data_1KCB # _model_server_result.job_id r3oISyGC8_rxTHLMKt-13Q _model_server_result.datetime_utc '2024-10-10 06:21:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kcb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":351}' # _entry.id 1KCB # _exptl.entry_id 1KCB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KCB _cell.length_a 98.16 _cell.length_b 98.16 _cell.length_c 98.16 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KCB _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 95 A HIS 95 1_555 B CU CU . A CU 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 C CU CU . A CU 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc3 A NE2 HIS 135 A HIS 135 1_555 C CU CU . A CU 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc4 A SG CYS 136 A CYS 136 1_555 B CU CU . A CU 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc5 A ND1 HIS 145 A HIS 145 1_555 B CU CU . A CU 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc6 A SD MET 150 A MET 150 1_555 B CU CU . A CU 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc7 A OE1 GLU 257 A GLU 257 9_555 C CU CU . A CU 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc8 A OE2 GLU 257 A GLU 257 9_555 C CU CU . A CU 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc9 A NE2 HIS 306 A HIS 306 9_555 C CU CU . A CU 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1KCB _atom_sites.fract_transf_matrix[1][1] 0.010187 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010187 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010187 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 351 351 CU CU . C 2 CU A 1 352 352 CU CU . D 3 HOH A 1 401 401 HOH OH2 . D 3 HOH A 2 402 402 HOH OH2 . D 3 HOH A 3 403 403 HOH OH2 . D 3 HOH A 4 404 404 HOH OH2 . D 3 HOH A 5 405 405 HOH OH2 . D 3 HOH A 6 406 406 HOH OH2 . D 3 HOH A 7 407 407 HOH OH2 . D 3 HOH A 8 408 408 HOH OH2 . D 3 HOH A 9 409 409 HOH OH2 . D 3 HOH A 10 410 410 HOH OH2 . D 3 HOH A 11 411 411 HOH OH2 . D 3 HOH A 12 412 412 HOH OH2 . D 3 HOH A 13 413 413 HOH OH2 . D 3 HOH A 14 414 414 HOH OH2 . D 3 HOH A 15 415 415 HOH OH2 . D 3 HOH A 16 416 416 HOH OH2 . D 3 HOH A 17 417 417 HOH OH2 . D 3 HOH A 18 418 418 HOH OH2 . D 3 HOH A 19 419 419 HOH OH2 . D 3 HOH A 20 420 420 HOH OH2 . D 3 HOH A 21 421 421 HOH OH2 . D 3 HOH A 22 422 422 HOH OH2 . D 3 HOH A 23 423 423 HOH OH2 . D 3 HOH A 24 424 424 HOH OH2 . D 3 HOH A 25 425 425 HOH OH2 . D 3 HOH A 26 426 426 HOH OH2 . D 3 HOH A 27 427 427 HOH OH2 . D 3 HOH A 28 428 428 HOH OH2 . D 3 HOH A 29 429 429 HOH OH2 . D 3 HOH A 30 430 430 HOH OH2 . D 3 HOH A 31 431 431 HOH OH2 . D 3 HOH A 32 432 432 HOH OH2 . D 3 HOH A 33 433 433 HOH OH2 . D 3 HOH A 34 434 434 HOH OH2 . D 3 HOH A 35 435 435 HOH OH2 . D 3 HOH A 36 436 436 HOH OH2 . D 3 HOH A 37 437 437 HOH OH2 . D 3 HOH A 38 438 438 HOH OH2 . D 3 HOH A 39 439 439 HOH OH2 . D 3 HOH A 40 440 440 HOH OH2 . D 3 HOH A 41 441 441 HOH OH2 . D 3 HOH A 42 442 442 HOH OH2 . D 3 HOH A 43 443 443 HOH OH2 . D 3 HOH A 44 444 444 HOH OH2 . D 3 HOH A 45 445 445 HOH OH2 . D 3 HOH A 46 446 446 HOH OH2 . D 3 HOH A 47 447 447 HOH OH2 . D 3 HOH A 48 448 448 HOH OH2 . D 3 HOH A 49 449 449 HOH OH2 . D 3 HOH A 50 450 450 HOH OH2 . D 3 HOH A 51 451 451 HOH OH2 . D 3 HOH A 52 452 452 HOH OH2 . D 3 HOH A 53 454 454 HOH OH2 . D 3 HOH A 54 456 456 HOH OH2 . D 3 HOH A 55 457 457 HOH OH2 . D 3 HOH A 56 459 459 HOH OH2 . D 3 HOH A 57 461 461 HOH OH2 . D 3 HOH A 58 462 462 HOH OH2 . D 3 HOH A 59 463 463 HOH OH2 . D 3 HOH A 60 464 464 HOH OH2 . D 3 HOH A 61 466 466 HOH OH2 . D 3 HOH A 62 467 467 HOH OH2 . D 3 HOH A 63 468 468 HOH OH2 . D 3 HOH A 64 471 471 HOH OH2 . D 3 HOH A 65 472 472 HOH OH2 . D 3 HOH A 66 473 473 HOH OH2 . D 3 HOH A 67 474 474 HOH OH2 . D 3 HOH A 68 477 477 HOH OH2 . D 3 HOH A 69 478 478 HOH OH2 . D 3 HOH A 70 480 480 HOH OH2 . D 3 HOH A 71 501 501 HOH OH2 . D 3 HOH A 72 502 502 HOH OH2 . D 3 HOH A 73 503 503 HOH OH2 . D 3 HOH A 74 504 504 HOH OH2 . D 3 HOH A 75 505 505 HOH OH2 . D 3 HOH A 76 506 506 HOH OH2 . D 3 HOH A 77 507 507 HOH OH2 . D 3 HOH A 78 508 508 HOH OH2 . D 3 HOH A 79 509 509 HOH OH2 . D 3 HOH A 80 510 510 HOH OH2 . D 3 HOH A 81 511 511 HOH OH2 . D 3 HOH A 82 512 512 HOH OH2 . D 3 HOH A 83 513 513 HOH OH2 . D 3 HOH A 84 514 514 HOH OH2 . D 3 HOH A 85 515 515 HOH OH2 . D 3 HOH A 86 516 516 HOH OH2 . D 3 HOH A 87 517 517 HOH OH2 . D 3 HOH A 88 518 518 HOH OH2 . D 3 HOH A 89 519 519 HOH OH2 . D 3 HOH A 90 520 520 HOH OH2 . D 3 HOH A 91 521 521 HOH OH2 . D 3 HOH A 92 522 522 HOH OH2 . D 3 HOH A 93 523 523 HOH OH2 . D 3 HOH A 94 524 524 HOH OH2 . D 3 HOH A 95 525 525 HOH OH2 . D 3 HOH A 96 526 526 HOH OH2 . D 3 HOH A 97 527 527 HOH OH2 . D 3 HOH A 98 528 528 HOH OH2 . D 3 HOH A 99 529 529 HOH OH2 . D 3 HOH A 100 530 530 HOH OH2 . D 3 HOH A 101 531 531 HOH OH2 . D 3 HOH A 102 532 532 HOH OH2 . D 3 HOH A 103 533 533 HOH OH2 . D 3 HOH A 104 534 534 HOH OH2 . D 3 HOH A 105 535 535 HOH OH2 . D 3 HOH A 106 536 536 HOH OH2 . D 3 HOH A 107 537 537 HOH OH2 . D 3 HOH A 108 538 538 HOH OH2 . D 3 HOH A 109 540 540 HOH OH2 . D 3 HOH A 110 541 541 HOH OH2 . D 3 HOH A 111 601 601 HOH OH2 . D 3 HOH A 112 602 602 HOH OH2 . D 3 HOH A 113 603 603 HOH OH2 . D 3 HOH A 114 604 604 HOH OH2 . D 3 HOH A 115 605 605 HOH OH2 . D 3 HOH A 116 606 606 HOH OH2 . D 3 HOH A 117 607 607 HOH OH2 . D 3 HOH A 118 608 608 HOH OH2 . D 3 HOH A 119 609 609 HOH OH2 . D 3 HOH A 120 610 610 HOH OH2 . D 3 HOH A 121 611 611 HOH OH2 . D 3 HOH A 122 612 612 HOH OH2 . D 3 HOH A 123 613 613 HOH OH2 . D 3 HOH A 124 614 614 HOH OH2 . D 3 HOH A 125 615 615 HOH OH2 . D 3 HOH A 126 616 616 HOH OH2 . D 3 HOH A 127 617 617 HOH OH2 . D 3 HOH A 128 618 618 HOH OH2 . D 3 HOH A 129 619 619 HOH OH2 . D 3 HOH A 130 621 621 HOH OH2 . D 3 HOH A 131 622 622 HOH OH2 . D 3 HOH A 132 624 624 HOH OH2 . D 3 HOH A 133 625 625 HOH OH2 . D 3 HOH A 134 626 626 HOH OH2 . D 3 HOH A 135 627 627 HOH OH2 . D 3 HOH A 136 629 629 HOH OH2 . D 3 HOH A 137 630 630 HOH OH2 . D 3 HOH A 138 631 631 HOH OH2 . D 3 HOH A 139 632 632 HOH OH2 . D 3 HOH A 140 633 633 HOH OH2 . D 3 HOH A 141 634 634 HOH OH2 . D 3 HOH A 142 636 636 HOH OH2 . D 3 HOH A 143 637 637 HOH OH2 . D 3 HOH A 144 638 638 HOH OH2 . D 3 HOH A 145 639 639 HOH OH2 . D 3 HOH A 146 640 640 HOH OH2 . D 3 HOH A 147 645 645 HOH OH2 . D 3 HOH A 148 646 646 HOH OH2 . D 3 HOH A 149 648 648 HOH OH2 . D 3 HOH A 150 650 650 HOH OH2 . D 3 HOH A 151 651 651 HOH OH2 . D 3 HOH A 152 653 653 HOH OH2 . D 3 HOH A 153 654 654 HOH OH2 . D 3 HOH A 154 655 655 HOH OH2 . D 3 HOH A 155 656 656 HOH OH2 . D 3 HOH A 156 657 657 HOH OH2 . D 3 HOH A 157 701 701 HOH OH2 . D 3 HOH A 158 702 702 HOH OH2 . D 3 HOH A 159 703 703 HOH OH2 . D 3 HOH A 160 704 704 HOH OH2 . D 3 HOH A 161 707 707 HOH OH2 . D 3 HOH A 162 708 708 HOH OH2 . D 3 HOH A 163 710 710 HOH OH2 . D 3 HOH A 164 715 715 HOH OH2 . D 3 HOH A 165 716 716 HOH OH2 . D 3 HOH A 166 727 727 HOH OH2 . D 3 HOH A 167 737 737 HOH OH2 . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 28.864 _atom_site.Cartn_y -6.55 _atom_site.Cartn_z 8.351 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 351 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #