data_1KAQ # _model_server_result.job_id EolavcsH9Pu-IH8k0doQsg _model_server_result.datetime_utc '2024-11-23 21:17:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kaq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 1KAQ # _exptl.entry_id 1KAQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.418 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICOTINIC ACID ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KAQ _cell.length_a 78.31 _cell.length_b 108.784 _cell.length_c 177.562 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KAQ _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G,J 1 1 B,C,H,I 2 1 E,F,K,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C21 H27 N6 O15 P2 1' _chem_comp.formula_weight 665.418 _chem_comp.id DND _chem_comp.mon_nstd_flag . _chem_comp.name 'NICOTINIC ACID ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DEAMIDO-NAD+ # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O13 PA DND doub 70 n n O14 PA DND sing 71 n n PA O3P DND sing 72 n n PA O5B DND sing 73 n n O11 PN DND doub 74 n n O3P PN DND sing 75 n n O5B C5B DND sing 76 n n PN O12 DND sing 77 n n PN O5D DND sing 78 n n C5B C4B DND sing 79 n n N7A C8A DND doub 80 n y N7A C5A DND sing 81 n y C8A N9A DND sing 82 n y N6A C6A DND sing 83 n n O5D C5D DND sing 84 n n C5A C6A DND sing 85 n y C5A C4A DND doub 86 n y O4B C4B DND sing 87 n n O4B C1B DND sing 88 n n C6A N1A DND doub 89 n y C4B C3B DND sing 90 n n N9A C4A DND sing 91 n y N9A C1B DND sing 92 n n C5D C4D DND sing 93 n n C3D O3D DND sing 94 n n C3D C4D DND sing 95 n n C3D C2D DND sing 96 n n C4A N3A DND sing 97 n y C1B C2B DND sing 98 n n N1A C2A DND sing 99 n y C4D O4D DND sing 100 n n C2B C3B DND sing 101 n n C2B O2B DND sing 102 n n C2D O2D DND sing 103 n n C2D C1D DND sing 104 n n C3B O3B DND sing 105 n n N3A C2A DND doub 106 n y O4D C1D DND sing 107 n n C1D N1N DND sing 108 n n C6N N1N DND doub 109 n y C6N C5N DND sing 110 n y N1N C2N DND sing 111 n y C5N C4N DND doub 112 n y C2N C3N DND doub 113 n y C4N C3N DND sing 114 n y C3N C7N DND sing 115 n n C7N O7N DND doub 116 n n C7N O8N DND sing 117 n n O12 H1 DND sing 118 n n C5D H2 DND sing 119 n n C5D H3 DND sing 120 n n C4D H4 DND sing 121 n n C3D H5 DND sing 122 n n O3D H6 DND sing 123 n n C2D H7 DND sing 124 n n O2D H8 DND sing 125 n n C1D H9 DND sing 126 n n C6N H10 DND sing 127 n n C5N H11 DND sing 128 n n C4N H12 DND sing 129 n n C2N H13 DND sing 130 n n O8N H14 DND sing 131 n n O14 H15 DND sing 132 n n C5B H16 DND sing 133 n n C5B H17 DND sing 134 n n C4B H18 DND sing 135 n n C3B H19 DND sing 136 n n O3B H20 DND sing 137 n n C2B H21 DND sing 138 n n O2B H22 DND sing 139 n n C1B H23 DND sing 140 n n C2A H24 DND sing 141 n n C8A H25 DND sing 142 n n N6A H26 DND sing 143 n n N6A H27 DND sing 144 n n # _atom_sites.entry_id 1KAQ _atom_sites.fract_transf_matrix[1][1] 0.01277 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005632 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 DND A 1 601 601 DND DND . H 2 DND B 1 501 501 DND DND . I 2 DND C 1 401 401 DND DND . J 2 DND D 1 301 301 DND DND . K 2 DND E 1 201 201 DND DND . L 2 DND F 1 190 101 DND DND . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PN DND . . . G 2 21.558 56.328 94.429 1 12.26 ? PN DND 601 A 1 HETATM 2 O O11 DND . . . G 2 20.15 56.261 94.919 1 15.68 ? O11 DND 601 A 1 HETATM 3 O O12 DND . . . G 2 21.597 56.937 92.957 1 17.07 ? O12 DND 601 A 1 HETATM 4 O O3P DND . . . G 2 22.145 54.939 94.428 1 14.17 ? O3P DND 601 A 1 HETATM 5 O O5D DND . . . G 2 22.41 57.321 95.32 1 17.43 ? O5D DND 601 A 1 HETATM 6 C C5D DND . . . G 2 23.741 56.996 95.738 1 16.16 ? C5D DND 601 A 1 HETATM 7 C C4D DND . . . G 2 23.989 57.44 97.207 1 16.17 ? C4D DND 601 A 1 HETATM 8 O O4D DND . . . G 2 24.657 58.698 97.26 1 12.26 ? O4D DND 601 A 1 HETATM 9 C C3D DND . . . G 2 22.738 57.608 98.042 1 16.06 ? C3D DND 601 A 1 HETATM 10 O O3D DND . . . G 2 22.398 56.445 98.748 1 34.16 ? O3D DND 601 A 1 HETATM 11 C C2D DND . . . G 2 23.111 58.672 99.052 1 17.53 ? C2D DND 601 A 1 HETATM 12 O O2D DND . . . G 2 23.685 58.043 100.159 1 20.07 ? O2D DND 601 A 1 HETATM 13 C C1D DND . . . G 2 24.194 59.485 98.35 1 13.67 ? C1D DND 601 A 1 HETATM 14 N N1N DND . . . G 2 23.764 60.816 97.799 1 12.26 ? N1N DND 601 A 1 HETATM 15 C C6N DND . . . G 2 23.209 60.992 96.538 1 12.34 ? C6N DND 601 A 1 HETATM 16 C C5N DND . . . G 2 22.819 62.246 96.058 1 12.26 ? C5N DND 601 A 1 HETATM 17 C C4N DND . . . G 2 22.974 63.364 96.894 1 19.23 ? C4N DND 601 A 1 HETATM 18 C C3N DND . . . G 2 23.526 63.217 98.193 1 16.56 ? C3N DND 601 A 1 HETATM 19 C C2N DND . . . G 2 23.903 61.932 98.594 1 12.56 ? C2N DND 601 A 1 HETATM 20 C C7N DND . . . G 2 23.708 64.376 99.099 1 16.51 ? C7N DND 601 A 1 HETATM 21 O O7N DND . . . G 2 24.031 64.077 100.381 1 21.71 ? O7N DND 601 A 1 HETATM 22 O O8N DND . . . G 2 23.59 65.501 98.707 1 22.61 ? O8N DND 601 A 1 HETATM 23 P PA DND . . . G 2 21.634 53.591 93.867 1 19.09 ? PA DND 601 A 1 HETATM 24 O O13 DND . . . G 2 20.315 53.176 94.495 1 16.91 ? O13 DND 601 A 1 HETATM 25 O O14 DND . . . G 2 21.531 53.671 92.26 1 15.06 ? O14 DND 601 A 1 HETATM 26 O O5B DND . . . G 2 22.783 52.579 94.195 1 18.31 ? O5B DND 601 A 1 HETATM 27 C C5B DND . . . G 2 23.987 53.096 94.793 1 20.83 ? C5B DND 601 A 1 HETATM 28 C C4B DND . . . G 2 25.261 52.484 94.152 1 18.17 ? C4B DND 601 A 1 HETATM 29 O O4B DND . . . G 2 24.937 51.744 93.01 1 21.22 ? O4B DND 601 A 1 HETATM 30 C C3B DND . . . G 2 26.333 53.515 93.676 1 20.69 ? C3B DND 601 A 1 HETATM 31 O O3B DND . . . G 2 25.973 54.863 93.886 1 12.26 ? O3B DND 601 A 1 HETATM 32 C C2B DND . . . G 2 26.414 53.298 92.158 1 19.57 ? C2B DND 601 A 1 HETATM 33 O O2B DND . . . G 2 26.454 54.545 91.484 1 26.83 ? O2B DND 601 A 1 HETATM 34 C C1B DND . . . G 2 25.147 52.502 91.853 1 18.78 ? C1B DND 601 A 1 HETATM 35 N N9A DND . . . G 2 25.126 51.651 90.659 1 17.42 ? N9A DND 601 A 1 HETATM 36 C C4A DND . . . G 2 26.195 51.095 89.991 1 14.72 ? C4A DND 601 A 1 HETATM 37 N N3A DND . . . G 2 27.519 51.177 90.229 1 12.26 ? N3A DND 601 A 1 HETATM 38 C C2A DND . . . G 2 28.343 50.516 89.371 1 12.26 ? C2A DND 601 A 1 HETATM 39 N N1A DND . . . G 2 27.915 49.78 88.302 1 12.26 ? N1A DND 601 A 1 HETATM 40 C C6A DND . . . G 2 26.568 49.713 88.104 1 12.26 ? C6A DND 601 A 1 HETATM 41 C C5A DND . . . G 2 25.665 50.352 88.907 1 12.26 ? C5A DND 601 A 1 HETATM 42 N N7A DND . . . G 2 24.306 50.461 88.917 1 16.1 ? N7A DND 601 A 1 HETATM 43 C C8A DND . . . G 2 24.044 51.238 89.976 1 18.39 ? C8A DND 601 A 1 HETATM 44 N N6A DND . . . G 2 26.125 48.985 87.06 1 14.05 ? N6A DND 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 44 #