data_1KEO # _model_server_result.job_id H3lHRLM3OUt_jQfZ4-Pg2Q _model_server_result.datetime_utc '2025-01-11 05:56:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1keo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 1KEO # _exptl.entry_id 1KEO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KEO _cell.length_a 108.772 _cell.length_b 108.772 _cell.length_c 72.67 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KEO _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 52 A CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 106 A CYS 106 1_555 A SG CYS 141 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 119 A CYS 119 1_555 A SG CYS 153 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 6 B CYS 6 1_555 B SG CYS 52 B CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 106 B CYS 106 1_555 B SG CYS 141 B CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 B SG CYS 119 B CYS 119 1_555 B SG CYS 153 B CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 81 A ASN 81 1_555 C C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 B ND2 ASN 81 B ASN 81 1_555 D C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1KEO _atom_sites.fract_transf_matrix[1][1] 0.009194 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009194 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 201 201 NAG NAG . D 2 NAG B 1 201 201 NAG NAG . E 3 HOH A 1 2001 2001 HOH WAT . E 3 HOH A 2 2002 2002 HOH WAT . E 3 HOH A 3 2003 2003 HOH WAT . E 3 HOH A 4 2004 2004 HOH WAT . E 3 HOH A 5 2005 2005 HOH WAT . E 3 HOH A 6 2006 2006 HOH WAT . E 3 HOH A 7 2007 2007 HOH WAT . E 3 HOH A 8 2015 2015 HOH WAT . E 3 HOH A 9 2017 2017 HOH WAT . E 3 HOH A 10 2018 2018 HOH WAT . E 3 HOH A 11 2020 2020 HOH WAT . E 3 HOH A 12 2023 2023 HOH WAT . E 3 HOH A 13 2027 2027 HOH WAT . E 3 HOH A 14 2028 2028 HOH WAT . E 3 HOH A 15 2031 2031 HOH WAT . E 3 HOH A 16 2032 2032 HOH WAT . E 3 HOH A 17 2033 2033 HOH WAT . E 3 HOH A 18 2036 2036 HOH WAT . E 3 HOH A 19 2037 2037 HOH WAT . E 3 HOH A 20 2038 2038 HOH WAT . E 3 HOH A 21 2039 2039 HOH WAT . E 3 HOH A 22 2040 2040 HOH WAT . E 3 HOH A 23 2041 2041 HOH WAT . E 3 HOH A 24 2042 2042 HOH WAT . E 3 HOH A 25 2043 2043 HOH WAT . E 3 HOH A 26 2044 2044 HOH WAT . E 3 HOH A 27 2045 2045 HOH WAT . E 3 HOH A 28 2046 2046 HOH WAT . E 3 HOH A 29 2047 2047 HOH WAT . E 3 HOH A 30 2052 2052 HOH WAT . E 3 HOH A 31 2053 2053 HOH WAT . E 3 HOH A 32 2055 2055 HOH WAT . E 3 HOH A 33 2056 2056 HOH WAT . E 3 HOH A 34 2057 2057 HOH WAT . E 3 HOH A 35 2061 2061 HOH WAT . E 3 HOH A 36 2062 2062 HOH WAT . E 3 HOH A 37 2066 2066 HOH WAT . E 3 HOH A 38 2069 2069 HOH WAT . E 3 HOH A 39 2071 2071 HOH WAT . E 3 HOH A 40 2074 2074 HOH WAT . F 3 HOH B 1 2008 2008 HOH WAT . F 3 HOH B 2 2009 2009 HOH WAT . F 3 HOH B 3 2010 2010 HOH WAT . F 3 HOH B 4 2011 2011 HOH WAT . F 3 HOH B 5 2012 2012 HOH WAT . F 3 HOH B 6 2013 2013 HOH WAT . F 3 HOH B 7 2014 2014 HOH WAT . F 3 HOH B 8 2016 2016 HOH WAT . F 3 HOH B 9 2019 2019 HOH WAT . F 3 HOH B 10 2021 2021 HOH WAT . F 3 HOH B 11 2022 2022 HOH WAT . F 3 HOH B 12 2024 2024 HOH WAT . F 3 HOH B 13 2025 2025 HOH WAT . F 3 HOH B 14 2026 2026 HOH WAT . F 3 HOH B 15 2029 2029 HOH WAT . F 3 HOH B 16 2030 2030 HOH WAT . F 3 HOH B 17 2034 2034 HOH WAT . F 3 HOH B 18 2035 2035 HOH WAT . F 3 HOH B 19 2048 2048 HOH WAT . F 3 HOH B 20 2049 2049 HOH WAT . F 3 HOH B 21 2050 2050 HOH WAT . F 3 HOH B 22 2051 2051 HOH WAT . F 3 HOH B 23 2054 2054 HOH WAT . F 3 HOH B 24 2058 2058 HOH WAT . F 3 HOH B 25 2059 2059 HOH WAT . F 3 HOH B 26 2060 2060 HOH WAT . F 3 HOH B 27 2063 2063 HOH WAT . F 3 HOH B 28 2064 2064 HOH WAT . F 3 HOH B 29 2065 2065 HOH WAT . F 3 HOH B 30 2067 2067 HOH WAT . F 3 HOH B 31 2068 2068 HOH WAT . F 3 HOH B 32 2070 2070 HOH WAT . F 3 HOH B 33 2072 2072 HOH WAT . F 3 HOH B 34 2073 2073 HOH WAT . F 3 HOH B 35 2075 2075 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 2 108.404 77.89 15.56 1 59.62 ? C1 NAG 201 B 1 HETATM 2 C C2 NAG . . . D 2 108.885 76.763 14.618 1 60.16 ? C2 NAG 201 B 1 HETATM 3 C C3 NAG . . . D 2 109.458 75.59 15.424 1 65.3 ? C3 NAG 201 B 1 HETATM 4 C C4 NAG . . . D 2 110.56 76.059 16.363 1 65.27 ? C4 NAG 201 B 1 HETATM 5 C C5 NAG . . . D 2 110.018 77.202 17.236 1 64.59 ? C5 NAG 201 B 1 HETATM 6 C C6 NAG . . . D 2 111.088 77.78 18.145 1 68.61 ? C6 NAG 201 B 1 HETATM 7 C C7 NAG . . . D 2 107.795 76.578 12.479 1 61.48 ? C7 NAG 201 B 1 HETATM 8 C C8 NAG . . . D 2 106.663 75.989 11.656 1 63.28 ? C8 NAG 201 B 1 HETATM 9 N N2 NAG . . . D 2 107.816 76.273 13.771 1 61.8 ? N2 NAG 201 B 1 HETATM 10 O O3 NAG . . . D 2 109.968 74.591 14.548 1 69.3 ? O3 NAG 201 B 1 HETATM 11 O O4 NAG . . . D 2 110.978 74.964 17.177 1 66.63 ? O4 NAG 201 B 1 HETATM 12 O O5 NAG . . . D 2 109.501 78.288 16.411 1 59.21 ? O5 NAG 201 B 1 HETATM 13 O O6 NAG . . . D 2 111.846 76.753 18.775 1 80.63 ? O6 NAG 201 B 1 HETATM 14 O O7 NAG . . . D 2 108.625 77.311 11.947 1 61.53 ? O7 NAG 201 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #