data_1KCW # _model_server_result.job_id yybvJxyjutM05VYtDSC-9Q _model_server_result.datetime_utc '2024-12-21 15:44:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kcw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1047}' # _entry.id 1KCW # _exptl.entry_id 1KCW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1KCW _cell.length_a 213.92 _cell.length_b 213.92 _cell.length_c 85.63 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 155 A CYS 155 1_555 A SG CYS 181 A CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf2 A SG CYS 257 A CYS 257 1_555 A SG CYS 338 A CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 515 A CYS 515 1_555 A SG CYS 541 A CYS 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf4 A SG CYS 618 A CYS 618 1_555 A SG CYS 699 A CYS 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 A SG CYS 855 A CYS 855 1_555 A SG CYS 881 A CYS 881 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? covale ? covale1 A ND2 ASN 119 A ASN 119 1_555 B C1 NAG . A NAG 1047 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale2 A ND2 ASN 743 A ASN 743 1_555 C C1 NAG . A NAG 1048 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? metalc ? metalc1 A NE2 HIS 101 A HIS 101 1_555 G CU CU . A CU 1052 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc2 A NE2 HIS 103 A HIS 103 1_555 F CU CU . A CU 1051 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc3 A NE2 HIS 161 A HIS 161 1_555 F CU CU . A CU 1051 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc4 A NE2 HIS 163 A HIS 163 1_555 E CU CU . A CU 1050 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc5 A ND1 HIS 276 A HIS 276 1_555 D CU CU . A CU 1049 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc6 A SG CYS 319 A CYS 319 1_555 D CU CU . A CU 1049 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc7 A ND1 HIS 324 A HIS 324 1_555 D CU CU . A CU 1049 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc8 A NE2 HIS 602 A HIS 602 1_555 I CU CU . A CU 1054 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc9 A ND1 HIS 637 A HIS 637 1_555 H CU CU . A CU 1053 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc10 A SG CYS 680 A CYS 680 1_555 H CU CU . A CU 1053 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc11 A OD1 ASP 684 A ASP 684 1_555 I CU CU . A CU 1054 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc12 A OD2 ASP 684 A ASP 684 1_555 I CU CU . A CU 1054 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc13 A ND1 HIS 685 A HIS 685 1_555 H CU CU . A CU 1053 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc14 A NE2 HIS 940 A HIS 940 1_555 K CU CU . A CU 1056 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc15 A ND1 HIS 975 A HIS 975 1_555 J CU CU . A CU 1055 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc16 A NE2 HIS 978 A HIS 978 1_555 G CU CU . A CU 1052 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc17 A NE2 HIS 980 A HIS 980 1_555 E CU CU . A CU 1050 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc18 A NE2 HIS 980 A HIS 980 1_555 G CU CU . A CU 1052 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc19 A NE2 HIS 1020 A HIS 1020 1_555 E CU CU . A CU 1050 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc20 A SG CYS 1021 A CYS 1021 1_555 J CU CU . A CU 1055 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc21 A NE2 HIS 1022 A HIS 1022 1_555 F CU CU . A CU 1051 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc22 A OD2 ASP 1025 A ASP 1025 1_555 K CU CU . A CU 1056 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc23 A ND1 HIS 1026 A HIS 1026 1_555 J CU CU . A CU 1055 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc24 E CU CU . A CU 1050 1_555 L O O . A O 1057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? metalc ? metalc25 F CU CU . A CU 1051 1_555 L O O . A O 1057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? metalc ? metalc26 G CU CU . A CU 1052 1_555 M O O . A O 1058 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1KCW _atom_sites.fract_transf_matrix[1][1] 0.004675 _atom_sites.fract_transf_matrix[1][2] 0.002699 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005398 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011678 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 1047 119 NAG NAG . C 2 NAG A 1 1048 743 NAG NAG . D 3 CU A 1 1049 21 CU CU . E 3 CU A 1 1050 31 CU CU . F 3 CU A 1 1051 32 CU CU . G 3 CU A 1 1052 34 CU CU . H 3 CU A 1 1053 41 CU CU . I 3 CU A 1 1054 42 CU CU . J 3 CU A 1 1055 61 CU CU . K 3 CU A 1 1056 62 CU CU . L 4 O A 1 1057 33 O O . M 4 O A 1 1058 35 O O . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 122.287 7.471 18.037 1 143.42 ? C1 NAG 1047 A 1 HETATM 2 C C2 NAG . . . B 2 121.446 8.79 18.136 1 143.42 ? C2 NAG 1047 A 1 HETATM 3 C C3 NAG . . . B 2 121.244 9.336 19.552 1 143.42 ? C3 NAG 1047 A 1 HETATM 4 C C4 NAG . . . B 2 121.857 8.417 20.597 1 143.42 ? C4 NAG 1047 A 1 HETATM 5 C C5 NAG . . . B 2 121.498 6.973 20.312 1 143.42 ? C5 NAG 1047 A 1 HETATM 6 C C6 NAG . . . B 2 120.022 6.614 20.258 1 143.42 ? C6 NAG 1047 A 1 HETATM 7 C C7 NAG . . . B 2 121.646 10.398 16.295 1 143.42 ? C7 NAG 1047 A 1 HETATM 8 C C8 NAG . . . B 2 122.523 11.411 15.593 1 143.42 ? C8 NAG 1047 A 1 HETATM 9 N N2 NAG . . . B 2 122.162 9.797 17.362 1 143.42 ? N2 NAG 1047 A 1 HETATM 10 O O3 NAG . . . B 2 119.841 9.438 19.815 1 143.42 ? O3 NAG 1047 A 1 HETATM 11 O O4 NAG . . . B 2 123.277 8.546 20.601 1 143.42 ? O4 NAG 1047 A 1 HETATM 12 O O5 NAG . . . B 2 122.085 6.5 19.097 1 143.42 ? O5 NAG 1047 A 1 HETATM 13 O O6 NAG . . . B 2 119.538 6.462 18.926 1 143.42 ? O6 NAG 1047 A 1 HETATM 14 O O7 NAG . . . B 2 120.561 10.101 15.781 1 143.42 ? O7 NAG 1047 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #