data_1KAQ
#
_model_server_result.job_id            q240fa6oXhVq3stIpIBUTA 
_model_server_result.datetime_utc      '2024-11-27 15:12:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1kaq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":501}' 
#
_entry.id    1KAQ 
#
_exptl.entry_id    1KAQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.418 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICOTINIC ACID ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1KAQ 
_cell.length_a            78.31 
_cell.length_b            108.784 
_cell.length_c            177.562 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KAQ 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,G,J 1 1 
B,C,H,I 2 1 
E,F,K,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C21 H27 N6 O15 P2 1' 
_chem_comp.formula_weight    665.418 
_chem_comp.id                DND 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICOTINIC ACID ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DEAMIDO-NAD+ 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O13 PA DND doub 70 n n 
O14 PA DND sing 71 n n 
PA O3P DND sing 72 n n 
PA O5B DND sing 73 n n 
O11 PN DND doub 74 n n 
O3P PN DND sing 75 n n 
O5B C5B DND sing 76 n n 
PN O12 DND sing 77 n n 
PN O5D DND sing 78 n n 
C5B C4B DND sing 79 n n 
N7A C8A DND doub 80 n y 
N7A C5A DND sing 81 n y 
C8A N9A DND sing 82 n y 
N6A C6A DND sing 83 n n 
O5D C5D DND sing 84 n n 
C5A C6A DND sing 85 n y 
C5A C4A DND doub 86 n y 
O4B C4B DND sing 87 n n 
O4B C1B DND sing 88 n n 
C6A N1A DND doub 89 n y 
C4B C3B DND sing 90 n n 
N9A C4A DND sing 91 n y 
N9A C1B DND sing 92 n n 
C5D C4D DND sing 93 n n 
C3D O3D DND sing 94 n n 
C3D C4D DND sing 95 n n 
C3D C2D DND sing 96 n n 
C4A N3A DND sing 97 n y 
C1B C2B DND sing 98 n n 
N1A C2A DND sing 99 n y 
C4D O4D DND sing 100 n n 
C2B C3B DND sing 101 n n 
C2B O2B DND sing 102 n n 
C2D O2D DND sing 103 n n 
C2D C1D DND sing 104 n n 
C3B O3B DND sing 105 n n 
N3A C2A DND doub 106 n y 
O4D C1D DND sing 107 n n 
C1D N1N DND sing 108 n n 
C6N N1N DND doub 109 n y 
C6N C5N DND sing 110 n y 
N1N C2N DND sing 111 n y 
C5N C4N DND doub 112 n y 
C2N C3N DND doub 113 n y 
C4N C3N DND sing 114 n y 
C3N C7N DND sing 115 n n 
C7N O7N DND doub 116 n n 
C7N O8N DND sing 117 n n 
O12 H1 DND sing 118 n n 
C5D H2 DND sing 119 n n 
C5D H3 DND sing 120 n n 
C4D H4 DND sing 121 n n 
C3D H5 DND sing 122 n n 
O3D H6 DND sing 123 n n 
C2D H7 DND sing 124 n n 
O2D H8 DND sing 125 n n 
C1D H9 DND sing 126 n n 
C6N H10 DND sing 127 n n 
C5N H11 DND sing 128 n n 
C4N H12 DND sing 129 n n 
C2N H13 DND sing 130 n n 
O8N H14 DND sing 131 n n 
O14 H15 DND sing 132 n n 
C5B H16 DND sing 133 n n 
C5B H17 DND sing 134 n n 
C4B H18 DND sing 135 n n 
C3B H19 DND sing 136 n n 
O3B H20 DND sing 137 n n 
C2B H21 DND sing 138 n n 
O2B H22 DND sing 139 n n 
C1B H23 DND sing 140 n n 
C2A H24 DND sing 141 n n 
C8A H25 DND sing 142 n n 
N6A H26 DND sing 143 n n 
N6A H27 DND sing 144 n n 
#
_atom_sites.entry_id                     1KAQ 
_atom_sites.fract_transf_matrix[1][1]    0.01277 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009193 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005632 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 DND A 1 601 601 DND DND . 
H 2 DND B 1 501 501 DND DND . 
I 2 DND C 1 401 401 DND DND . 
J 2 DND D 1 301 301 DND DND . 
K 2 DND E 1 201 201 DND DND . 
L 2 DND F 1 190 101 DND DND . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PN DND . . . H 2 62.444 52.194 93.847 1 23.43 ? PN DND 501 B 1 
HETATM 2 O O11 DND . . . H 2 63.836 51.938 94.281 1 29.62 ? O11 DND 501 B 1 
HETATM 3 O O12 DND . . . H 2 62.293 51.758 92.341 1 30.09 ? O12 DND 501 B 1 
HETATM 4 O O3P DND . . . H 2 62.091 53.688 94.026 1 33.25 ? O3P DND 501 B 1 
HETATM 5 O O5D DND . . . H 2 61.425 51.291 94.665 1 24.18 ? O5D DND 501 B 1 
HETATM 6 C C5D DND . . . H 2 60.282 51.88 95.323 1 27.94 ? C5D DND 501 B 1 
HETATM 7 C C4D DND . . . H 2 60.17 51.412 96.789 1 26.56 ? C4D DND 501 B 1 
HETATM 8 O O4D DND . . . H 2 59.447 50.178 96.888 1 21.26 ? O4D DND 501 B 1 
HETATM 9 C C3D DND . . . H 2 61.504 51.163 97.466 1 23.41 ? C3D DND 501 B 1 
HETATM 10 O O3D DND . . . H 2 62.009 52.296 98.107 1 31.92 ? O3D DND 501 B 1 
HETATM 11 C C2D DND . . . H 2 61.199 50.102 98.518 1 22.9 ? C2D DND 501 B 1 
HETATM 12 O O2D DND . . . H 2 60.809 50.736 99.729 1 21.27 ? O2D DND 501 B 1 
HETATM 13 C C1D DND . . . H 2 59.991 49.355 97.925 1 16.48 ? C1D DND 501 B 1 
HETATM 14 N N1N DND . . . H 2 60.256 48.018 97.311 1 12.26 ? N1N DND 501 B 1 
HETATM 15 C C6N DND . . . H 2 60.579 47.854 95.985 1 12.26 ? C6N DND 501 B 1 
HETATM 16 C C5N DND . . . H 2 60.819 46.604 95.415 1 15.62 ? C5N DND 501 B 1 
HETATM 17 C C4N DND . . . H 2 60.736 45.466 96.242 1 17.19 ? C4N DND 501 B 1 
HETATM 18 C C3N DND . . . H 2 60.421 45.587 97.619 1 12.29 ? C3N DND 501 B 1 
HETATM 19 C C2N DND . . . H 2 60.198 46.886 98.111 1 12.26 ? C2N DND 501 B 1 
HETATM 20 C C7N DND . . . H 2 60.332 44.382 98.486 1 15.51 ? C7N DND 501 B 1 
HETATM 21 O O7N DND . . . H 2 59.664 44.528 99.661 1 12.26 ? O7N DND 501 B 1 
HETATM 22 O O8N DND . . . H 2 60.811 43.338 98.141 1 19.98 ? O8N DND 501 B 1 
HETATM 23 P PA DND . . . H 2 62.267 54.96 93.149 1 18.68 ? PA DND 501 B 1 
HETATM 24 O O13 DND . . . H 2 63.609 55.599 93.361 1 28.53 ? O13 DND 501 B 1 
HETATM 25 O O14 DND . . . H 2 62.032 54.579 91.624 1 28.75 ? O14 DND 501 B 1 
HETATM 26 O O5B DND . . . H 2 61.096 55.929 93.556 1 25.77 ? O5B DND 501 B 1 
HETATM 27 C C5B DND . . . H 2 59.937 55.397 94.238 1 28.29 ? C5B DND 501 B 1 
HETATM 28 C C4B DND . . . H 2 58.632 56.09 93.772 1 28.32 ? C4B DND 501 B 1 
HETATM 29 O O4B DND . . . H 2 58.883 56.879 92.634 1 24.73 ? O4B DND 501 B 1 
HETATM 30 C C3B DND . . . H 2 57.491 55.111 93.34 1 22.62 ? C3B DND 501 B 1 
HETATM 31 O O3B DND . . . H 2 57.817 53.736 93.493 1 27.32 ? O3B DND 501 B 1 
HETATM 32 C C2B DND . . . H 2 57.353 55.389 91.831 1 20.38 ? C2B DND 501 B 1 
HETATM 33 O O2B DND . . . H 2 57.198 54.188 91.099 1 16.34 ? O2B DND 501 B 1 
HETATM 34 C C1B DND . . . H 2 58.644 56.124 91.485 1 22.4 ? C1B DND 501 B 1 
HETATM 35 N N9A DND . . . H 2 58.666 56.957 90.266 1 21.66 ? N9A DND 501 B 1 
HETATM 36 C C4A DND . . . H 2 57.591 57.411 89.508 1 15.56 ? C4A DND 501 B 1 
HETATM 37 N N3A DND . . . H 2 56.258 57.223 89.654 1 13.33 ? N3A DND 501 B 1 
HETATM 38 C C2A DND . . . H 2 55.452 57.798 88.726 1 12.26 ? C2A DND 501 B 1 
HETATM 39 N N1A DND . . . H 2 55.906 58.549 87.679 1 12.26 ? N1A DND 501 B 1 
HETATM 40 C C6A DND . . . H 2 57.243 58.727 87.587 1 14.98 ? C6A DND 501 B 1 
HETATM 41 C C5A DND . . . H 2 58.13 58.178 88.444 1 16.72 ? C5A DND 501 B 1 
HETATM 42 N N7A DND . . . H 2 59.492 58.183 88.532 1 21.95 ? N7A DND 501 B 1 
HETATM 43 C C8A DND . . . H 2 59.756 57.444 89.624 1 22.63 ? C8A DND 501 B 1 
HETATM 44 N N6A DND . . . H 2 57.691 59.487 86.596 1 15.12 ? N6A DND 501 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           44 
#