data_1KF0 # _model_server_result.job_id vbASGgvXGDw2rzHkFn9Zng _model_server_result.datetime_utc '2024-12-01 07:39:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kf0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":417}' # _entry.id 1KF0 # _exptl.entry_id 1KF0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.057 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-PHOSPHOGLYCERIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.9 _cell.angle_gamma 90 _cell.entry_id 1KF0 _cell.length_a 36.6 _cell.length_b 110.3 _cell.length_c 48 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KF0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 218 A ASP 218 1_555 B MG MG . A MG 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc2 D O2B ACP . A ACP 418 1_555 B MG MG . A MG 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? # _chem_comp.formula 'C3 H7 O7 P' _chem_comp.formula_weight 186.057 _chem_comp.id 3PG _chem_comp.mon_nstd_flag . _chem_comp.name '3-PHOSPHOGLYCERIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 3PG doub 1 n n C1 O2 3PG sing 2 n n C1 C2 3PG sing 3 n n O2 HO2 3PG sing 4 n n C2 O3 3PG sing 5 n n C2 C3 3PG sing 6 n n C2 H2 3PG sing 7 n n O3 HO3 3PG sing 8 n n C3 O1P 3PG sing 9 n n C3 H31 3PG sing 10 n n C3 H32 3PG sing 11 n n O1P P 3PG sing 12 n n P O2P 3PG doub 13 n n P O3P 3PG sing 14 n n P O4P 3PG sing 15 n n O3P HOP3 3PG sing 16 n n O4P HOP4 3PG sing 17 n n # _atom_sites.entry_id 1KF0 _atom_sites.fract_transf_matrix[1][1] 0.027322 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001863 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 518 518 MG MG . C 3 3PG A 1 417 417 3PG MP3 . D 4 ACP A 1 418 418 ACP ACP . E 5 HOH A 1 419 419 HOH HOH . E 5 HOH A 2 420 420 HOH HOH . E 5 HOH A 3 421 421 HOH HOH . E 5 HOH A 4 422 422 HOH HOH . E 5 HOH A 5 423 423 HOH HOH . E 5 HOH A 6 424 424 HOH HOH . E 5 HOH A 7 425 425 HOH HOH . E 5 HOH A 8 426 426 HOH HOH . E 5 HOH A 9 427 427 HOH HOH . E 5 HOH A 10 428 428 HOH HOH . E 5 HOH A 11 429 429 HOH HOH . E 5 HOH A 12 430 430 HOH HOH . E 5 HOH A 13 431 431 HOH HOH . E 5 HOH A 14 432 432 HOH HOH . E 5 HOH A 15 433 433 HOH HOH . E 5 HOH A 16 435 435 HOH HOH . E 5 HOH A 17 436 436 HOH HOH . E 5 HOH A 18 438 438 HOH HOH . E 5 HOH A 19 439 439 HOH HOH . E 5 HOH A 20 440 440 HOH HOH . E 5 HOH A 21 441 441 HOH HOH . E 5 HOH A 22 442 442 HOH HOH . E 5 HOH A 23 443 443 HOH HOH . E 5 HOH A 24 444 444 HOH HOH . E 5 HOH A 25 445 445 HOH HOH . E 5 HOH A 26 446 446 HOH HOH . E 5 HOH A 27 447 447 HOH HOH . E 5 HOH A 28 448 448 HOH HOH . E 5 HOH A 29 449 449 HOH HOH . E 5 HOH A 30 450 450 HOH HOH . E 5 HOH A 31 451 451 HOH HOH . E 5 HOH A 32 452 452 HOH HOH . E 5 HOH A 33 453 453 HOH HOH . E 5 HOH A 34 454 454 HOH HOH . E 5 HOH A 35 455 455 HOH HOH . E 5 HOH A 36 456 456 HOH HOH . E 5 HOH A 37 457 457 HOH HOH . E 5 HOH A 38 458 458 HOH HOH . E 5 HOH A 39 459 459 HOH HOH . E 5 HOH A 40 460 460 HOH HOH . E 5 HOH A 41 461 461 HOH HOH . E 5 HOH A 42 462 462 HOH HOH . E 5 HOH A 43 463 463 HOH HOH . E 5 HOH A 44 464 464 HOH HOH . E 5 HOH A 45 465 465 HOH HOH . E 5 HOH A 46 466 466 HOH HOH . E 5 HOH A 47 467 467 HOH HOH . E 5 HOH A 48 468 468 HOH HOH . E 5 HOH A 49 469 469 HOH HOH . E 5 HOH A 50 470 470 HOH HOH . E 5 HOH A 51 471 471 HOH HOH . E 5 HOH A 52 472 472 HOH HOH . E 5 HOH A 53 473 473 HOH HOH . E 5 HOH A 54 474 474 HOH HOH . E 5 HOH A 55 475 475 HOH HOH . E 5 HOH A 56 476 476 HOH HOH . E 5 HOH A 57 477 477 HOH HOH . E 5 HOH A 58 478 478 HOH HOH . E 5 HOH A 59 480 480 HOH HOH . E 5 HOH A 60 481 481 HOH HOH . E 5 HOH A 61 482 482 HOH HOH . E 5 HOH A 62 483 483 HOH HOH . E 5 HOH A 63 484 484 HOH HOH . E 5 HOH A 64 485 485 HOH HOH . E 5 HOH A 65 486 486 HOH HOH . E 5 HOH A 66 487 487 HOH HOH . E 5 HOH A 67 488 488 HOH HOH . E 5 HOH A 68 489 489 HOH HOH . E 5 HOH A 69 490 490 HOH HOH . E 5 HOH A 70 491 491 HOH HOH . E 5 HOH A 71 493 493 HOH HOH . E 5 HOH A 72 494 494 HOH HOH . E 5 HOH A 73 495 495 HOH HOH . E 5 HOH A 74 496 496 HOH HOH . E 5 HOH A 75 500 500 HOH HOH . E 5 HOH A 76 501 501 HOH HOH . E 5 HOH A 77 502 502 HOH HOH . E 5 HOH A 78 503 503 HOH HOH . E 5 HOH A 79 504 504 HOH HOH . E 5 HOH A 80 505 505 HOH HOH . E 5 HOH A 81 506 506 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3PG . . . C 3 10.019 -6.614 10.481 1 25.9 ? C1 3PG 417 A 1 HETATM 2 O O1 3PG . . . C 3 10.663 -5.729 11.165 1 25.9 ? O1 3PG 417 A 1 HETATM 3 O O2 3PG . . . C 3 8.765 -6.816 10.715 1 25.9 ? O2 3PG 417 A 1 HETATM 4 C C2 3PG . . . C 3 10.745 -7.416 9.391 1 25.9 ? C2 3PG 417 A 1 HETATM 5 O O3 3PG . . . C 3 9.901 -8.433 8.869 1 25.9 ? O3 3PG 417 A 1 HETATM 6 C C3 3PG . . . C 3 12.031 -8.048 9.954 1 25.9 ? C3 3PG 417 A 1 HETATM 7 O O1P 3PG . . . C 3 11.743 -9.078 10.926 1 25.9 ? O1P 3PG 417 A 1 HETATM 8 P P 3PG . . . C 3 12.846 -9.47 12.025 1 29.65 ? P 3PG 417 A 1 HETATM 9 O O2P 3PG . . . C 3 13.068 -8.329 12.945 1 29.65 ? O2P 3PG 417 A 1 HETATM 10 O O3P 3PG . . . C 3 14.127 -9.81 11.365 1 29.65 ? O3P 3PG 417 A 1 HETATM 11 O O4P 3PG . . . C 3 12.386 -10.642 12.809 1 29.65 ? O4P 3PG 417 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #