data_1KDK # _model_server_result.job_id 62m9VwQS9ivsYRCgPpwKbw _model_server_result.datetime_utc '2025-06-19 05:01:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kdk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 1KDK # _exptl.entry_id 1KDK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.44 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-ALPHA-DIHYDROTESTOSTERONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1KDK _cell.length_a 103.72 _cell.length_b 103.72 _cell.length_c 85.76 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KDK _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 85.76 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 153 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 164 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 177 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 188 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.044 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H30 O2' _chem_comp.formula_weight 290.44 _chem_comp.id DHT _chem_comp.mon_nstd_flag . _chem_comp.name 5-ALPHA-DIHYDROTESTOSTERONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DHT sing 83 n n C1 C10 DHT sing 84 n n C1 H11 DHT sing 85 n n C1 H12 DHT sing 86 n n C2 C3 DHT sing 87 n n C2 H21 DHT sing 88 n n C2 H22 DHT sing 89 n n C3 O3 DHT doub 90 n n C3 C4 DHT sing 91 n n C4 C5 DHT sing 92 n n C4 H41 DHT sing 93 n n C4 H42 DHT sing 94 n n C5 C6 DHT sing 95 n n C5 C10 DHT sing 96 n n C5 H5 DHT sing 97 n n C6 C7 DHT sing 98 n n C6 H61 DHT sing 99 n n C6 H62 DHT sing 100 n n C7 C8 DHT sing 101 n n C7 H71 DHT sing 102 n n C7 H72 DHT sing 103 n n C8 C9 DHT sing 104 n n C8 C14 DHT sing 105 n n C8 H8 DHT sing 106 n n C9 C10 DHT sing 107 n n C9 C11 DHT sing 108 n n C9 H9 DHT sing 109 n n C10 C19 DHT sing 110 n n C11 C12 DHT sing 111 n n C11 H111 DHT sing 112 n n C11 H112 DHT sing 113 n n C12 C13 DHT sing 114 n n C12 H121 DHT sing 115 n n C12 H122 DHT sing 116 n n C13 C14 DHT sing 117 n n C13 C17 DHT sing 118 n n C13 C18 DHT sing 119 n n C14 C15 DHT sing 120 n n C14 H14 DHT sing 121 n n C15 C16 DHT sing 122 n n C15 H151 DHT sing 123 n n C15 H152 DHT sing 124 n n C16 C17 DHT sing 125 n n C16 H161 DHT sing 126 n n C16 H162 DHT sing 127 n n C17 O17 DHT sing 128 n n C17 H17 DHT sing 129 n n O17 HO7 DHT sing 130 n n C18 H181 DHT sing 131 n n C18 H182 DHT sing 132 n n C18 H183 DHT sing 133 n n C19 H191 DHT sing 134 n n C19 H192 DHT sing 135 n n C19 H193 DHT sing 136 n n # _atom_sites.entry_id 1KDK _atom_sites.fract_transf_matrix[1][1] 0.009641 _atom_sites.fract_transf_matrix[1][2] 0.005566 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011133 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01166 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DHT A 1 301 301 DHT DHT . C 3 HOH A 1 302 1 HOH HOH . C 3 HOH A 2 303 2 HOH HOH . C 3 HOH A 3 304 3 HOH HOH . C 3 HOH A 4 305 4 HOH HOH . C 3 HOH A 5 306 5 HOH HOH . C 3 HOH A 6 307 6 HOH HOH . C 3 HOH A 7 308 7 HOH HOH . C 3 HOH A 8 309 8 HOH HOH . C 3 HOH A 9 310 9 HOH HOH . C 3 HOH A 10 311 10 HOH HOH . C 3 HOH A 11 312 11 HOH HOH . C 3 HOH A 12 313 12 HOH HOH . C 3 HOH A 13 314 13 HOH HOH . C 3 HOH A 14 315 14 HOH HOH . C 3 HOH A 15 316 15 HOH HOH . C 3 HOH A 16 317 16 HOH HOH . C 3 HOH A 17 318 17 HOH HOH . C 3 HOH A 18 319 18 HOH HOH . C 3 HOH A 19 320 19 HOH HOH . C 3 HOH A 20 321 20 HOH HOH . C 3 HOH A 21 322 21 HOH HOH . C 3 HOH A 22 323 22 HOH HOH . C 3 HOH A 23 324 23 HOH HOH . C 3 HOH A 24 325 24 HOH HOH . C 3 HOH A 25 326 25 HOH HOH . C 3 HOH A 26 327 26 HOH HOH . C 3 HOH A 27 328 27 HOH HOH . C 3 HOH A 28 329 28 HOH HOH . C 3 HOH A 29 330 29 HOH HOH . C 3 HOH A 30 331 30 HOH HOH . C 3 HOH A 31 332 31 HOH HOH . C 3 HOH A 32 333 32 HOH HOH . C 3 HOH A 33 334 33 HOH HOH . C 3 HOH A 34 335 34 HOH HOH . C 3 HOH A 35 336 35 HOH HOH . C 3 HOH A 36 337 36 HOH HOH . C 3 HOH A 37 338 37 HOH HOH . C 3 HOH A 38 339 38 HOH HOH . C 3 HOH A 39 340 39 HOH HOH . C 3 HOH A 40 341 40 HOH HOH . C 3 HOH A 41 342 41 HOH HOH . C 3 HOH A 42 343 42 HOH HOH . C 3 HOH A 43 344 43 HOH HOH . C 3 HOH A 44 345 44 HOH HOH . C 3 HOH A 45 346 45 HOH HOH . C 3 HOH A 46 347 46 HOH HOH . C 3 HOH A 47 348 47 HOH HOH . C 3 HOH A 48 349 48 HOH HOH . C 3 HOH A 49 350 49 HOH HOH . C 3 HOH A 50 351 50 HOH HOH . C 3 HOH A 51 352 51 HOH HOH . C 3 HOH A 52 353 52 HOH HOH . C 3 HOH A 53 354 53 HOH HOH . C 3 HOH A 54 355 54 HOH HOH . C 3 HOH A 55 356 55 HOH HOH . C 3 HOH A 56 357 56 HOH HOH . C 3 HOH A 57 358 57 HOH HOH . C 3 HOH A 58 359 58 HOH HOH . C 3 HOH A 59 360 59 HOH HOH . C 3 HOH A 60 361 60 HOH HOH . C 3 HOH A 61 362 61 HOH HOH . C 3 HOH A 62 363 62 HOH HOH . C 3 HOH A 63 364 63 HOH HOH . C 3 HOH A 64 365 64 HOH HOH . C 3 HOH A 65 366 65 HOH HOH . C 3 HOH A 66 367 66 HOH HOH . C 3 HOH A 67 368 67 HOH HOH . C 3 HOH A 68 369 68 HOH HOH . C 3 HOH A 69 370 69 HOH HOH . C 3 HOH A 70 371 70 HOH HOH . C 3 HOH A 71 372 71 HOH HOH . C 3 HOH A 72 373 72 HOH HOH . C 3 HOH A 73 374 73 HOH HOH . C 3 HOH A 74 375 74 HOH HOH . C 3 HOH A 75 376 75 HOH HOH . C 3 HOH A 76 377 76 HOH HOH . C 3 HOH A 77 378 77 HOH HOH . C 3 HOH A 78 379 78 HOH HOH . C 3 HOH A 79 380 79 HOH HOH . C 3 HOH A 80 381 80 HOH HOH . C 3 HOH A 81 382 81 HOH HOH . C 3 HOH A 82 383 82 HOH HOH . C 3 HOH A 83 384 83 HOH HOH . C 3 HOH A 84 385 84 HOH HOH . C 3 HOH A 85 386 85 HOH HOH . C 3 HOH A 86 387 86 HOH HOH . C 3 HOH A 87 388 87 HOH HOH . C 3 HOH A 88 389 88 HOH HOH . C 3 HOH A 89 390 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DHT . . . B 2 24.052 10.027 31.573 1 20.02 ? C1 DHT 301 A 1 HETATM 2 C C2 DHT . . . B 2 25.577 10.203 31.468 1 19.07 ? C2 DHT 301 A 1 HETATM 3 C C3 DHT . . . B 2 26.014 11.625 31.666 1 22.44 ? C3 DHT 301 A 1 HETATM 4 O O3 DHT . . . B 2 26.845 12.208 30.96 1 21.95 ? O3 DHT 301 A 1 HETATM 5 C C4 DHT . . . B 2 25.343 12.387 32.759 1 16.85 ? C4 DHT 301 A 1 HETATM 6 C C5 DHT . . . B 2 23.856 12.146 32.914 1 17 ? C5 DHT 301 A 1 HETATM 7 C C6 DHT . . . B 2 23.253 12.8 34.171 1 16.43 ? C6 DHT 301 A 1 HETATM 8 C C7 DHT . . . B 2 21.723 12.771 34.07 1 16.54 ? C7 DHT 301 A 1 HETATM 9 C C8 DHT . . . B 2 21.24 11.289 34.047 1 16.24 ? C8 DHT 301 A 1 HETATM 10 C C9 DHT . . . B 2 21.895 10.578 32.833 1 17.77 ? C9 DHT 301 A 1 HETATM 11 C C10 DHT . . . B 2 23.426 10.659 32.833 1 19.01 ? C10 DHT 301 A 1 HETATM 12 C C11 DHT . . . B 2 21.401 9.098 32.714 1 19.59 ? C11 DHT 301 A 1 HETATM 13 C C12 DHT . . . B 2 19.874 9.005 32.701 1 19.42 ? C12 DHT 301 A 1 HETATM 14 C C13 DHT . . . B 2 19.226 9.766 33.859 1 20.83 ? C13 DHT 301 A 1 HETATM 15 C C14 DHT . . . B 2 19.743 11.223 33.827 1 18.33 ? C14 DHT 301 A 1 HETATM 16 C C15 DHT . . . B 2 18.841 11.942 34.851 1 18.79 ? C15 DHT 301 A 1 HETATM 17 C C16 DHT . . . B 2 17.455 11.271 34.693 1 19.45 ? C16 DHT 301 A 1 HETATM 18 C C17 DHT . . . B 2 17.756 10.095 33.741 1 18.49 ? C17 DHT 301 A 1 HETATM 19 O O17 DHT . . . B 2 16.82 9.014 33.948 1 24.42 ? O17 DHT 301 A 1 HETATM 20 C C18 DHT . . . B 2 19.561 9.016 35.164 1 20.03 ? C18 DHT 301 A 1 HETATM 21 C C19 DHT . . . B 2 24.027 9.937 34.076 1 18.84 ? C19 DHT 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #