data_1KF0
#
_model_server_result.job_id            nGMryGPqmgB8FEVVWTI_OA 
_model_server_result.datetime_utc      '2024-12-01 07:43:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1kf0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":418}' 
#
_entry.id    1KF0 
#
_exptl.entry_id    1KF0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              505.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.9 
_cell.angle_gamma         90 
_cell.entry_id            1KF0 
_cell.length_a            36.6 
_cell.length_b            110.3 
_cell.length_c            48 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KF0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 218 A ASP 218 1_555 B MG MG . A MG 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc2 D O2B ACP . A ACP 418 1_555 B MG MG . A MG 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
#
_chem_comp.formula           'C11 H18 N5 O12 P3' 
_chem_comp.formula_weight    505.208 
_chem_comp.id                ACP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ACP doub 18 n n 
PG O2G ACP sing 19 n n 
PG O3G ACP sing 20 n n 
PG C3B ACP sing 21 n n 
O2G HOG2 ACP sing 22 n n 
O3G HOG3 ACP sing 23 n n 
PB O1B ACP doub 24 n n 
PB O2B ACP sing 25 n n 
PB C3B ACP sing 26 n n 
PB O3A ACP sing 27 n n 
O2B HOB2 ACP sing 28 n n 
C3B H3B1 ACP sing 29 n n 
C3B H3B2 ACP sing 30 n n 
PA O1A ACP doub 31 n n 
PA O2A ACP sing 32 n n 
PA O3A ACP sing 33 n n 
PA O5' ACP sing 34 n n 
O2A HOA2 ACP sing 35 n n 
O5' C5' ACP sing 36 n n 
C5' C4' ACP sing 37 n n 
C5' "H5'1" ACP sing 38 n n 
C5' "H5'2" ACP sing 39 n n 
C4' O4' ACP sing 40 n n 
C4' C3' ACP sing 41 n n 
C4' H4' ACP sing 42 n n 
O4' C1' ACP sing 43 n n 
C3' O3' ACP sing 44 n n 
C3' C2' ACP sing 45 n n 
C3' H3' ACP sing 46 n n 
O3' HO3' ACP sing 47 n n 
C2' O2' ACP sing 48 n n 
C2' C1' ACP sing 49 n n 
C2' H2' ACP sing 50 n n 
O2' HO2' ACP sing 51 n n 
C1' N9 ACP sing 52 n n 
C1' H1' ACP sing 53 n n 
N9 C8 ACP sing 54 n y 
N9 C4 ACP sing 55 n y 
C8 N7 ACP doub 56 n y 
C8 H8 ACP sing 57 n n 
N7 C5 ACP sing 58 n y 
C5 C6 ACP sing 59 n y 
C5 C4 ACP doub 60 n y 
C6 N6 ACP sing 61 n n 
C6 N1 ACP doub 62 n y 
N6 HN61 ACP sing 63 n n 
N6 HN62 ACP sing 64 n n 
N1 C2 ACP sing 65 n y 
C2 N3 ACP doub 66 n y 
C2 H2 ACP sing 67 n n 
N3 C4 ACP sing 68 n y 
#
_atom_sites.entry_id                     1KF0 
_atom_sites.fract_transf_matrix[1][1]    0.027322 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001863 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009066 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020882 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 518 518 MG MG . 
C 3 3PG A 1 417 417 3PG MP3 . 
D 4 ACP A 1 418 418 ACP ACP . 
E 5 HOH A 1 419 419 HOH HOH . 
E 5 HOH A 2 420 420 HOH HOH . 
E 5 HOH A 3 421 421 HOH HOH . 
E 5 HOH A 4 422 422 HOH HOH . 
E 5 HOH A 5 423 423 HOH HOH . 
E 5 HOH A 6 424 424 HOH HOH . 
E 5 HOH A 7 425 425 HOH HOH . 
E 5 HOH A 8 426 426 HOH HOH . 
E 5 HOH A 9 427 427 HOH HOH . 
E 5 HOH A 10 428 428 HOH HOH . 
E 5 HOH A 11 429 429 HOH HOH . 
E 5 HOH A 12 430 430 HOH HOH . 
E 5 HOH A 13 431 431 HOH HOH . 
E 5 HOH A 14 432 432 HOH HOH . 
E 5 HOH A 15 433 433 HOH HOH . 
E 5 HOH A 16 435 435 HOH HOH . 
E 5 HOH A 17 436 436 HOH HOH . 
E 5 HOH A 18 438 438 HOH HOH . 
E 5 HOH A 19 439 439 HOH HOH . 
E 5 HOH A 20 440 440 HOH HOH . 
E 5 HOH A 21 441 441 HOH HOH . 
E 5 HOH A 22 442 442 HOH HOH . 
E 5 HOH A 23 443 443 HOH HOH . 
E 5 HOH A 24 444 444 HOH HOH . 
E 5 HOH A 25 445 445 HOH HOH . 
E 5 HOH A 26 446 446 HOH HOH . 
E 5 HOH A 27 447 447 HOH HOH . 
E 5 HOH A 28 448 448 HOH HOH . 
E 5 HOH A 29 449 449 HOH HOH . 
E 5 HOH A 30 450 450 HOH HOH . 
E 5 HOH A 31 451 451 HOH HOH . 
E 5 HOH A 32 452 452 HOH HOH . 
E 5 HOH A 33 453 453 HOH HOH . 
E 5 HOH A 34 454 454 HOH HOH . 
E 5 HOH A 35 455 455 HOH HOH . 
E 5 HOH A 36 456 456 HOH HOH . 
E 5 HOH A 37 457 457 HOH HOH . 
E 5 HOH A 38 458 458 HOH HOH . 
E 5 HOH A 39 459 459 HOH HOH . 
E 5 HOH A 40 460 460 HOH HOH . 
E 5 HOH A 41 461 461 HOH HOH . 
E 5 HOH A 42 462 462 HOH HOH . 
E 5 HOH A 43 463 463 HOH HOH . 
E 5 HOH A 44 464 464 HOH HOH . 
E 5 HOH A 45 465 465 HOH HOH . 
E 5 HOH A 46 466 466 HOH HOH . 
E 5 HOH A 47 467 467 HOH HOH . 
E 5 HOH A 48 468 468 HOH HOH . 
E 5 HOH A 49 469 469 HOH HOH . 
E 5 HOH A 50 470 470 HOH HOH . 
E 5 HOH A 51 471 471 HOH HOH . 
E 5 HOH A 52 472 472 HOH HOH . 
E 5 HOH A 53 473 473 HOH HOH . 
E 5 HOH A 54 474 474 HOH HOH . 
E 5 HOH A 55 475 475 HOH HOH . 
E 5 HOH A 56 476 476 HOH HOH . 
E 5 HOH A 57 477 477 HOH HOH . 
E 5 HOH A 58 478 478 HOH HOH . 
E 5 HOH A 59 480 480 HOH HOH . 
E 5 HOH A 60 481 481 HOH HOH . 
E 5 HOH A 61 482 482 HOH HOH . 
E 5 HOH A 62 483 483 HOH HOH . 
E 5 HOH A 63 484 484 HOH HOH . 
E 5 HOH A 64 485 485 HOH HOH . 
E 5 HOH A 65 486 486 HOH HOH . 
E 5 HOH A 66 487 487 HOH HOH . 
E 5 HOH A 67 488 488 HOH HOH . 
E 5 HOH A 68 489 489 HOH HOH . 
E 5 HOH A 69 490 490 HOH HOH . 
E 5 HOH A 70 491 491 HOH HOH . 
E 5 HOH A 71 493 493 HOH HOH . 
E 5 HOH A 72 494 494 HOH HOH . 
E 5 HOH A 73 495 495 HOH HOH . 
E 5 HOH A 74 496 496 HOH HOH . 
E 5 HOH A 75 500 500 HOH HOH . 
E 5 HOH A 76 501 501 HOH HOH . 
E 5 HOH A 77 502 502 HOH HOH . 
E 5 HOH A 78 503 503 HOH HOH . 
E 5 HOH A 79 504 504 HOH HOH . 
E 5 HOH A 80 505 505 HOH HOH . 
E 5 HOH A 81 506 506 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ACP . . . D 4 9.565 -0.721 24.499 1 63.13 ? PG ACP 418 A 1 
HETATM 2 O O1G ACP . . . D 4 9.558 -1.943 25.331 1 63.13 ? O1G ACP 418 A 1 
HETATM 3 O O2G ACP . . . D 4 8.219 -0.153 24.276 1 63.13 ? O2G ACP 418 A 1 
HETATM 4 O O3G ACP . . . D 4 10.568 0.277 24.922 1 63.13 ? O3G ACP 418 A 1 
HETATM 5 P PB ACP . . . D 4 9.739 -0.194 21.412 1 63.13 ? PB ACP 418 A 1 
HETATM 6 O O1B ACP . . . D 4 8.658 -0.862 20.62 1 63.13 ? O1B ACP 418 A 1 
HETATM 7 O O2B ACP . . . D 4 11.043 0.163 20.753 1 63.13 ? O2B ACP 418 A 1 
HETATM 8 C C3B ACP . . . D 4 10.132 -1.288 22.841 1 63.13 ? C3B ACP 418 A 1 
HETATM 9 P PA ACP . . . D 4 9.459 2.669 21.95 1 63.13 ? PA ACP 418 A 1 
HETATM 10 O O1A ACP . . . D 4 10.704 2.902 22.689 1 63.13 ? O1A ACP 418 A 1 
HETATM 11 O O2A ACP . . . D 4 9.313 3.158 20.572 1 63.13 ? O2A ACP 418 A 1 
HETATM 12 O O3A ACP . . . D 4 9.131 1.116 21.979 1 63.13 ? O3A ACP 418 A 1 
HETATM 13 O O5' ACP . . . D 4 8.272 3.209 22.806 1 31.06 ? O5' ACP 418 A 1 
HETATM 14 C C5' ACP . . . D 4 6.895 3.142 22.385 1 31.06 ? C5' ACP 418 A 1 
HETATM 15 C C4' ACP . . . D 4 6.038 2.865 23.582 1 31.06 ? C4' ACP 418 A 1 
HETATM 16 O O4' ACP . . . D 4 6.196 3.995 24.46 1 31.06 ? O4' ACP 418 A 1 
HETATM 17 C C3' ACP . . . D 4 4.559 2.768 23.298 1 31.06 ? C3' ACP 418 A 1 
HETATM 18 O O3' ACP . . . D 4 4.112 1.418 23.526 1 31.06 ? O3' ACP 418 A 1 
HETATM 19 C C2' ACP . . . D 4 3.921 3.781 24.232 1 31.06 ? C2' ACP 418 A 1 
HETATM 20 O O2' ACP . . . D 4 2.82 3.269 24.972 1 31.06 ? O2' ACP 418 A 1 
HETATM 21 C C1' ACP . . . D 4 5.027 4.122 25.254 1 31.06 ? C1' ACP 418 A 1 
HETATM 22 N N9 ACP . . . D 4 4.96 5.518 25.78 1 18.43 ? N9 ACP 418 A 1 
HETATM 23 C C8 ACP . . . D 4 4.844 6.706 25.093 1 18.43 ? C8 ACP 418 A 1 
HETATM 24 N N7 ACP . . . D 4 4.811 7.771 25.834 1 18.43 ? N7 ACP 418 A 1 
HETATM 25 C C5 ACP . . . D 4 4.912 7.254 27.112 1 18.43 ? C5 ACP 418 A 1 
HETATM 26 C C6 ACP . . . D 4 4.937 7.866 28.401 1 18.43 ? C6 ACP 418 A 1 
HETATM 27 N N6 ACP . . . D 4 4.853 9.181 28.534 1 18.43 ? N6 ACP 418 A 1 
HETATM 28 N N1 ACP . . . D 4 5.048 7.074 29.501 1 18.43 ? N1 ACP 418 A 1 
HETATM 29 C C2 ACP . . . D 4 5.132 5.746 29.351 1 18.43 ? C2 ACP 418 A 1 
HETATM 30 N N3 ACP . . . D 4 5.12 5.043 28.2 1 18.43 ? N3 ACP 418 A 1 
HETATM 31 C C4 ACP . . . D 4 5.006 5.88 27.098 1 18.43 ? C4 ACP 418 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           385 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#