data_1KAK # _model_server_result.job_id -eXlH9ddtZwUHrWd_kF3TA _model_server_result.datetime_utc '2025-03-05 02:41:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 1KAK # _exptl.entry_id 1KAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 388.145 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{[7-(DIFLUORO-PHOSPHONO-METHYL)-NAPHTHALEN-2-YL]-DIFLUORO-METHYL}-PHOSPHONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1KAK _cell.length_a 87.516 _cell.length_b 87.516 _cell.length_c 106.287 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H10 F4 O6 P2' _chem_comp.formula_weight 388.145 _chem_comp.id FNP _chem_comp.mon_nstd_flag . _chem_comp.name '{[7-(DIFLUORO-PHOSPHONO-METHYL)-NAPHTHALEN-2-YL]-DIFLUORO-METHYL}-PHOSPHONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C8 FNP sing 83 n n C1 F1 FNP sing 84 n n C1 F2 FNP sing 85 n n C1 P1 FNP sing 86 n n C2 C3 FNP doub 87 n y C2 C11 FNP sing 88 n y C2 C12 FNP sing 89 n n C3 C4 FNP sing 90 n y C3 HC3 FNP sing 91 n n C4 C5 FNP doub 92 n y C4 HC4 FNP sing 93 n n C5 C6 FNP sing 94 n y C5 C10 FNP sing 95 n y C6 C7 FNP doub 96 n y C6 HC6 FNP sing 97 n n C7 C8 FNP sing 98 n y C7 HC7 FNP sing 99 n n C8 C9 FNP doub 100 n y C9 C10 FNP sing 101 n y C9 HC9 FNP sing 102 n n C10 C11 FNP doub 103 n y C11 H11 FNP sing 104 n n C12 F3 FNP sing 105 n n C12 F4 FNP sing 106 n n C12 P2 FNP sing 107 n n P1 OP1 FNP doub 108 n n P1 OP2 FNP sing 109 n n P1 OP3 FNP sing 110 n n OP2 HO2 FNP sing 111 n n OP3 HO3 FNP sing 112 n n P2 OP4 FNP doub 113 n n P2 OP5 FNP sing 114 n n P2 OP6 FNP sing 115 n n OP5 HO5 FNP sing 116 n n OP6 HO6 FNP sing 117 n n # _atom_sites.entry_id 1KAK _atom_sites.fract_transf_matrix[1][1] 0.011426 _atom_sites.fract_transf_matrix[1][2] 0.006597 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013194 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009408 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FNP A 1 301 301 FNP FNP . C 3 HOH A 1 400 400 HOH HOH . C 3 HOH A 2 401 401 HOH HOH . C 3 HOH A 3 402 402 HOH HOH . C 3 HOH A 4 403 403 HOH HOH . C 3 HOH A 5 404 404 HOH HOH . C 3 HOH A 6 405 405 HOH HOH . C 3 HOH A 7 406 406 HOH HOH . C 3 HOH A 8 407 407 HOH HOH . C 3 HOH A 9 408 408 HOH HOH . C 3 HOH A 10 409 409 HOH HOH . C 3 HOH A 11 410 410 HOH HOH . C 3 HOH A 12 411 411 HOH HOH . C 3 HOH A 13 412 412 HOH HOH . C 3 HOH A 14 413 413 HOH HOH . C 3 HOH A 15 414 414 HOH HOH . C 3 HOH A 16 415 415 HOH HOH . C 3 HOH A 17 416 416 HOH HOH . C 3 HOH A 18 417 417 HOH HOH . C 3 HOH A 19 418 418 HOH HOH . C 3 HOH A 20 419 419 HOH HOH . C 3 HOH A 21 420 420 HOH HOH . C 3 HOH A 22 421 421 HOH HOH . C 3 HOH A 23 422 422 HOH HOH . C 3 HOH A 24 423 423 HOH HOH . C 3 HOH A 25 424 424 HOH HOH . C 3 HOH A 26 425 425 HOH HOH . C 3 HOH A 27 426 426 HOH HOH . C 