data_1KC3 # _model_server_result.job_id cPB6LOVFh195O0d0k7BySA _model_server_result.datetime_utc '2025-02-05 06:42:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kc3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 1KC3 # _exptl.entry_id 1KC3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KC3 _cell.length_a 47.98 _cell.length_b 72.261 _cell.length_c 82.682 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KC3 _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B MG MG . A MG 501 1_555 E O HOH . A HOH 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc2 B MG MG . A MG 501 1_555 E O HOH . A HOH 908 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc3 B MG MG . A MG 501 1_555 E O HOH . A HOH 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc4 B MG MG . A MG 501 1_555 E O HOH . A HOH 909 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc5 B MG MG . A MG 501 1_555 E O HOH . A HOH 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc6 B MG MG . A MG 501 1_555 E O HOH . A HOH 910 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 1KC3 _atom_sites.fract_transf_matrix[1][1] 0.020842 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012095 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 501 501 MG MG . C 3 NDP A 1 901 901 NDP NDP . D 4 TRH A 1 601 601 TRH TRH . E 5 HOH A 1 902 1 HOH HOH . E 5 HOH A 2 903 2 HOH HOH . E 5 HOH A 3 904 3 HOH HOH . E 5 HOH A 4 905 4 HOH HOH . E 5 HOH A 5 906 5 HOH HOH . E 5 HOH A 6 907 6 HOH HOH . E 5 HOH A 7 908 7 HOH HOH . E 5 HOH A 8 909 8 HOH HOH . E 5 HOH A 9 910 9 HOH HOH . E 5 HOH A 10 911 10 HOH HOH . E 5 HOH A 11 912 11 HOH HOH . E 5 HOH A 12 913 12 HOH HOH . E 5 HOH A 13 914 13 HOH HOH . E 5 HOH A 14 915 14 HOH HOH . E 5 HOH A 15 916 15 HOH HOH . E 5 HOH A 16 917 16 HOH HOH . E 5 HOH A 17 918 17 HOH HOH . E 5 HOH A 18 919 18 HOH HOH . E 5 HOH A 19 920 19 HOH HOH . E 5 HOH A 20 921 20 HOH HOH . E 5 HOH A 21 922 21 HOH HOH . E 5 HOH A 22 923 22 HOH HOH . E 5 HOH A 23 924 23 HOH HOH . E 5 HOH A 24 925 24 HOH HOH . E 5 HOH A 25 926 25 HOH HOH . E 5 HOH A 26 927 26 HOH HOH . E 5 HOH A 27 928 27 HOH HOH . E 5 HOH A 28 929 28 HOH HOH . E 5 HOH A 29 930 29 HOH HOH . E 5 HOH A 30 931 30 HOH HOH . E 5 HOH A 31 932 31 HOH HOH . E 5 HOH A 32 933 32 HOH HOH . E 5 HOH A 33 934 33 HOH HOH . E 5 HOH A 34 935 34 HOH HOH . E 5 HOH A 35 936 35 HOH HOH . E 5 HOH A 36 937 36 HOH HOH . E 5 HOH A 37 938 37 HOH HOH . E 5 HOH A 38 939 38 HOH HOH . E 5 HOH A 39 940 39 HOH HOH . E 5 HOH A 40 941 40 HOH HOH . E 5 HOH A 41 942 41 HOH HOH . E 5 HOH A 42 943 42 HOH HOH . E 5 HOH A 43 944 43 HOH HOH . E 5 HOH A 44 945 44 HOH HOH . E 5 HOH A 45 946 45 HOH HOH . E 5 HOH A 46 947 46 HOH HOH . E 5 HOH A 47 948 47 HOH HOH . E 5 HOH A 48 949 48 HOH HOH . E 5 HOH A 49 950 49 HOH HOH . E 5 HOH A 50 951 50 HOH HOH . E 5 HOH A 51 952 51 HOH HOH . E 5 HOH A 52 953 52 HOH HOH . E 5 HOH A 53 954 53 HOH HOH . E 5 HOH A 54 955 54 HOH HOH . E 5 HOH A 55 956 55 HOH HOH . E 5 HOH A 56 957 56 HOH HOH . E 5 HOH A 57 958 57 HOH HOH . E 5 HOH A 58 959 58 HOH HOH . E 5 HOH A 59 960 59 HOH HOH . E 5 HOH A 60 961 60 HOH HOH . E 5 HOH A 61 962 61 HOH HOH . E 5 HOH A 62 963 62 HOH HOH . E 5 HOH A 63 964 63 HOH HOH . E 5 HOH A 64 965 64 HOH HOH . E 5 HOH A 65 966 65 HOH HOH . E 5 HOH A 66 967 66 HOH HOH . E 5 HOH A 67 968 67 HOH HOH . E 5 HOH A 68 969 68 HOH HOH . E 5 HOH A 69 970 69 HOH HOH . E 5 HOH A 70 971 70 HOH HOH . E 5 HOH A 71 972 71 HOH HOH . E 5 HOH A 72 973 72 HOH HOH . E 5 HOH A 73 974 73 HOH HOH . E 5 HOH A 74 975 74 HOH HOH . E 5 HOH A 75 976 75 HOH HOH . E 5 HOH A 76 977 76 HOH HOH . E 5 HOH A 77 978 77 HOH HOH . E 5 HOH A 78 979 78 HOH HOH . E 5 HOH A 79 980 79 HOH HOH . E 5 HOH A 80 981 80 HOH HOH . E 5 HOH A 81 982 81 HOH HOH . E 5 HOH A 82 983 82 HOH HOH . E 5 HOH A 83 984 83 HOH HOH . E 5 HOH A 84 985 84 HOH HOH . E 5 HOH A 85 986 85 HOH HOH . E 5 HOH A 86 987 86 HOH HOH . E 5 HOH A 87 988 87 HOH HOH . E 5 HOH A 88 989 88 HOH HOH . E 5 HOH A 89 990 89 HOH HOH . E 5 HOH A 90 991 90 HOH HOH . E 5 HOH A 91 992 91 HOH HOH . E 5 HOH A 92 993 92 HOH HOH . E 5 HOH A 93 994 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 3 8.614 -13.832 15.644 1 83.59 ? PA NDP 901 A 1 HETATM 2 O O1A NDP . . . C 3 9.203 -14.938 14.782 1 86.75 ? O1A NDP 901 A 1 HETATM 3 O O2A NDP . . . C 3 7.93 -12.71 14.889 1 80.92 ? O2A NDP 901 A 1 HETATM 4 O O5B NDP . . . C 3 9.798 -13.295 16.607 1 87.78 ? O5B NDP 901 A 1 HETATM 5 C C5B NDP . . . C 3 10.899 -14.018 17.128 1 89.61 ? C5B NDP 901 A 1 HETATM 6 C C4B NDP . . . C 3 12.2 -13.235 16.939 1 90.53 ? C4B NDP 901 A 1 HETATM 7 O O4B NDP . . . C 3 13.366 -14.026 17.09 1 92.03 ? O4B NDP 901 A 1 HETATM 8 C C3B NDP . . . C 3 12.329 -12.626 15.554 1 92.24 ? C3B NDP 901 A 1 HETATM 9 O O3B NDP . . . C 3 12.669 -11.274 15.701 1 91.45 ? O3B NDP 901 A 1 HETATM 10 C C2B NDP . . . C 3 13.442 -13.393 14.896 1 94.02 ? C2B NDP 901 A 1 HETATM 11 O O2B NDP . . . C 3 13.924 -12.692 13.715 1 96.29 ? O2B NDP 901 A 1 HETATM 12 C C1B NDP . . . C 3 14.311 -13.557 16.074 1 93.35 ? C1B NDP 901 A 1 HETATM 13 N N9A NDP . . . C 3 15.356 -14.497 15.828 1 93.67 ? N9A NDP 901 A 1 HETATM 14 C C8A NDP . . . C 3 15.454 -15.577 14.957 1 92.81 ? C8A NDP 901 A 1 HETATM 15 N N7A NDP . . . C 3 16.654 -16.128 15.101 1 92.24 ? N7A NDP 901 A 1 HETATM 16 C C5A NDP . . . C 3 17.3 -15.422 16.028 1 92.32 ? C5A NDP 901 A 1 HETATM 17 C C6A NDP . . . C 3 18.568 -15.565 16.565 1 92.29 ? C6A NDP 901 A 1 HETATM 18 N N6A NDP . . . C 3 19.511 -16.52 16.207 1 93.86 ? N6A NDP 901 A 1 HETATM 19 N N1A NDP . . . C 3 18.936 -14.639 17.522 1 92.15 ? N1A NDP 901 A 1 HETATM 20 C C2A NDP . . . C 3 18.1 -13.618 17.968 1 92.82 ? C2A NDP 901 A 1 HETATM 21 N N3A NDP . . . C 3 16.844 -13.485 17.447 1 92.55 ? N3A NDP 901 A 1 HETATM 22 C C4A NDP . . . C 3 16.49 -14.388 16.492 1 93.29 ? C4A NDP 901 A 1 HETATM 23 O O3 NDP . . . C 3 7.769 -14.573 16.734 1 86.78 ? O3 NDP 901 A 1 HETATM 24 P PN NDP . . . C 3 6.696 -13.776 17.603 1 89.34 ? PN NDP 901 A 1 HETATM 25 O O1N NDP . . . C 3 6.999 -12.315 17.835 1 89.61 ? O1N NDP 901 A 1 HETATM 26 O O2N NDP . . . C 3 5.312 -14.248 17.139 1 90.21 ? O2N NDP 901 A 1 HETATM 27 O O5D NDP . . . C 3 6.741 -14.429 19.072 1 90.09 ? O5D NDP 901 A 1 HETATM 28 C C5D NDP . . . C 3 7.483 -13.829 20.13 1 90.86 ? C5D NDP 901 A 1 HETATM 29 C C4D NDP . . . C 3 7.596 -14.672 21.363 1 91.45 ? C4D NDP 901 A 1 HETATM 30 O O4D NDP . . . C 3 6.338 -15.319 21.55 1 91.3 ? O4D NDP 901 A 1 HETATM 31 C C3D NDP . . . C 3 8.693 -15.766 21.318 1 91.44 ? C3D NDP 901 A 1 HETATM 32 O O3D NDP . . . C 3 9.162 -16.212 22.553 1 91.31 ? O3D NDP 901 A 1 HETATM 33 C C2D NDP . . . C 3 7.916 -16.911 20.793 1 91.37 ? C2D NDP 901 A 1 HETATM 34 O O2D NDP . . . C 3 8.404 -18.202 21.014 1 88.73 ? O2D NDP 901 A 1 HETATM 35 C C1D NDP . . . C 3 6.618 -16.686 21.516 1 92.51 ? C1D NDP 901 A 1 HETATM 36 N N1N NDP . . . C 3 5.47 -17.367 20.794 1 93.72 ? N1N NDP 901 A 1 HETATM 37 C C2N NDP . . . C 3 5.023 -17.028 19.46 1 94.57 ? C2N NDP 901 A 1 HETATM 38 C C3N NDP . . . C 3 3.993 -17.62 18.813 1 94.22 ? C3N NDP 901 A 1 HETATM 39 C C7N NDP . . . C 3 3.44 -17.348 17.429 1 93.53 ? C7N NDP 901 A 1 HETATM 40 O O7N NDP . . . C 3 2.308 -17.741 17.078 1 91.94 ? O7N NDP 901 A 1 HETATM 41 N N7N NDP . . . C 3 4.179 -16.627 16.542 1 94.07 ? N7N NDP 901 A 1 HETATM 42 C C4N NDP . . . C 3 3.151 -18.464 19.73 1 94.84 ? C4N NDP 901 A 1 HETATM 43 C C5N NDP . . . C 3 3.778 -19.05 20.953 1 93.64 ? C5N NDP 901 A 1 HETATM 44 C C6N NDP . . . C 3 4.801 -18.387 21.463 1 93.4 ? C6N NDP 901 A 1 HETATM 45 P P2B NDP . . . C 3 14.236 -13.186 12.173 1 99.02 ? P2B NDP 901 A 1 HETATM 46 O O1X NDP . . . C 3 13.316 -12.349 11.288 1 99.88 ? O1X NDP 901 A 1 HETATM 47 O O2X NDP . . . C 3 13.914 -14.658 12.035 1 99.85 ? O2X NDP 901 A 1 HETATM 48 O O3X NDP . . . C 3 15.721 -12.92 12.005 1 98.95 ? O3X NDP 901 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 1010 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 48 #