data_1KBK # _model_server_result.job_id eFIZSm4bZ-w68vBi08mcuw _model_server_result.datetime_utc '2025-03-01 00:52:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kbk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":497}' # _entry.id 1KBK # _exptl.entry_id 1KBK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KBK _cell.length_a 52.88 _cell.length_b 69.52 _cell.length_c 131.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KBK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 86 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 70 A CYS 70 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 141 A CYS 141 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 378 A CYS 378 1_555 A SG CYS 384 A CYS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 450 A CYS 450 1_555 A SG CYS 462 A CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc1 A OD1 ASN 100 A ASN 100 1_555 C CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc2 A O ARG 158 A ARG 158 1_555 C CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc3 A OD2 ASP 167 A ASP 167 1_555 C CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc4 A OD1 ASP 167 A ASP 167 1_555 C CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc5 A O HIS 201 A HIS 201 1_555 C CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc6 C CA CA . A CA 497 1_555 E O HOH . A HOH 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc7 C CA CA . A CA 497 1_555 E O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1KBK _atom_sites.fract_transf_matrix[1][1] 0.018911 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014384 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 499 499 NAG NAG . C 3 CA A 1 497 497 CA CA . D 4 CL A 1 498 498 CL CL . E 5 HOH A 1 501 501 HOH HOH . E 5 HOH A 2 502 502 HOH HOH . E 5 HOH A 3 503 503 HOH HOH . E 5 HOH A 4 504 504 HOH HOH . E 5 HOH A 5 505 505 HOH HOH . E 5 HOH A 6 506 506 HOH HOH . E 5 HOH A 7 507 507 HOH HOH . E 5 HOH A 8 508 508 HOH HOH . E 5 HOH A 9 509 509 HOH HOH . E 5 HOH A 10 510 510 HOH HOH . E 5 HOH A 11 511 511 HOH HOH . E 5 HOH A 12 512 512 HOH HOH . E 5 HOH A 13 513 513 HOH HOH . E 5 HOH A 14 514 514 HOH HOH . E 5 HOH A 15 515 515 HOH HOH . E 5 HOH A 16 516 516 HOH HOH . E 5 HOH A 17 517 517 HOH HOH . E 5 HOH A 18 518 518 HOH HOH . E 5 HOH A 19 519 519 HOH HOH . E 5 HOH A 20 520 520 HOH HOH . E 5 HOH A 21 521 521 HOH HOH . E 5 HOH A 22 522 522 HOH HOH . E 5 HOH A 23 523 523 HOH HOH . E 5 HOH A 24 524 524 HOH HOH . E 5 HOH A 25 525 525 HOH HOH . E 5 HOH A 26 526 526 HOH HOH . E 5 HOH A 27 527 527 HOH HOH . E 5 HOH A 28 528 528 HOH HOH . E 5 HOH A 29 529 529 HOH HOH . E 5 HOH A 30 530 530 HOH HOH . E 5 HOH A 31 531 531 HOH HOH . E 5 HOH A 32 532 532 HOH HOH . E 5 HOH A 33 533 533 HOH HOH . E 5 HOH A 34 534 534 HOH HOH . E 5 HOH A 35 535 535 HOH HOH . E 5 HOH A 36 536 536 HOH HOH . E 5 HOH A 37 537 537 HOH HOH . E 5 HOH A 38 538 538 HOH HOH . E 5 HOH A 39 539 539 HOH HOH . E 5 HOH A 40 540 540 HOH HOH . E 5 HOH A 41 541 541 HOH HOH . E 5 HOH A 42 542 542 HOH HOH . E 5 HOH A 43 543 543 HOH HOH . E 5 HOH A 44 544 544 HOH HOH . E 5 HOH A 45 545 545 HOH HOH . E 5 HOH A 46 546 546 HOH HOH . E 5 HOH A 47 547 547 HOH HOH . E 5 HOH A 48 548 548 HOH HOH . E 5 HOH A 49 549 549 HOH HOH . E 5 HOH A 50 550 550 HOH HOH . E 5 HOH A 51 551 551 HOH HOH . E 5 HOH A 52 552 552 HOH HOH . E 5 HOH A 53 553 553 HOH HOH . E 5 HOH A 54 554 554 HOH HOH . E 5 HOH A 55 555 555 HOH HOH . E 5 HOH A 56 556 556 HOH HOH . E 5 HOH A 57 557 557 HOH HOH . E 5 HOH A 58 558 558 HOH HOH . E 5 HOH A 59 559 559 HOH HOH . E 5 HOH A 60 560 560 HOH HOH . E 5 HOH A 61 561 561 HOH HOH . E 5 HOH A 62 562 562 HOH HOH . E 5 HOH A 63 563 563 HOH HOH . E 5 HOH A 64 564 564 HOH HOH . E 5 HOH A 65 565 565 HOH HOH . E 5 HOH A 66 566 566 HOH HOH . E 5 HOH A 67 567 567 HOH HOH . E 5 HOH A 68 568 568 HOH HOH . E 5 HOH A 69 569 569 HOH HOH . E 5 HOH A 70 570 570 HOH HOH . E 5 HOH A 71 572 572 HOH HOH . E 5 HOH A 72 573 573 HOH HOH . E 5 HOH A 73 574 574 HOH HOH . E 5 HOH A 74 576 576 HOH HOH . E 5 HOH A 75 577 577 HOH HOH . E 5 HOH A 76 578 578 HOH HOH . E 5 HOH A 77 579 579 HOH HOH . E 5 HOH A 78 580 580 HOH HOH . E 5 HOH A 79 581 581 HOH HOH . E 5 HOH A 80 582 582 HOH HOH . E 5 HOH A 81 583 583 HOH HOH . E 5 HOH A 82 584 584 HOH HOH . E 5 HOH A 83 585 585 HOH HOH . E 5 HOH A 84 587 587 HOH HOH . E 5 HOH A 85 588 588 HOH HOH . E 5 HOH A 86 589 589 HOH HOH . E 5 HOH A 87 590 590 HOH HOH . E 5 HOH A 88 591 591 HOH HOH . E 5 HOH A 89 593 593 HOH HOH . E 5 HOH A 90 594 594 HOH HOH . E 5 HOH A 91 595 595 HOH HOH . E 5 HOH A 92 597 597 HOH HOH . E 5 HOH A 93 599 599 HOH HOH . E 5 HOH A 94 601 601 HOH HOH . E 5 HOH A 95 603 603 HOH HOH . E 5 HOH A 96 604 604 HOH HOH . E 5 HOH A 97 605 605 HOH HOH . E 5 HOH A 98 606 606 HOH HOH . E 5 HOH A 99 607 607 HOH HOH . E 5 HOH A 100 610 610 HOH HOH . E 5 HOH A 101 611 611 HOH HOH . E 5 HOH A 102 613 613 HOH HOH . E 5 HOH A 103 614 614 HOH HOH . E 5 HOH A 104 615 615 HOH HOH . E 5 HOH A 105 616 616 HOH HOH . E 5 HOH A 106 617 617 HOH HOH . E 5 HOH A 107 618 618 HOH HOH . E 5 HOH A 108 619 619 HOH HOH . E 5 HOH A 109 621 621 HOH HOH . E 5 HOH A 110 622 622 HOH HOH . E 5 HOH A 111 625 625 HOH HOH . E 5 HOH A 112 626 626 HOH HOH . E 5 HOH A 113 627 627 HOH HOH . E 5 HOH A 114 628 628 HOH HOH . E 5 HOH A 115 631 631 HOH HOH . E 5 HOH A 116 633 633 HOH HOH . E 5 HOH A 117 634 634 HOH HOH . E 5 HOH A 118 635 635 HOH HOH . E 5 HOH A 119 636 636 HOH HOH . E 5 HOH A 120 637 637 HOH HOH . E 5 HOH A 121 639 639 HOH HOH . E 5 HOH A 122 640 640 HOH HOH . E 5 HOH A 123 641 641 HOH HOH . E 5 HOH A 124 642 642 HOH HOH . E 5 HOH A 125 645 645 HOH HOH . E 5 HOH A 126 653 653 HOH HOH . E 5 HOH A 127 654 654 HOH HOH . E 5 HOH A 128 655 655 HOH HOH . E 5 HOH A 129 656 656 HOH HOH . E 5 HOH A 130 657 657 HOH HOH . E 5 HOH A 131 660 660 HOH HOH . E 5 HOH A 132 663 663 HOH HOH . E 5 HOH A 133 666 666 HOH HOH . E 5 HOH A 134 668 668 HOH HOH . E 5 HOH A 135 670 670 HOH HOH . E 5 HOH A 136 678 678 HOH HOH . E 5 HOH A 137 684 684 HOH HOH . E 5 HOH A 138 685 685 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 10.105 _atom_site.Cartn_y 6.43 _atom_site.Cartn_z 48.374 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 497 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #