data_1KCQ # _model_server_result.job_id REP4akigl9MWm4zi7jBKFQ _model_server_result.datetime_utc '2024-11-22 14:41:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kcq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":262}' # _entry.id 1KCQ # _exptl.entry_id 1KCQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 121.19 _cell.angle_gamma 90 _cell.entry_id 1KCQ _cell.length_a 96.968 _cell.length_b 26.525 _cell.length_c 50.294 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KCQ _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -26.046142 0 43.024237 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 A CYS 188 1_555 A SG CYS 44 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc1 A OE1 GLU 18 A GLU 175 1_555 D CD CD . A CD 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc2 A OE2 GLU 18 A GLU 175 1_555 D CD CD . A CD 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc3 A OE1 GLU 18 A GLU 175 2_556 D CD CD . A CD 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc4 A OE2 GLU 18 A GLU 175 2_556 D CD CD . A CD 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc5 A O GLY 29 A GLY 186 1_555 C CD CD . A CD 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc6 A OD1 ASP 30 A ASP 187 1_555 C CD CD . A CD 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc7 A OE2 GLU 52 A GLU 209 1_555 C CD CD . A CD 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc8 A OE1 GLU 52 A GLU 209 1_555 C CD CD . A CD 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc9 A ND1 HIS 75 A HIS 232 1_555 E CD CD . A CD 265 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.59 ? metalc ? metalc10 A ND1 HIS 75 A HIS 232 1_555 E CD CD . A CD 265 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.327 ? metalc ? metalc11 A OE2 GLU 101 A GLU 258 1_555 B CD CD . A CD 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc12 A OE1 GLU 101 A GLU 258 1_555 B CD CD . A CD 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc13 A OE1 GLU 101 A GLU 258 2_555 B CD CD . A CD 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc14 A OE2 GLU 101 A GLU 258 2_555 B CD CD . A CD 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc15 A OD2 ASP 102 A ASP 259 1_555 C CD CD . A CD 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc16 A OD1 ASP 102 A ASP 259 1_555 C CD CD . A CD 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc17 B CD CD . A CD 262 1_555 F O HOH . A HOH 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc18 B CD CD . A CD 262 1_555 F O HOH . A HOH 273 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc19 B CD CD . A CD 262 1_555 F O HOH . A HOH 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc20 C CD CD . A CD 263 1_555 F O HOH . A HOH 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc21 C CD CD . A CD 263 1_555 F O HOH . A HOH 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc22 D CD CD . A CD 264 1_555 F O HOH . A HOH 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc23 D CD CD . A CD 264 1_555 F O HOH . A HOH 270 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc24 E CD CD . A CD 265 1_555 F O HOH . A HOH 355 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc25 E CD CD . A CD 265 1_555 F O HOH . A HOH 355 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc26 E CD CD . A CD 265 1_555 F O HOH . A HOH 360 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc27 E CD CD . A CD 265 1_555 F O HOH . A HOH 374 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc28 E CD CD . A CD 265 1_555 F O HOH . A HOH 374 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.798 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1KCQ _atom_sites.fract_transf_matrix[1][1] 0.01031 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00624 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0377 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 262 262 CD CD . C 2 CD A 1 263 263 CD CD . D 2 CD A 1 264 264 CD CD . E 2 CD A 1 265 265 CD CD . F 3 HOH A 1 266 266 HOH HOH . F 3 HOH A 2 267 267 HOH HOH . F 3 HOH A 3 268 268 HOH HOH . F 3 HOH A 4 269 269 HOH HOH . F 3 HOH A 5 270 270 HOH HOH . F 3 HOH A 6 271 271 HOH HOH . F 3 HOH A 7 272 272 HOH HOH . F 3 HOH A 8 273 273 HOH HOH . F 3 HOH A 9 274 274 HOH HOH . F 3 HOH A 10 275 275 HOH HOH . F 3 HOH A 11 276 276 HOH HOH . F 3 HOH A 12 277 277 HOH HOH . F 3 HOH A 13 278 278 HOH HOH . F 3 HOH A 14 279 279 HOH HOH . F 3 HOH A 15 280 280 HOH HOH . F 3 HOH A 16 281 281 HOH HOH . F 3 HOH A 17 282 282 HOH HOH . F 3 HOH A 18 283 283 HOH HOH . F 3 HOH A 19 284 284 HOH HOH . F 3 HOH A 20 285 285 HOH HOH . F 3 HOH A 21 286 286 HOH HOH . F 3 HOH A 22 287 287 HOH HOH . F 3 HOH A 23 288 288 HOH HOH . F 3 HOH A 24 289 289 HOH HOH . F 3 HOH A 25 290 290 HOH HOH . F 3 HOH A 26 291 291 HOH HOH . F 3 HOH A 27 292 292 HOH HOH . F 3 HOH A 28 293 293 HOH HOH . F 3 HOH A 29 294 294 HOH HOH . F 3 HOH A 30 295 295 HOH HOH . F 3 HOH A 31 296 296 HOH HOH . F 3 HOH A 32 297 297 HOH HOH . F 3 HOH A 33 298 298 HOH HOH . F 3 HOH A 34 299 299 HOH HOH . F 3 HOH A 35 300 300 HOH HOH . F 3 HOH A 36 301 301 HOH HOH . F 3 HOH A 37 302 302 HOH HOH . F 3 HOH A 38 303 303 HOH HOH . F 3 HOH A 39 304 304 HOH HOH . F 3 HOH A 40 305 305 HOH HOH . F 3 HOH A 41 306 306 HOH HOH . F 3 HOH A 42 307 307 HOH HOH . F 3 HOH A 43 308 308 HOH HOH . F 3 HOH A 44 309 309 HOH HOH . F 3 HOH A 45 310 310 HOH HOH . F 3 HOH A 46 311 311 HOH HOH . F 3 HOH A 47 312 312 HOH HOH . F 3 HOH A 48 313 313 HOH HOH . F 3 HOH A 49 314 314 HOH HOH . F 3 HOH A 50 315 315 HOH HOH . F 3 HOH A 51 316 316 HOH HOH . F 3 HOH A 52 317 317 HOH HOH . F 3 HOH A 53 318 318 HOH HOH . F 3 HOH A 54 319 319 HOH HOH . F 3 HOH A 55 320 320 HOH HOH . F 3 HOH A 56 321 321 HOH HOH . F 3 HOH A 57 322 322 HOH HOH . F 3 HOH A 58 323 323 HOH HOH . F 3 HOH A 59 324 324 HOH HOH . F 3 HOH A 60 325 325 HOH HOH . F 3 HOH A 61 326 326 HOH HOH . F 3 HOH A 62 327 327 HOH HOH . F 3 HOH A 63 328 328 HOH HOH . F 3 HOH A 64 329 329 HOH HOH . F 3 HOH A 65 330 330 HOH HOH . F 3 HOH A 66 331 331 HOH HOH . F 3 HOH A 67 332 332 HOH HOH . F 3 HOH A 68 333 333 HOH HOH . F 3 HOH A 69 334 334 HOH HOH . F 3 HOH A 70 335 335 HOH HOH . F 3 HOH A 71 336 336 HOH HOH . F 3 HOH A 72 337 337 HOH HOH . F 3 HOH A 73 338 338 HOH HOH . F 3 HOH A 74 339 339 HOH HOH . F 3 HOH A 75 340 340 HOH HOH . F 3 HOH A 76 341 341 HOH HOH . F 3 HOH A 77 342 342 HOH HOH . F 3 HOH A 78 343 343 HOH HOH . F 3 HOH A 79 344 344 HOH HOH . F 3 HOH A 80 345 345 HOH HOH . F 3 HOH A 81 346 346 HOH HOH . F 3 HOH A 82 347 347 HOH HOH . F 3 HOH A 83 348 348 HOH HOH . F 3 HOH A 84 349 349 HOH HOH . F 3 HOH A 85 350 350 HOH HOH . F 3 HOH A 86 351 351 HOH HOH . F 3 HOH A 87 352 352 HOH HOH . F 3 HOH A 88 353 353 HOH HOH . F 3 HOH A 89 354 354 HOH HOH . F 3 HOH A 90 355 355 HOH HOH . F 3 HOH A 91 356 356 HOH HOH . F 3 HOH A 92 357 357 HOH HOH . F 3 HOH A 93 358 358 HOH HOH . F 3 HOH A 94 359 359 HOH HOH . F 3 HOH A 95 360 360 HOH HOH . F 3 HOH A 96 361 361 HOH HOH . F 3 HOH A 97 362 362 HOH HOH . F 3 HOH A 98 363 363 HOH HOH . F 3 HOH A 99 364 364 HOH HOH . F 3 HOH A 100 365 365 HOH HOH . F 3 HOH A 101 366 366 HOH HOH . F 3 HOH A 102 367 367 HOH HOH . F 3 HOH A 103 368 368 HOH HOH . F 3 HOH A 104 369 369 HOH HOH . F 3 HOH A 105 370 370 HOH HOH . F 3 HOH A 106 371 371 HOH HOH . F 3 HOH A 107 372 372 HOH HOH . F 3 HOH A 108 373 373 HOH HOH . F 3 HOH A 109 374 374 HOH HOH . F 3 HOH A 110 375 375 HOH HOH . F 3 HOH A 111 376 376 HOH HOH . F 3 HOH A 112 377 377 HOH HOH . F 3 HOH A 113 378 378 HOH HOH . F 3 HOH A 114 379 379 HOH HOH . F 3 HOH A 115 380 380 HOH HOH . F 3 HOH A 116 381 381 HOH HOH . F 3 HOH A 117 382 382 HOH HOH . F 3 HOH A 118 383 383 HOH HOH . F 3 HOH A 119 384 384 HOH HOH . F 3 HOH A 120 385 385 HOH HOH . F 3 HOH A 121 386 386 HOH HOH . F 3 HOH A 122 387 387 HOH HOH . F 3 HOH A 123 388 388 HOH HOH . F 3 HOH A 124 389 389 HOH HOH . F 3 HOH A 125 390 390 HOH HOH . F 3 HOH A 126 391 391 HOH HOH . F 3 HOH A 127 392 392 HOH HOH . F 3 HOH A 128 393 393 HOH HOH . F 3 HOH A 129 394 394 HOH HOH . F 3 HOH A 130 395 395 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.392 _atom_site.Cartn_y 3.557 _atom_site.Cartn_z 0.089 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 18.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 262 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #