data_1KFD # _model_server_result.job_id zcIydWJfPh-6o9Hn1pAz-g _model_server_result.datetime_utc '2025-07-08 06:02:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kfd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 1KFD # _exptl.entry_id 1KFD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KFD _cell.length_a 104.3 _cell.length_b 104.3 _cell.length_c 86 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KFD _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H16 N3 O14 P3' _chem_comp.formula_weight 483.156 _chem_comp.id CTP _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CTP sing 70 n n N1 C6 CTP sing 71 n n N1 C1' CTP sing 72 n n C2 N3 CTP sing 73 n n C2 O2 CTP doub 74 n n N3 C4 CTP doub 75 n n C4 C5 CTP sing 76 n n C4 N4 CTP sing 77 n n C5 C6 CTP doub 78 n n C5 H5 CTP sing 79 n n C6 H6 CTP sing 80 n n N4 HN41 CTP sing 81 n n N4 HN42 CTP sing 82 n n C1' C2' CTP sing 83 n n C1' O4' CTP sing 84 n n C1' H1' CTP sing 85 n n C2' O2' CTP sing 86 n n C2' C3' CTP sing 87 n n C2' H2' CTP sing 88 n n O2' HO2' CTP sing 89 n n C3' C4' CTP sing 90 n n C3' O3' CTP sing 91 n n C3' H3' CTP sing 92 n n C4' O4' CTP sing 93 n n C4' C5' CTP sing 94 n n C4' H4' CTP sing 95 n n O3' HO3' CTP sing 96 n n C5' O5' CTP sing 97 n n C5' "H5'1" CTP sing 98 n n C5' "H5'2" CTP sing 99 n n O5' PA CTP sing 100 n n PA O1A CTP doub 101 n n PA O2A CTP sing 102 n n PA O3A CTP sing 103 n n O2A HOA2 CTP sing 104 n n O3A PB CTP sing 105 n n PB O1B CTP doub 106 n n PB O2B CTP sing 107 n n PB O3B CTP sing 108 n n O2B HOB2 CTP sing 109 n n O3B PG CTP sing 110 n n PG O1G CTP doub 111 n n PG O2G CTP sing 112 n n PG O3G CTP sing 113 n n O2G HOG2 CTP sing 114 n n O3G HOG3 CTP sing 115 n n # _atom_sites.entry_id 1KFD _atom_sites.fract_transf_matrix[1][1] 0.009588 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009588 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id CTP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id CTP _pdbx_nonpoly_scheme.auth_mon_id CTP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CTP . . . B 2 56.472 1.207 102.815 1 0 ? N1 CTP 1 A 1 HETATM 2 C C2 CTP . . . B 2 56.679 2.527 102.489 1 0 ? C2 CTP 1 A 1 HETATM 3 N N3 CTP . . . B 2 56.414 3.516 103.338 1 0 ? N3 CTP 1 A 1 HETATM 4 C C4 CTP . . . B 2 55.899 3.291 104.566 1 0 ? C4 CTP 1 A 1 HETATM 5 C C5 CTP . . . B 2 55.662 1.881 104.902 1 0 ? C5 CTP 1 A 1 HETATM 6 C C6 CTP . . . B 2 55.917 0.84 104.09 1 0 ? C6 CTP 1 A 1 HETATM 7 O O2 CTP . . . B 2 57.196 2.766 101.272 1 0 ? O2 CTP 1 A 1 HETATM 8 N N4 CTP . . . B 2 55.68 4.334 105.297 1 0 ? N4 CTP 1 A 1 HETATM 9 C C1' CTP . . . B 2 56.5 -0.045 101.983 1 0 ? C1' CTP 1 A 1 HETATM 10 C C2' CTP . . . B 2 57.572 -0.967 102.588 1 0 ? C2' CTP 1 A 1 HETATM 11 C C3' CTP . . . B 2 56.733 -1.986 103.331 1 0 ? C3' CTP 1 A 1 HETATM 12 C C4' CTP . . . B 2 55.498 -2.05 102.479 1 0 ? C4' CTP 1 A 1 HETATM 13 O O4' CTP . . . B 2 55.318 -0.743 101.909 1 0 ? O4' CTP 1 A 1 HETATM 14 O O3' CTP . . . B 2 57.821 -3.204 103.521 1 0 ? O3' CTP 1 A 1 HETATM 15 C C5' CTP . . . B 2 54.288 -2.353 103.315 1 0 ? C5' CTP 1 A 1 HETATM 16 O O5' CTP . . . B 2 53.139 -2.435 102.518 1 0 ? O5' CTP 1 A 1 HETATM 17 P PA CTP . . . B 2 52.549 -3.87 102.363 1 0 ? PA CTP 1 A 1 HETATM 18 O O1A CTP . . . B 2 53.495 -4.867 102.907 1 0 ? O1A CTP 1 A 1 HETATM 19 O O2A CTP . . . B 2 52.294 -4.162 100.934 1 0 ? O2A CTP 1 A 1 HETATM 20 O O3A CTP . . . B 2 51.272 -3.783 103.162 1 0 ? O3A CTP 1 A 1 HETATM 21 P PB CTP . . . B 2 50.774 -4.717 104.381 1 0 ? PB CTP 1 A 1 HETATM 22 O O1B CTP . . . B 2 51.806 -5.735 104.681 1 0 ? O1B CTP 1 A 1 HETATM 23 O O2B CTP . . . B 2 49.515 -5.399 104.013 1 0 ? O2B CTP 1 A 1 HETATM 24 O O3B CTP . . . B 2 50.616 -3.641 105.483 1 0 ? O3B CTP 1 A 1 HETATM 25 P PG CTP . . . B 2 50.153 -3.724 107.057 1 0 ? PG CTP 1 A 1 HETATM 26 O O1G CTP . . . B 2 49.931 -5.134 107.449 1 0 ? O1G CTP 1 A 1 HETATM 27 O O2G CTP . . . B 2 51.204 -3.144 107.924 1 0 ? O2G CTP 1 A 1 HETATM 28 O O3G CTP . . . B 2 48.876 -2.903 107.148 1 0 ? O3G CTP 1 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 28 #