738 1 64.42 ? C HIS 502 A 1 HETATM 4 O O HIS . . . D 3 13.759 114.317 63.047 1 64.1 ? O HIS 502 A 1 HETATM 5 C CB HIS . . . D 3 14.104 112.515 65.382 1 62.98 ? CB HIS 502 A 1 HETATM 6 C CG HIS . . . D 3 14.066 112.011 66.794 1 62.55 ? CG HIS 502 A 1 HETATM 7 N ND1 HIS . . . D 3 13.483 112.715 67.826 1 61.33 ? ND1 HIS 502 A 1 HETATM 8 C CD2 HIS . . . D 3 14.523 110.857 67.337 1 61.8 ? CD2 HIS 502 A 1 HETATM 9 C CE1 HIS . . . D 3 13.584 112.016 68.943 1 61.46 ? CE1 HIS 502 A 1 HETATM 10 N NE2 HIS . . . D 3 14.211 110.885 68.675 1 61.39 ? NE2 HIS 502 A 1 HETATM 11 O OXT HIS . . . D 3 15.941 114.52 63.272 1 64.04 ? OXT HIS 502 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #