data_1KAQ
#
_model_server_result.job_id            pxdfuHGOMUMZ5k-IyjJjrA 
_model_server_result.datetime_utc      '2024-11-23 21:42:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1kaq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":190}' 
#
_entry.id    1KAQ 
#
_exptl.entry_id    1KAQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.418 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICOTINIC ACID ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1KAQ 
_cell.length_a            78.31 
_cell.length_b            108.784 
_cell.length_c            177.562 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KAQ 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,G,J 1 1 
B,C,H,I 2 1 
E,F,K,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C21 H27 N6 O15 P2 1' 
_chem_comp.formula_weight    665.418 
_chem_comp.id                DND 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICOTINIC ACID ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DEAMIDO-NAD+ 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O13 PA DND doub 70 n n 
O14 PA DND sing 71 n n 
PA O3P DND sing 72 n n 
PA O5B DND sing 73 n n 
O11 PN DND doub 74 n n 
O3P PN DND sing 75 n n 
O5B C5B DND sing 76 n n 
PN O12 DND sing 77 n n 
PN O5D DND sing 78 n n 
C5B C4B DND sing 79 n n 
N7A C8A DND doub 80 n y 
N7A C5A DND sing 81 n y 
C8A N9A DND sing 82 n y 
N6A C6A DND sing 83 n n 
O5D C5D DND sing 84 n n 
C5A C6A DND sing 85 n y 
C5A C4A DND doub 86 n y 
O4B C4B DND sing 87 n n 
O4B C1B DND sing 88 n n 
C6A N1A DND doub 89 n y 
C4B C3B DND sing 90 n n 
N9A C4A DND sing 91 n y 
N9A C1B DND sing 92 n n 
C5D C4D DND sing 93 n n 
C3D O3D DND sing 94 n n 
C3D C4D DND sing 95 n n 
C3D C2D DND sing 96 n n 
C4A N3A DND sing 97 n y 
C1B C2B DND sing 98 n n 
N1A C2A DND sing 99 n y 
C4D O4D DND sing 100 n n 
C2B C3B DND sing 101 n n 
C2B O2B DND sing 102 n n 
C2D O2D DND sing 103 n n 
C2D C1D DND sing 104 n n 
C3B O3B DND sing 105 n n 
N3A C2A DND doub 106 n y 
O4D C1D DND sing 107 n n 
C1D N1N DND sing 108 n n 
C6N N1N DND doub 109 n y 
C6N C5N DND sing 110 n y 
N1N C2N DND sing 111 n y 
C5N C4N DND doub 112 n y 
C2N C3N DND doub 113 n y 
C4N C3N DND sing 114 n y 
C3N C7N DND sing 115 n n 
C7N O7N DND doub 116 n n 
C7N O8N DND sing 117 n n 
O12 H1 DND sing 118 n n 
C5D H2 DND sing 119 n n 
C5D H3 DND sing 120 n n 
C4D H4 DND sing 121 n n 
C3D H5 DND sing 122 n n 
O3D H6 DND sing 123 n n 
C2D H7 DND sing 124 n n 
O2D H8 DND sing 125 n n 
C1D H9 DND sing 126 n n 
C6N H10 DND sing 127 n n 
C5N H11 DND sing 128 n n 
C4N H12 DND sing 129 n n 
C2N H13 DND sing 130 n n 
O8N H14 DND sing 131 n n 
O14 H15 DND sing 132 n n 
C5B H16 DND sing 133 n n 
C5B H17 DND sing 134 n n 
C4B H18 DND sing 135 n n 
C3B H19 DND sing 136 n n 
O3B H20 DND sing 137 n n 
C2B H21 DND sing 138 n n 
O2B H22 DND sing 139 n n 
C1B H23 DND sing 140 n n 
C2A H24 DND sing 141 n n 
C8A H25 DND sing 142 n n 
N6A H26 DND sing 143 n n 
N6A H27 DND sing 144 n n 
#
_atom_sites.entry_id                     1KAQ 
_atom_sites.fract_transf_matrix[1][1]    0.01277 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009193 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005632 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 DND A 1 601 601 DND DND . 
H 2 DND B 1 501 501 DND DND . 
I 2 DND C 1 401 401 DND DND . 
J 2 DND D 1 301 301 DND DND . 
K 2 DND E 1 201 201 DND DND . 
L 2 DND F 1 190 101 DND DND . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PN DND . . . L 2 73.908 -13.625 131.329 1 131.86 ? PN DND 190 F 1 
HETATM 2 O O11 DND . . . L 2 74.587 -12.939 132.465 1 131.99 ? O11 DND 190 F 1 
HETATM 3 O O12 DND . . . L 2 74.461 -13.087 129.954 1 131.77 ? O12 DND 190 F 1 
HETATM 4 O O3P DND . . . L 2 72.378 -13.451 131.373 1 134.28 ? O3P DND 190 F 1 
HETATM 5 O O5D DND . . . L 2 74.226 -15.174 131.342 1 131.2 ? O5D DND 190 F 1 
HETATM 6 C C5D DND . . . L 2 73.117 -16.099 131.48 1 130.36 ? C5D DND 190 F 1 
HETATM 7 C C4D DND . . . L 2 73.322 -17.044 132.668 1 128.82 ? C4D DND 190 F 1 
HETATM 8 O O4D DND . . . L 2 74.134 -18.104 132.222 1 128.57 ? O4D DND 190 F 1 
HETATM 9 C C3D DND . . . L 2 74.021 -16.386 133.861 1 129.05 ? C3D DND 190 F 1 
HETATM 10 O O3D DND . . . L 2 73.167 -16.127 134.96 1 128.48 ? O3D DND 190 F 1 
HETATM 11 C C2D DND . . . L 2 75.071 -17.399 134.292 1 128.74 ? C2D DND 190 F 1 
HETATM 12 O O2D DND . . . L 2 74.585 -18.105 135.418 1 127.9 ? O2D DND 190 F 1 
HETATM 13 C C1D DND . . . L 2 75.186 -18.377 133.111 1 129.15 ? C1D DND 190 F 1 
HETATM 14 N N1N DND . . . L 2 76.414 -18.305 132.262 1 132.73 ? N1N DND 190 F 1 
HETATM 15 C C6N DND . . . L 2 76.612 -17.371 131.247 1 133.62 ? C6N DND 190 F 1 
HETATM 16 C C5N DND . . . L 2 77.78 -17.333 130.462 1 134.71 ? C5N DND 190 F 1 
HETATM 17 C C4N DND . . . L 2 78.793 -18.287 130.725 1 136.12 ? C4N DND 190 F 1 
HETATM 18 C C3N DND . . . L 2 78.612 -19.245 131.758 1 137.35 ? C3N DND 190 F 1 
HETATM 19 C C2N DND . . . L 2 77.414 -19.208 132.489 1 135.4 ? C2N DND 190 F 1 
HETATM 20 C C7N DND . . . L 2 79.639 -20.25 132.069 1 139.11 ? C7N DND 190 F 1 
HETATM 21 O O7N DND . . . L 2 79.188 -21.44 132.532 1 140.76 ? O7N DND 190 F 1 
HETATM 22 O O8N DND . . . L 2 80.788 -20.011 131.93 1 142.32 ? O8N DND 190 F 1 
HETATM 23 P PA DND . . . L 2 71.407 -12.283 131.583 1 136.79 ? PA DND 190 F 1 
HETATM 24 O O13 DND . . . L 2 71.981 -11.211 132.453 1 136.27 ? O13 DND 190 F 1 
HETATM 25 O O14 DND . . . L 2 70.998 -11.748 130.155 1 137.99 ? O14 DND 190 F 1 
HETATM 26 O O5B DND . . . L 2 70.086 -12.886 132.21 1 138.59 ? O5B DND 190 F 1 
HETATM 27 C C5B DND . . . L 2 69.816 -14.303 132.097 1 141.23 ? C5B DND 190 F 1 
HETATM 28 C C4B DND . . . L 2 68.389 -14.616 131.545 1 140.4 ? C4B DND 190 F 1 
HETATM 29 O O4B DND . . . L 2 67.755 -13.452 131.055 1 141.28 ? O4B DND 190 F 1 
HETATM 30 C C3B DND . . . L 2 68.385 -15.599 130.344 1 140.49 ? C3B DND 190 F 1 
HETATM 31 O O3B DND . . . L 2 69.676 -16.115 130.022 1 138.65 ? O3B DND 190 F 1 
HETATM 32 C C2B DND . . . L 2 67.938 -14.736 129.154 1 140.09 ? C2B DND 190 F 1 
HETATM 33 O O2B DND . . . L 2 68.796 -14.967 128.06 1 140.84 ? O2B DND 190 F 1 
HETATM 34 C C1B DND . . . L 2 68.022 -13.295 129.678 1 141.94 ? C1B DND 190 F 1 
HETATM 35 N N9A DND . . . L 2 67.154 -12.241 129.044 1 143.95 ? N9A DND 190 F 1 
HETATM 36 C C4A DND . . . L 2 66.097 -12.411 128.123 1 143.87 ? C4A DND 190 F 1 
HETATM 37 N N3A DND . . . L 2 65.571 -13.538 127.545 1 145.79 ? N3A DND 190 F 1 
HETATM 38 C C2A DND . . . L 2 64.531 -13.365 126.676 1 146.15 ? C2A DND 190 F 1 
HETATM 39 N N1A DND . . . L 2 63.984 -12.16 126.372 1 146.83 ? N1A DND 190 F 1 
HETATM 40 C C6A DND . . . L 2 64.508 -11.065 126.979 1 145.9 ? C6A DND 190 F 1 
HETATM 41 C C5A DND . . . L 2 65.583 -11.111 127.834 1 144.65 ? C5A DND 190 F 1 
HETATM 42 N N7A DND . . . L 2 66.325 -10.171 128.513 1 143.8 ? N7A DND 190 F 1 
HETATM 43 C C8A DND . . . L 2 67.244 -10.886 129.194 1 143.62 ? C8A DND 190 F 1 
HETATM 44 N N6A DND . . . L 2 63.912 -9.901 126.719 1 146.1 ? N6A DND 190 F 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#