3 HOH A 28 427 427 HOH HOH . C 3 HOH A 29 428 428 HOH HOH . C 3 HOH A 30 429 429 HOH HOH . C 3 HOH A 31 430 430 HOH HOH . C 3 HOH A 32 431 431 HOH HOH . C 3 HOH A 33 432 432 HOH HOH . C 3 HOH A 34 433 433 HOH HOH . C 3 HOH A 35 434 434 HOH HOH . C 3 HOH A 36 435 435 HOH HOH . C 3 HOH A 37 436 436 HOH HOH . C 3 HOH A 38 437 437 HOH HOH . C 3 HOH A 39 438 438 HOH HOH . C 3 HOH A 40 439 439 HOH HOH . C 3 HOH A 41 440 440 HOH HOH . C 3 HOH A 42 441 441 HOH HOH . C 3 HOH A 43 442 442 HOH HOH . C 3 HOH A 44 443 443 HOH HOH . C 3 HOH A 45 444 444 HOH HOH . C 3 HOH A 46 445 445 HOH HOH . C 3 HOH A 47 446 446 HOH HOH . C 3 HOH A 48 447 447 HOH HOH . C 3 HOH A 49 448 448 HOH HOH . C 3 HOH A 50 449 449 HOH HOH . C 3 HOH A 51 450 450 HOH HOH . C 3 HOH A 52 451 451 HOH HOH . C 3 HOH A 53 452 452 HOH HOH . C 3 HOH A 54 453 453 HOH HOH . C 3 HOH A 55 454 454 HOH HOH . C 3 HOH A 56 455 455 HOH HOH . C 3 HOH A 57 456 456 HOH HOH . C 3 HOH A 58 457 457 HOH HOH . C 3 HOH A 59 458 458 HOH HOH . C 3 HOH A 60 459 459 HOH HOH . C 3 HOH A 61 460 460 HOH HOH . C 3 HOH A 62 461 461 HOH HOH . C 3 HOH A 63 462 462 HOH HOH . C 3 HOH A 64 463 463 HOH HOH . C 3 HOH A 65 464 464 HOH HOH . C 3 HOH A 66 465 465 HOH HOH . C 3 HOH A 67 466 466 HOH HOH . C 3 HOH A 68 467 467 HOH HOH . C 3 HOH A 69 468 468 HOH HOH . C 3 HOH A 70 469 469 HOH HOH . C 3 HOH A 71 470 470 HOH HOH . C 3 HOH A 72 471 471 HOH HOH . C 3 HOH A 73 472 472 HOH HOH . C 3 HOH A 74 473 473 HOH HOH . C 3 HOH A 75 474 474 HOH HOH . C 3 HOH A 76 475 475 HOH HOH . C 3 HOH A 77 476 476 HOH HOH . C 3 HOH A 78 477 477 HOH HOH . C 3 HOH A 79 478 478 HOH HOH . C 3 HOH A 80 479 479 HOH HOH . C 3 HOH A 81 480 480 HOH HOH . C 3 HOH A 82 481 481 HOH HOH . C 3 HOH A 83 482 482 HOH HOH . C 3 HOH A 84 483 483 HOH HOH . C 3 HOH A 85 484 484 HOH HOH . C 3 HOH A 86 485 485 HOH HOH . C 3 HOH A 87 486 486 HOH HOH . C 3 HOH A 88 487 487 HOH HOH . C 3 HOH A 89 488 488 HOH HOH . C 3 HOH A 90 489 489 HOH HOH . C 3 HOH A 91 490 490 HOH HOH . C 3 HOH A 92 491 491 HOH HOH . C 3 HOH A 93 492 492 HOH HOH . C 3 HOH A 94 493 493 HOH HOH . C 3 HOH A 95 494 494 HOH HOH . C 3 HOH A 96 495 495 HOH HOH . C 3 HOH A 97 496 496 HOH HOH . C 3 HOH A 98 497 497 HOH HOH . C 3 HOH A 99 498 498 HOH HOH . C 3 HOH A 100 499 499 HOH HOH . C 3 HOH A 101 500 500 HOH HOH . C 3 HOH A 102 501 501 HOH HOH . C 3 HOH A 103 502 502 HOH HOH . C 3 HOH A 104 503 503 HOH HOH . C 3 HOH A 105 504 504 HOH HOH . C 3 HOH A 106 505 505 HOH HOH . C 3 HOH A 107 506 506 HOH HOH . C 3 HOH A 108 507 507 HOH HOH . C 3 HOH A 109 508 508 HOH HOH . C 3 HOH A 110 509 509 HOH HOH . C 3 HOH A 111 510 510 HOH HOH . C 3 HOH A 112 511 511 HOH HOH . C 3 HOH A 113 512 512 HOH HOH . C 3 HOH A 114 513 513 HOH HOH . C 3 HOH A 115 514 514 HOH HOH . C 3 HOH A 116 515 515 HOH HOH . C 3 HOH A 117 516 516 HOH HOH . C 3 HOH A 118 517 517 HOH HOH . C 3 HOH A 119 518 518 HOH HOH . C 3 HOH A 120 519 519 HOH HOH . C 3 HOH A 121 520 520 HOH HOH . C 3 HOH A 122 521 521 HOH HOH . C 3 HOH A 123 522 522 HOH HOH . C 3 HOH A 124 523 523 HOH HOH . C 3 HOH A 125 524 524 HOH HOH . C 3 HOH A 126 525 525 HOH HOH . C 3 HOH A 127 526 526 HOH HOH . C 3 HOH A 128 527 527 HOH HOH . C 3 HOH A 129 528 528 HOH HOH . C 3 HOH A 130 529 529 HOH HOH . C 3 HOH A 131 530 530 HOH HOH . C 3 HOH A 132 531 531 HOH HOH . C 3 HOH A 133 532 532 HOH HOH . C 3 HOH A 134 533 533 HOH HOH . C 3 HOH A 135 534 534 HOH HOH . C 3 HOH A 136 535 535 HOH HOH . C 3 HOH A 137 536 536 HOH HOH . C 3 HOH A 138 537 537 HOH HOH . C 3 HOH A 139 538 538 HOH HOH . C 3 HOH A 140 539 539 HOH HOH . C 3 HOH A 141 540 540 HOH HOH . C 3 HOH A 142 541 541 HOH HOH . C 3 HOH A 143 542 542 HOH HOH . C 3 HOH A 144 543 543 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FNP . . . B 2 24.39 19.753 2.617 1 44.35 ? C1 FNP 301 A 1 HETATM 2 C C2 FNP . . . B 2 25.665 24.469 -0.901 1 46.18 ? C2 FNP 301 A 1 HETATM 3 C C3 FNP . . . B 2 24.995 25.362 -0.079 1 45.78 ? C3 FNP 301 A 1 HETATM 4 C C4 FNP . . . B 2 24.277 24.953 1.029 1 46.76 ? C4 FNP 301 A 1 HETATM 5 C C5 FNP . . . B 2 24.21 23.591 1.359 1 44.76 ? C5 FNP 301 A 1 HETATM 6 C C6 FNP . . . B 2 23.486 23.155 2.48 1 45.1 ? C6 FNP 301 A 1 HETATM 7 C C7 FNP . . . B 2 23.431 21.819 2.79 1 40.66 ? C7 FNP 301 A 1 HETATM 8 C C8 FNP . . . B 2 24.07 20.885 2.033 1 43.25 ? C8 FNP 301 A 1 HETATM 9 C C9 FNP . . . B 2 24.809 21.285 0.89 1 42.55 ? C9 FNP 301 A 1 HETATM 10 C C10 FNP . . . B 2 24.881 22.645 0.548 1 42.79 ? C10 FNP 301 A 1 HETATM 11 C C11 FNP . . . B 2 25.6 23.098 -0.575 1 44.68 ? C11 FNP 301 A 1 HETATM 12 C C12 FNP . . . B 2 26.035 24.882 -2.103 1 47.63 ? C12 FNP 301 A 1 HETATM 13 F F1 FNP . . . B 2 24.448 18.647 1.653 1 50.37 ? F1 FNP 301 A 1 HETATM 14 F F2 FNP . . . B 2 25.539 19.851 3.222 1 49.42 ? F2 FNP 301 A 1 HETATM 15 P P1 FNP . . . B 2 23.169 18.777 3.641 1 44.69 ? P1 FNP 301 A 1 HETATM 16 O OP1 FNP . . . B 2 21.96 19.573 3.928 1 39.8 ? OP1 FNP 301 A 1 HETATM 17 O OP2 FNP . . . B 2 23.782 18.372 4.938 1 36.98 ? OP2 FNP 301 A 1 HETATM 18 O OP3 FNP . . . B 2 22.735 17.533 2.941 1 41.94 ? OP3 FNP 301 A 1 HETATM 19 F F3 FNP . . . B 2 25.057 25.829 -2.691 1 48.34 ? F3 FNP 301 A 1 HETATM 20 F F4 FNP . . . B 2 26.218 23.889 -2.931 1 48.68 ? F4 FNP 301 A 1 HETATM 21 P P2 FNP . . . B 2 27.309 26.206 -2.326 1 48.4 ? P2 FNP 301 A 1 HETATM 22 O OP4 FNP . . . B 2 27.081 27.311 -1.359 1 46.6 ? OP4 FNP 301 A 1 HETATM 23 O OP5 FNP . . . B 2 27.246 26.778 -3.694 1 48.03 ? OP5 FNP 301 A 1 HETATM 24 O OP6 FNP . . . B 2 28.676 25.662 -2.121 1 44.37 ? OP6 FNP 301 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #