data_1KF6
#
_model_server_result.job_id            TjVzn6bclEWfPbMMHeIqyQ 
_model_server_result.datetime_utc      '2024-10-12 10:20:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1kf6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":245}' 
#
_entry.id    1KF6 
#
_exptl.entry_id    1KF6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              295.795 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE3-S4 CLUSTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1KF6 
_cell.length_a            96.505 
_cell.length_b            137.836 
_cell.length_c            273.451 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KF6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
PQS octameric 8 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,O,P,Q,R,FA,GA 1 1 
E,F,G,H,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,HA,IA 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 P N N 
? 11 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O THR 358 A THR 357 1_555 I K K . A K 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? 
metalc ? metalc2 A O MET 359 A MET 358 1_555 I K K . A K 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? 
metalc ? metalc3 A O GLY 360 A GLY 359 1_555 I K K . A K 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc4 A O GLU 380 A GLU 379 1_555 I K K . A K 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? 
metalc ? metalc5 A O SER 382 A SER 381 1_555 I K K . A K 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? 
metalc ? metalc6 B SG CYS 57 B CYS 57 1_555 O FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc7 B SG CYS 62 B CYS 62 1_555 O FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc8 B SG CYS 65 B CYS 65 1_555 O FE1 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc9 B SG CYS 77 B CYS 77 1_555 O FE1 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc10 B SG CYS 148 B CYS 148 1_555 Q FE2 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc11 B SG CYS 151 B CYS 151 1_555 Q FE1 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc12 B SG CYS 154 B CYS 154 1_555 Q FE3 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc13 B SG CYS 158 B CYS 158 1_555 P FE4 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc14 B SG CYS 204 B CYS 204 1_555 P FE1 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc15 B SG CYS 210 B CYS 210 1_555 P FE3 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc16 B SG CYS 214 B CYS 214 1_555 Q FE4 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc17 E O THR 358 M THR 357 1_555 S K K . M K 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? 
metalc ? metalc18 E O MET 359 M MET 358 1_555 S K K . M K 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? 
metalc ? metalc19 E O GLY 360 M GLY 359 1_555 S K K . M K 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? 
metalc ? metalc20 E O GLU 380 M GLU 379 1_555 S K K . M K 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? 
metalc ? metalc21 F SG CYS 57 N CYS 57 1_555 W FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc22 F SG CYS 62 N CYS 62 1_555 W FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc23 F SG CYS 65 N CYS 65 1_555 W FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc24 F SG CYS 77 N CYS 77 1_555 W FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc25 F SG CYS 148 N CYS 148 1_555 Y FE2 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc26 F SG CYS 151 N CYS 151 1_555 Y FE1 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc27 F SG CYS 154 N CYS 154 1_555 Y FE3 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc28 F SG CYS 158 N CYS 158 1_555 X FE4 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc29 F SG CYS 204 N CYS 204 1_555 X FE1 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc30 F SG CYS 210 N CYS 210 1_555 X FE3 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc31 F SG CYS 214 N CYS 214 1_555 Y FE4 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
#
_chem_comp.formula           'Fe3 S4' 
_chem_comp.formula_weight    295.795 
_chem_comp.id                F3S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE3-S4 CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S1 F3S sing 220 n n 
FE1 S2 F3S sing 221 n n 
FE1 S3 F3S sing 222 n n 
FE3 S1 F3S sing 223 n n 
FE3 S3 F3S sing 224 n n 
FE3 S4 F3S sing 225 n n 
FE4 S2 F3S sing 226 n n 
FE4 S3 F3S sing 227 n n 
FE4 S4 F3S sing 228 n n 
#
_atom_sites.entry_id                     1KF6 
_atom_sites.fract_transf_matrix[1][1]    0.01036 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00725 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00366 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 K A 1 720 720 K K . 
J 6 OAA A 1 702 702 OAA OAA . 
K 7 ACT A 1 703 703 ACT ACT . 
L 8 FAD A 1 721 601 FAD FAD . 
M 9 1PE A 1 705 705 1PE 1PE . 
N 7 ACT B 1 704 704 ACT ACT . 
O 10 FES B 1 244 244 FES FES . 
P 11 F3S B 1 245 245 F3S F3S . 
Q 12 SF4 B 1 246 246 SF4 FS4 . 
R 13 HQO C 1 700 700 HQO HQO . 
S 5 K M 1 820 820 K K . 
T 6 OAA M 1 802 802 OAA OAA . 
U 8 FAD M 1 821 601 FAD FAD . 
V 7 ACT N 1 803 803 ACT ACT . 
W 10 FES N 1 244 244 FES FES . 
X 11 F3S N 1 245 245 F3S F3S . 
Y 12 SF4 N 1 246 246 SF4 FS4 . 
Z 13 HQO N 1 800 800 HQO HQO . 
AA 14 CE1 O 1 811 811 CE1 CE1 . 
BA 14 CE1 O 1 812 812 CE1 CE1 . 
CA 14 CE1 O 1 813 813 CE1 CE1 . 
DA 14 CE1 P 1 710 710 CE1 CE1 . 
EA 14 CE1 P 1 810 810 CE1 CE1 . 
FA 15 HOH A 1 751 751 HOH HOH . 
FA 15 HOH A 2 752 752 HOH HOH . 
FA 15 HOH A 3 753 753 HOH HOH . 
FA 15 HOH A 4 754 754 HOH HOH . 
FA 15 HOH A 5 755 755 HOH HOH . 
FA 15 HOH A 6 756 756 HOH HOH . 
FA 15 HOH A 7 757 757 HOH HOH . 
FA 15 HOH A 8 758 758 HOH HOH . 
FA 15 HOH A 9 759 759 HOH HOH . 
FA 15 HOH A 10 760 760 HOH HOH . 
GA 15 HOH B 1 750 750 HOH HOH . 
HA 15 HOH M 1 851 851 HOH HOH . 
HA 15 HOH M 2 852 852 HOH HOH . 
HA 15 HOH M 3 853 853 HOH HOH . 
HA 15 HOH M 4 854 854 HOH HOH . 
IA 15 HOH N 1 850 850 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 F3S . . . P 11 20.578 16.581 -47.239 1 27.18 ? FE1 F3S 245 B 1 
HETATM 2 FE FE3 F3S . . . P 11 19.253 18.702 -46.1 1 25.77 ? FE3 F3S 245 B 1 
HETATM 3 FE FE4 F3S . . . P 11 17.928 16.644 -47.033 1 25.71 ? FE4 F3S 245 B 1 
HETATM 4 S S1 F3S . . . P 11 20.924 18.864 -47.553 1 25.37 ? S1 F3S 245 B 1 
HETATM 5 S S2 F3S . . . P 11 19.137 15.952 -48.847 1 27.9 ? S2 F3S 245 B 1 
HETATM 6 S S3 F3S . . . P 11 19.462 16.591 -45.357 1 23.56 ? S3 F3S 245 B 1 
HETATM 7 S S4 F3S . . . P 11 17.359 18.784 -47.261 1 26.21 ? S4 F3S 245 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          20 
_model_server_stats.element_count           7 
#