data_1KAV # _model_server_result.job_id DNM-t0fV1Ri-3uan6pmIOg _model_server_result.datetime_utc '2024-12-26 13:10:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kav # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 1KAV # _exptl.entry_id 1KAV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 470.289 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(4-{4-[4-(DIFLUORO-PHOSPHONO-METHYL)-PHENYL]-BUTYL}-PHENYL)-DIFLUORO-METHYL]-PHOSPHONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1KAV _cell.length_a 89.22 _cell.length_b 89.22 _cell.length_c 108.782 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KAV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H20 F4 O6 P2' _chem_comp.formula_weight 470.289 _chem_comp.id FEP _chem_comp.mon_nstd_flag . _chem_comp.name '[(4-{4-[4-(DIFLUORO-PHOSPHONO-METHYL)-PHENYL]-BUTYL}-PHENYL)-DIFLUORO-METHYL]-PHOSPHONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FEP sing 83 n n C1 C6 FEP sing 84 n n C1 HC11 FEP sing 85 n n C1 HC12 FEP sing 86 n n C2 C3 FEP sing 87 n n C2 HC21 FEP sing 88 n n C2 HC22 FEP sing 89 n n C3 C4 FEP sing 90 n n C3 HC31 FEP sing 91 n n C3 HC32 FEP sing 92 n n C4 C13 FEP sing 93 n n C4 HC41 FEP sing 94 n n C4 HC42 FEP sing 95 n n C5 C9 FEP sing 96 n n C5 F1 FEP sing 97 n n C5 F2 FEP sing 98 n n C5 P1 FEP sing 99 n n C6 C7 FEP doub 100 n y C6 C11 FEP sing 101 n y C7 C8 FEP sing 102 n y C7 HC7 FEP sing 103 n n C8 C9 FEP doub 104 n y C8 HC8 FEP sing 105 n n C9 C10 FEP sing 106 n y C10 C11 FEP doub 107 n y C10 H10 FEP sing 108 n n C11 H11 FEP sing 109 n n C12 C16 FEP sing 110 n n C12 F3 FEP sing 111 n n C12 F4 FEP sing 112 n n C12 P2 FEP sing 113 n n C13 C14 FEP doub 114 n y C13 C18 FEP sing 115 n y C14 C15 FEP sing 116 n y C14 H14 FEP sing 117 n n C15 C16 FEP doub 118 n y C15 H15 FEP sing 119 n n C16 C17 FEP sing 120 n y C17 C18 FEP doub 121 n y C17 H17 FEP sing 122 n n C18 H18 FEP sing 123 n n P1 OP1 FEP doub 124 n n P1 OP2 FEP sing 125 n n P1 OP3 FEP sing 126 n n OP2 HO2 FEP sing 127 n n OP3 HO3 FEP sing 128 n n P2 OP4 FEP doub 129 n n P2 OP5 FEP sing 130 n n P2 OP6 FEP sing 131 n n OP5 HO5 FEP sing 132 n n OP6 HO6 FEP sing 133 n n # _atom_sites.entry_id 1KAV _atom_sites.fract_transf_matrix[1][1] 0.011208 _atom_sites.fract_transf_matrix[1][2] 0.006471 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012942 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FEP A 1 301 301 FEP FEP . C 3 HOH A 1 400 400 HOH HOH . C 3 HOH A 2 401 401 HOH HOH . C 3 HOH A 3 402 402 HOH HOH . C 3 HOH A 4 403 403 HOH HOH . C 3 HOH A 5 404 404 HOH HOH . C 3 HOH A 6 405 405 HOH HOH . C 3 HOH A 7 406 406 HOH HOH . C 3 HOH A 8 407 407 HOH HOH . C 3 HOH A 9 408 408 HOH HOH . C 3 HOH A 10 409 409 HOH HOH . C 3 HOH A 11 410 410 HOH HOH . C 3 HOH A 12 411 411 HOH HOH . C 3 HOH A 13 412 412 HOH HOH . C 3 HOH A 14 413 413 HOH HOH . C 3 HOH A 15 414 414 HOH HOH . C 3 HOH A 16 415 415 HOH HOH . C 3 HOH A 17 416 416 HOH HOH . C 3 HOH A 18 417 417 HOH HOH . C 