data_1KFY # _model_server_result.job_id PEST-qZ9yAMjws-iP3wXOw _model_server_result.datetime_utc '2024-10-12 12:20:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kfy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":703}' # _entry.id 1KFY # _exptl.entry_id 1KFY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KFY _cell.length_a 96.147 _cell.length_b 137.814 _cell.length_c 270.986 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KFY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PQS octameric 8 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O 1 1 E,F,G,H,P,Q,R,S,T,U,V,W 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 45 A HIS 44 1_555 J C8M FAD . A FAD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? covale ? covale2 E NE2 HIS 45 M HIS 44 1_555 Q C8M FAD . M FAD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? metalc ? metalc1 B SG CYS 57 B CYS 57 1_555 K FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc2 B SG CYS 62 B CYS 62 1_555 K FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc3 B SG CYS 65 B CYS 65 1_555 K FE1 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 B SG CYS 77 B CYS 77 1_555 K FE1 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc5 B SG CYS 148 B CYS 148 1_555 M FE2 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc6 B SG CYS 151 B CYS 151 1_555 M FE1 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc7 B SG CYS 154 B CYS 154 1_555 M FE3 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc8 B SG CYS 158 B CYS 158 1_555 L FE4 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc9 B SG CYS 204 B CYS 204 1_555 L FE1 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc10 B SG CYS 210 B CYS 210 1_555 L FE3 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc11 B SG CYS 214 B CYS 214 1_555 M FE4 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc12 F SG CYS 57 N CYS 57 1_555 R FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc13 F SG CYS 62 N CYS 62 1_555 R FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc14 F SG CYS 65 N CYS 65 1_555 R FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc15 F SG CYS 77 N CYS 77 1_555 R FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc16 F SG CYS 148 N CYS 148 1_555 T FE2 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc17 F SG CYS 151 N CYS 151 1_555 T FE1 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc18 F SG CYS 154 N CYS 154 1_555 T FE3 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc19 F SG CYS 158 N CYS 158 1_555 S FE4 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc20 F SG CYS 204 N CYS 204 1_555 S FE1 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc21 F SG CYS 210 N CYS 210 1_555 S FE3 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc22 F SG CYS 214 N CYS 214 1_555 T FE4 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 220 n n PA O2A FAD sing 221 n n PA O5B FAD sing 222 n n PA O3P FAD sing 223 n n O2A HOA2 FAD sing 224 n n O5B C5B FAD sing 225 n n C5B C4B FAD sing 226 n n C5B H51A FAD sing 227 n n C5B H52A FAD sing 228 n n C4B O4B FAD sing 229 n n C4B C3B FAD sing 230 n n C4B H4B FAD sing 231 n n O4B C1B FAD sing 232 n n C3B O3B FAD sing 233 n n C3B C2B FAD sing 234 n n C3B H3B FAD sing 235 n n O3B HO3A FAD sing 236 n n C2B O2B FAD sing 237 n n C2B C1B FAD sing 238 n n C2B H2B FAD sing 239 n n O2B HO2A FAD sing 240 n n C1B N9A FAD sing 241 n n C1B H1B FAD sing 242 n n N9A C8A FAD sing 243 n y N9A C4A FAD sing 244 n y C8A N7A FAD doub 245 n y C8A H8A FAD sing 246 n n N7A C5A FAD sing 247 n y C5A C6A FAD sing 248 n y C5A C4A FAD doub 249 n y C6A N6A FAD sing 250 n n C6A N1A FAD doub 251 n y N6A H61A FAD sing 252 n n N6A H62A FAD sing 253 n n N1A C2A FAD sing 254 n y C2A N3A FAD doub 255 n y C2A H2A FAD sing 256 n n N3A C4A FAD sing 257 n y N1 C2 FAD sing 258 n n N1 C10 FAD doub 259 n n C2 O2 FAD doub 260 n n C2 N3 FAD sing 261 n n N3 C4 FAD sing 262 n n N3 HN3 FAD sing 263 n n C4 O4 FAD doub 264 n n C4 C4X FAD sing 265 n n C4X N5 FAD doub 266 n n C4X C10 FAD sing 267 n n N5 C5X FAD sing 268 n n C5X C6 FAD doub 269 n y C5X C9A FAD sing 270 n y C6 C7 FAD sing 271 n y C6 H6 FAD sing 272 n n C7 C7M FAD sing 273 n n C7 C8 FAD doub 274 n y C7M HM71 FAD sing 275 n n C7M HM72 FAD sing 276 n n C7M HM73 FAD sing 277 n n C8 C8M FAD sing 278 n n C8 C9 FAD sing 279 n y C8M HM81 FAD sing 280 n n C8M HM82 FAD sing 281 n n C8M HM83 FAD sing 282 n n C9 C9A FAD doub 283 n y C9 H9 FAD sing 284 n n C9A N10 FAD sing 285 n n N10 C10 FAD sing 286 n n N10 C1' FAD sing 287 n n C1' C2' FAD sing 288 n n C1' "H1'1" FAD sing 289 n n C1' "H1'2" FAD sing 290 n n C2' O2' FAD sing 291 n n C2' C3' FAD sing 292 n n C2' H2' FAD sing 293 n n O2' HO2' FAD sing 294 n n C3' O3' FAD sing 295 n n C3' C4' FAD sing 296 n n C3' H3' FAD sing 297 n n O3' HO3' FAD sing 298 n n C4' O4' FAD sing 299 n n C4' C5' FAD sing 300 n n C4' H4' FAD sing 301 n n O4' HO4' FAD sing 302 n n C5' O5' FAD sing 303 n n C5' "H5'1" FAD sing 304 n n C5' "H5'2" FAD sing 305 n n O5' P FAD sing 306 n n P O1P FAD doub 307 n n P O2P FAD sing 308 n n P O3P FAD sing 309 n n O2P HOP2 FAD sing 310 n n # _atom_sites.entry_id 1KFY _atom_sites.fract_transf_matrix[1][1] 0.0104 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 OAA A 1 702 3 OAA OAA . J 6 FAD A 1 703 1 FAD FAD . K 7 FES B 1 244 1 FES FES . L 8 F3S B 1 245 1 F3S F3S . M 9 SF4 B 1 246 1 SF4 FS4 . N 10 BRS B 1 700 2 BRS DNP . O 11 CE1 D 1 710 5 CE1 CE1 . P 5 OAA M 1 802 3 OAA OAA . Q 6 FAD M 1 803 1 FAD FAD . R 7 FES N 1 244 1 FES FES . S 8 F3S N 1 245 1 F3S F3S . T 9 SF4 N 1 246 1 SF4 FS4 . U 10 BRS N 1 800 2 BRS DNP . V 11 CE1 O 1 811 6 CE1 CE1 . W 11 CE1 P 1 810 4 CE1 CE1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . J 6 10.101 23.099 -15.549 1 11.12 ? PA FAD 703 A 1 HETATM 2 O O1A FAD . . . J 6 9.174 24.282 -15.328 1 11.12 ? O1A FAD 703 A 1 HETATM 3 O O2A FAD . . . J 6 11.289 23.472 -16.441 1 11.12 ? O2A FAD 703 A 1 HETATM 4 O O5B FAD . . . J 6 9.368 21.909 -16.184 1 11.12 ? O5B FAD 703 A 1 HETATM 5 C C5B FAD . . . J 6 8.295 21.165 -15.526 1 11.12 ? C5B FAD 703 A 1 HETATM 6 C C4B FAD . . . J 6 8.277 19.673 -15.894 1 11.12 ? C4B FAD 703 A 1 HETATM 7 O O4B FAD . . . J 6 7.174 18.998 -15.209 1 11.12 ? O4B FAD 703 A 1 HETATM 8 C C3B FAD . . . J 6 8.004 19.46 -17.357 1 11.12 ? C3B FAD 703 A 1 HETATM 9 O O3B FAD . . . J 6 8.838 18.412 -17.902 1 11.12 ? O3B FAD 703 A 1 HETATM 10 C C2B FAD . . . J 6 6.494 19.142 -17.453 1 11.12 ? C2B FAD 703 A 1 HETATM 11 O O2B FAD . . . J 6 6.193 18.383 -18.614 1 11.12 ? O2B FAD 703 A 1 HETATM 12 C C1B FAD . . . J 6 6.304 18.368 -16.21 1 11.12 ? C1B FAD 703 A 1 HETATM 13 N N9A FAD . . . J 6 4.85 18.324 -15.81 1 11.12 ? N9A FAD 703 A 1 HETATM 14 C C8A FAD . . . J 6 4.118 19.391 -15.385 1 11.12 ? C8A FAD 703 A 1 HETATM 15 N N7A FAD . . . J 6 2.875 19.016 -15.092 1 11.12 ? N7A FAD 703 A 1 HETATM 16 C C5A FAD . . . J 6 2.83 17.699 -15.344 1 11.12 ? C5A FAD 703 A 1 HETATM 17 C C6A FAD . . . J 6 1.818 16.717 -15.241 1 11.12 ? C6A FAD 703 A 1 HETATM 18 N N6A FAD . . . J 6 0.578 17.056 -14.788 1 11.12 ? N6A FAD 703 A 1 HETATM 19 N N1A FAD . . . J 6 2.093 15.388 -15.569 1 11.12 ? N1A FAD 703 A 1 HETATM 20 C C2A FAD . . . J 6 3.317 15.006 -16.008 1 11.12 ? C2A FAD 703 A 1 HETATM 21 N N3A FAD . . . J 6 4.322 15.915 -16.126 1 11.12 ? N3A FAD 703 A 1 HETATM 22 C C4A FAD . . . J 6 4.101 17.24 -15.795 1 11.12 ? C4A FAD 703 A 1 HETATM 23 N N1 FAD . . . J 6 16.226 31.196 -13.452 1 11.12 ? N1 FAD 703 A 1 HETATM 24 C C2 FAD . . . J 6 17.549 31.473 -13.377 1 11.12 ? C2 FAD 703 A 1 HETATM 25 O O2 FAD . . . J 6 18.137 31.331 -12.334 1 11.12 ? O2 FAD 703 A 1 HETATM 26 N N3 FAD . . . J 6 18.17 32.196 -14.371 1 11.12 ? N3 FAD 703 A 1 HETATM 27 C C4 FAD . . . J 6 17.467 32.602 -15.488 1 11.12 ? C4 FAD 703 A 1 HETATM 28 O O4 FAD . . . J 6 18.037 33.201 -16.381 1 11.12 ? O4 FAD 703 A 1 HETATM 29 C C4X FAD . . . J 6 16.082 32.334 -15.57 1 11.12 ? C4X FAD 703 A 1 HETATM 30 N N5 FAD . . . J 6 15.365 32.686 -16.661 1 11.12 ? N5 FAD 703 A 1 HETATM 31 C C5X FAD . . . J 6 14.045 32.411 -16.808 1 11.12 ? C5X FAD 703 A 1 HETATM 32 C C6 FAD . . . J 6 13.411 32.825 -17.984 1 11.12 ? C6 FAD 703 A 1 HETATM 33 C C7 FAD . . . J 6 12.054 32.589 -18.181 1 11.12 ? C7 FAD 703 A 1 HETATM 34 C C7M FAD . . . J 6 11.483 33.104 -19.501 1 11.12 ? C7M FAD 703 A 1 HETATM 35 C C8 FAD . . . J 6 11.305 31.837 -17.189 1 11.12 ? C8 FAD 703 A 1 HETATM 36 C C8M FAD . . . J 6 9.813 31.554 -17.322 1 11.12 ? C8M FAD 703 A 1 HETATM 37 C C9 FAD . . . J 6 11.942 31.4 -16.003 1 11.12 ? C9 FAD 703 A 1 HETATM 38 C C9A FAD . . . J 6 13.34 31.661 -15.809 1 11.12 ? C9A FAD 703 A 1 HETATM 39 N N10 FAD . . . J 6 14.061 31.261 -14.655 1 11.12 ? N10 FAD 703 A 1 HETATM 40 C C10 FAD . . . J 6 15.478 31.545 -14.539 1 11.12 ? C10 FAD 703 A 1 HETATM 41 C C1' FAD . . . J 6 13.394 30.473 -13.594 1 11.12 ? C1' FAD 703 A 1 HETATM 42 C C2' FAD . . . J 6 13.698 28.981 -13.729 1 11.12 ? C2' FAD 703 A 1 HETATM 43 O O2' FAD . . . J 6 14.194 28.747 -15 1 11.12 ? O2' FAD 703 A 1 HETATM 44 C C3' FAD . . . J 6 12.493 28.081 -13.585 1 11.12 ? C3' FAD 703 A 1 HETATM 45 O O3' FAD . . . J 6 11.977 28.353 -12.297 1 11.12 ? O3' FAD 703 A 1 HETATM 46 C C4' FAD . . . J 6 12.955 26.591 -13.683 1 11.12 ? C4' FAD 703 A 1 HETATM 47 O O4' FAD . . . J 6 13.415 26.326 -15.006 1 11.12 ? O4' FAD 703 A 1 HETATM 48 C C5' FAD . . . J 6 11.92 25.546 -13.392 1 11.12 ? C5' FAD 703 A 1 HETATM 49 O O5' FAD . . . J 6 12.347 24.276 -13.811 1 11.12 ? O5' FAD 703 A 1 HETATM 50 P P FAD . . . J 6 11.692 23.085 -13.282 1 11.12 ? P FAD 703 A 1 HETATM 51 O O1P FAD . . . J 6 12.661 21.89 -13.238 1 11.12 ? O1P FAD 703 A 1 HETATM 52 O O2P FAD . . . J 6 11.161 23.39 -11.88 1 11.12 ? O2P FAD 703 A 1 HETATM 53 O O3P FAD . . . J 6 10.62 22.652 -14.226 1 11.12 ? O3P FAD 703 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #