data_1KDM
#
_model_server_result.job_id            NUDcZuFHIj6w2EybjSMBxw 
_model_server_result.datetime_utc      '2024-12-01 00:20:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1kdm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":350}' 
#
_entry.id    1KDM 
#
_exptl.entry_id    1KDM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1KDM 
_cell.length_a            52.24 
_cell.length_b            52.24 
_cell.length_c            148.53 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KDM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        95 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_565 x,-y+1,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 52.24 74.265 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 153 A CYS 164 1_555 A SG CYS 177 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc1 A OD1 ASP 39 A ASP 50 1_555 B CA CA . A CA 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? 
metalc ? metalc2 A OD2 ASP 39 A ASP 50 1_555 B CA CA . A CA 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc3 A O GLU 41 A GLU 52 1_555 B CA CA . A CA 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc4 A O ALA 149 A ALA 160 1_555 B CA CA . A CA 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc5 B CA CA . A CA 350 1_555 D O HOH . A HOH 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc6 B CA CA . A CA 350 1_555 D O HOH . A HOH 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1KDM 
_atom_sites.fract_transf_matrix[1][1]    0.019142 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019142 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006733 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 350 350 CA CA . 
C 3 DHT A 1 301 301 DHT DHT . 
D 4 HOH A 1 351 1 HOH WAT . 
D 4 HOH A 2 352 2 HOH WAT . 
D 4 HOH A 3 353 3 HOH WAT . 
D 4 HOH A 4 354 4 HOH WAT . 
D 4 HOH A 5 355 5 HOH WAT . 
D 4 HOH A 6 356 6 HOH WAT . 
D 4 HOH A 7 357 7 HOH WAT . 
D 4 HOH A 8 358 8 HOH WAT . 
D 4 HOH A 9 359 9 HOH WAT . 
D 4 HOH A 10 360 10 HOH WAT . 
D 4 HOH A 11 361 11 HOH WAT . 
D 4 HOH A 12 362 12 HOH WAT . 
D 4 HOH A 13 363 13 HOH WAT . 
D 4 HOH A 14 364 14 HOH WAT . 
D 4 HOH A 15 365 15 HOH WAT . 
D 4 HOH A 16 366 16 HOH WAT . 
D 4 HOH A 17 367 17 HOH WAT . 
D 4 HOH A 18 368 18 HOH WAT . 
D 4 HOH A 19 369 19 HOH WAT . 
D 4 HOH A 20 370 20 HOH WAT . 
D 4 HOH A 21 371 21 HOH WAT . 
D 4 HOH A 22 372 22 HOH WAT . 
D 4 HOH A 23 373 23 HOH WAT . 
D 4 HOH A 24 374 24 HOH WAT . 
D 4 HOH A 25 375 25 HOH WAT . 
D 4 HOH A 26 376 26 HOH WAT . 
D 4 HOH A 27 377 27 HOH WAT . 
D 4 HOH A 28 378 28 HOH WAT . 
D 4 HOH A 29 379 29 HOH WAT . 
D 4 HOH A 30 380 30 HOH WAT . 
D 4 HOH A 31 381 31 HOH WAT . 
D 4 HOH A 32 382 32 HOH WAT . 
D 4 HOH A 33 383 33 HOH WAT . 
D 4 HOH A 34 384 34 HOH WAT . 
D 4 HOH A 35 385 35 HOH WAT . 
D 4 HOH A 36 386 36 HOH WAT . 
D 4 HOH A 37 387 37 HOH WAT . 
D 4 HOH A 38 388 38 HOH WAT . 
D 4 HOH A 39 389 39 HOH WAT . 
D 4 HOH A 40 390 40 HOH WAT . 
D 4 HOH A 41 391 41 HOH WAT . 
D 4 HOH A 42 392 42 HOH WAT . 
D 4 HOH A 43 393 43 HOH WAT . 
D 4 HOH A 44 394 44 HOH WAT . 
D 4 HOH A 45 395 45 HOH WAT . 
D 4 HOH A 46 396 46 HOH WAT . 
D 4 HOH A 47 397 47 HOH WAT . 
D 4 HOH A 48 398 48 HOH WAT . 
D 4 HOH A 49 399 49 HOH WAT . 
D 4 HOH A 50 400 50 HOH WAT . 
D 4 HOH A 51 401 51 HOH WAT . 
D 4 HOH A 52 402 52 HOH WAT . 
D 4 HOH A 53 403 53 HOH WAT . 
D 4 HOH A 54 404 54 HOH WAT . 
D 4 HOH A 55 405 55 HOH WAT . 
D 4 HOH A 56 406 56 HOH WAT . 
D 4 HOH A 57 407 57 HOH WAT . 
D 4 HOH A 58 408 58 HOH WAT . 
D 4 HOH A 59 409 59 HOH WAT . 
D 4 HOH A 60 410 60 HOH WAT . 
D 4 HOH A 61 411 61 HOH WAT . 
D 4 HOH A 62 412 62 HOH WAT . 
D 4 HOH A 63 413 63 HOH WAT . 
D 4 HOH A 64 414 64 HOH WAT . 
D 4 HOH A 65 415 65 HOH WAT . 
D 4 HOH A 66 416 66 HOH WAT . 
D 4 HOH A 67 417 67 HOH WAT . 
D 4 HOH A 68 418 68 HOH WAT . 
D 4 HOH A 69 419 69 HOH WAT . 
D 4 HOH A 70 420 70 HOH WAT . 
D 4 HOH A 71 421 71 HOH WAT . 
D 4 HOH A 72 422 72 HOH WAT . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               13.093 
_atom_site.Cartn_y               35.079 
_atom_site.Cartn_z               19.013 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        31.48 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           350 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           235 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#