3 HOH A 19 418 418 HOH HOH . C 3 HOH A 20 419 419 HOH HOH . C 3 HOH A 21 420 420 HOH HOH . C 3 HOH A 22 421 421 HOH HOH . C 3 HOH A 23 422 422 HOH HOH . C 3 HOH A 24 423 423 HOH HOH . C 3 HOH A 25 424 424 HOH HOH . C 3 HOH A 26 425 425 HOH HOH . C 3 HOH A 27 426 426 HOH HOH . C 3 HOH A 28 427 427 HOH HOH . C 3 HOH A 29 428 428 HOH HOH . C 3 HOH A 30 429 429 HOH HOH . C 3 HOH A 31 430 430 HOH HOH . C 3 HOH A 32 431 431 HOH HOH . C 3 HOH A 33 432 432 HOH HOH . C 3 HOH A 34 433 433 HOH HOH . C 3 HOH A 35 434 434 HOH HOH . C 3 HOH A 36 435 435 HOH HOH . C 3 HOH A 37 436 436 HOH HOH . C 3 HOH A 38 437 437 HOH HOH . C 3 HOH A 39 438 438 HOH HOH . C 3 HOH A 40 439 439 HOH HOH . C 3 HOH A 41 440 440 HOH HOH . C 3 HOH A 42 441 441 HOH HOH . C 3 HOH A 43 442 442 HOH HOH . C 3 HOH A 44 443 443 HOH HOH . C 3 HOH A 45 444 444 HOH HOH . C 3 HOH A 46 445 445 HOH HOH . C 3 HOH A 47 446 446 HOH HOH . C 3 HOH A 48 447 447 HOH HOH . C 3 HOH A 49 448 448 HOH HOH . C 3 HOH A 50 449 449 HOH HOH . C 3 HOH A 51 450 450 HOH HOH . C 3 HOH A 52 451 451 HOH HOH . C 3 HOH A 53 452 452 HOH HOH . C 3 HOH A 54 453 453 HOH HOH . C 3 HOH A 55 454 454 HOH HOH . C 3 HOH A 56 455 455 HOH HOH . C 3 HOH A 57 456 456 HOH HOH . C 3 HOH A 58 457 457 HOH HOH . C 3 HOH A 59 458 458 HOH HOH . C 3 HOH A 60 459 459 HOH HOH . C 3 HOH A 61 460 460 HOH HOH . C 3 HOH A 62 461 461 HOH HOH . C 3 HOH A 63 462 462 HOH HOH . C 3 HOH A 64 463 463 HOH HOH . C 3 HOH A 65 464 464 HOH HOH . C 3 HOH A 66 465 465 HOH HOH . C 3 HOH A 67 466 466 HOH HOH . C 3 HOH A 68 467 467 HOH HOH . C 3 HOH A 69 468 468 HOH HOH . C 3 HOH A 70 469 469 HOH HOH . C 3 HOH A 71 470 470 HOH HOH . C 3 HOH A 72 471 471 HOH HOH . C 3 HOH A 73 472 472 HOH HOH . C 3 HOH A 74 473 473 HOH HOH . C 3 HOH A 75 474 474 HOH HOH . C 3 HOH A 76 475 475 HOH HOH . C 3 HOH A 77 476 476 HOH HOH . C 3 HOH A 78 477 477 HOH HOH . C 3 HOH A 79 478 478 HOH HOH . C 3 HOH A 80 479 479 HOH HOH . C 3 HOH A 81 480 480 HOH HOH . C 3 HOH A 82 481 481 HOH HOH . C 3 HOH A 83 482 482 HOH HOH . C 3 HOH A 84 483 483 HOH HOH . C 3 HOH A 85 484 484 HOH HOH . C 3 HOH A 86 485 485 HOH HOH . C 3 HOH A 87 486 486 HOH HOH . C 3 HOH A 88 487 487 HOH HOH . C 3 HOH A 89 488 488 HOH HOH . C 3 HOH A 90 489 489 HOH HOH . C 3 HOH A 91 490 490 HOH HOH . C 3 HOH A 92 491 491 HOH HOH . C 3 HOH A 93 492 492 HOH HOH . C 3 HOH A 94 493 493 HOH HOH . C 3 HOH A 95 494 494 HOH HOH . C 3 HOH A 96 495 495 HOH HOH . C 3 HOH A 97 496 496 HOH HOH . C 3 HOH A 98 497 497 HOH HOH . C 3 HOH A 99 498 498 HOH HOH . C 3 HOH A 100 499 499 HOH HOH . C 3 HOH A 101 500 500 HOH HOH . C 3 HOH A 102 501 501 HOH HOH . C 3 HOH A 103 502 502 HOH HOH . C 3 HOH A 104 503 503 HOH HOH . C 3 HOH A 105 504 504 HOH HOH . C 3 HOH A 106 505 505 HOH HOH . C 3 HOH A 107 506 506 HOH HOH . C 3 HOH A 108 507 507 HOH HOH . C 3 HOH A 109 508 508 HOH HOH . C 3 HOH A 110 509 509 HOH HOH . C 3 HOH A 111 510 510 HOH HOH . C 3 HOH A 112 511 511 HOH HOH . C 3 HOH A 113 512 512 HOH HOH . C 3 HOH A 114 513 513 HOH HOH . C 3 HOH A 115 514 514 HOH HOH . C 3 HOH A 116 515 515 HOH HOH . C 3 HOH A 117 516 516 HOH HOH . C 3 HOH A 118 517 517 HOH HOH . C 3 HOH A 119 518 518 HOH HOH . C 3 HOH A 120 519 519 HOH HOH . C 3 HOH A 121 520 520 HOH HOH . C 3 HOH A 122 521 521 HOH HOH . C 3 HOH A 123 526 526 HOH HOH . C 3 HOH A 124 527 527 HOH HOH . C 3 HOH A 125 529 529 HOH HOH . C 3 HOH A 126 530 530 HOH HOH . C 3 HOH A 127 531 531 HOH HOH . C 3 HOH A 128 532 532 HOH HOH . C 3 HOH A 129 536 536 HOH HOH . C 3 HOH A 130 541 541 HOH HOH . C 3 HOH A 131 545 545 HOH HOH . C 3 HOH A 132 547 547 HOH HOH . C 3 HOH A 133 548 548 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FEP . . . B 2 32.565 10.376 90.186 1 35.03 ? C1 FEP 301 A 1 HETATM 2 C C2 FEP . . . B 2 33.923 10.112 90.09 1 42.58 ? C2 FEP 301 A 1 HETATM 3 C C3 FEP . . . B 2 34.626 9.885 91.27 1 50.24 ? C3 FEP 301 A 1 HETATM 4 C C4 FEP . . . B 2 34.667 10.842 92.279 1 57.38 ? C4 FEP 301 A 1 HETATM 5 C C5 FEP . . . B 2 28.471 10.817 86.684 1 23.81 ? C5 FEP 301 A 1 HETATM 6 C C6 FEP . . . B 2 31.796 10.63 89.071 1 29.96 ? C6 FEP 301 A 1 HETATM 7 C C7 FEP . . . B 2 31.433 9.55 88.264 1 27.33 ? C7 FEP 301 A 1 HETATM 8 C C8 FEP . . . B 2 30.287 9.597 87.477 1 24.62 ? C8 FEP 301 A 1 HETATM 9 C C9 FEP . . . B 2 29.475 10.727 87.481 1 23.73 ? C9 FEP 301 A 1 HETATM 10 C C10 FEP . . . B 2 29.846 11.813 88.287 1 22.2 ? C10 FEP 301 A 1 HETATM 11 C C11 FEP . . . B 2 30.998 11.775 89.081 1 26.54 ? C11 FEP 301 A 1 HETATM 12 C C12 FEP . . . B 2 37.637 10.739 96.857 1 74.98 ? C12 FEP 301 A 1 HETATM 13 C C13 FEP . . . B 2 35.394 10.619 93.45 1 62.77 ? C13 FEP 301 A 1 HETATM 14 C C14 FEP . . . B 2 34.81 10.938 94.678 1 65.2 ? C14 FEP 301 A 1 HETATM 15 C C15 FEP . . . B 2 35.584 11.011 95.835 1 69.51 ? C15 FEP 301 A 1 HETATM 16 C C16 FEP . . . B 2 36.959 10.764 95.779 1 72.49 ? C16 FEP 301 A 1 HETATM 17 C C17 FEP . . . B 2 37.556 10.439 94.532 1 68.58 ? C17 FEP 301 A 1 HETATM 18 C C18 FEP . . . B 2 36.773 10.37 93.38 1 64.72 ? C18 FEP 301 A 1 HETATM 19 F F1 FEP . . . B 2 28.062 9.348 86.414 1 21.85 ? F1 FEP 301 A 1 HETATM 20 F F2 FEP . . . B 2 27.631 11.301 87.29 1 27.31 ? F2 FEP 301 A 1 HETATM 21 P P1 FEP . . . B 2 28.403 11.417 84.888 1 21.55 ? P1 FEP 301 A 1 HETATM 22 O OP1 FEP . . . B 2 28.813 12.946 84.881 1 18.68 ? OP1 FEP 301 A 1 HETATM 23 O OP2 FEP . . . B 2 26.94 11.201 84.266 1 16.74 ? OP2 FEP 301 A 1 HETATM 24 O OP3 FEP . . . B 2 29.46 10.555 84.051 1 21.45 ? OP3 FEP 301 A 1 HETATM 25 F F3 FEP . . . B 2 37.709 9.231 97.199 1 76.7 ? F3 FEP 301 A 1 HETATM 26 F F4 FEP . . . B 2 38.674 11.088 96.575 1 77.72 ? F4 FEP 301 A 1 HETATM 27 P P2 FEP . . . B 2 37.206 11.369 98.615 1 76.97 ? P2 FEP 301 A 1 HETATM 28 O OP4 FEP . . . B 2 37.181 12.995 98.601 1 75.78 ? OP4 FEP 301 A 1 HETATM 29 O OP5 FEP . . . B 2 38.337 10.865 99.669 1 75.66 ? OP5 FEP 301 A 1 HETATM 30 O OP6 FEP . . . B 2 35.749 10.808 99.055 1 75.6 ? OP6 FEP 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #