data_1KFY # _model_server_result.job_id yd352m0PphnDks7GgqsGjw _model_server_result.datetime_utc '2024-10-12 12:26:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kfy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":800}' # _entry.id 1KFY # _exptl.entry_id 1KFY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 322.701 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[1-(4-CHLORO-PHENYL)-ETHYL]-4,6-DINITRO-PHENOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KFY _cell.length_a 96.147 _cell.length_b 137.814 _cell.length_c 270.986 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KFY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PQS octameric 8 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O 1 1 E,F,G,H,P,Q,R,S,T,U,V,W 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 N N N ? 10 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 45 A HIS 44 1_555 J C8M FAD . A FAD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? covale ? covale2 E NE2 HIS 45 M HIS 44 1_555 Q C8M FAD . M FAD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? metalc ? metalc1 B SG CYS 57 B CYS 57 1_555 K FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc2 B SG CYS 62 B CYS 62 1_555 K FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc3 B SG CYS 65 B CYS 65 1_555 K FE1 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 B SG CYS 77 B CYS 77 1_555 K FE1 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc5 B SG CYS 148 B CYS 148 1_555 M FE2 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc6 B SG CYS 151 B CYS 151 1_555 M FE1 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc7 B SG CYS 154 B CYS 154 1_555 M FE3 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc8 B SG CYS 158 B CYS 158 1_555 L FE4 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc9 B SG CYS 204 B CYS 204 1_555 L FE1 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc10 B SG CYS 210 B CYS 210 1_555 L FE3 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc11 B SG CYS 214 B CYS 214 1_555 M FE4 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc12 F SG CYS 57 N CYS 57 1_555 R FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc13 F SG CYS 62 N CYS 62 1_555 R FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc14 F SG CYS 65 N CYS 65 1_555 R FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc15 F SG CYS 77 N CYS 77 1_555 R FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc16 F SG CYS 148 N CYS 148 1_555 T FE2 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc17 F SG CYS 151 N CYS 151 1_555 T FE1 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc18 F SG CYS 154 N CYS 154 1_555 T FE3 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc19 F SG CYS 158 N CYS 158 1_555 S FE4 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc20 F SG CYS 204 N CYS 204 1_555 S FE1 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc21 F SG CYS 210 N CYS 210 1_555 S FE3 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc22 F SG CYS 214 N CYS 214 1_555 T FE4 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? # _chem_comp.formula 'C14 H11 Cl N2 O5' _chem_comp.formula_weight 322.701 _chem_comp.id BRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-[1-(4-CHLORO-PHENYL)-ETHYL]-4,6-DINITRO-PHENOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DNP-19 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O2 BRS doub 70 n n N1 O3 BRS sing 71 n n N1 C12 BRS sing 72 n n N4 O5 BRS sing 73 n n N4 O6 BRS doub 74 n n N4 C8 BRS sing 75 n n C7 C8 BRS doub 76 n y C7 C12 BRS sing 77 n y C7 HC7 BRS sing 78 n n C8 C9 BRS sing 79 n y C9 C10 BRS doub 80 n y C9 HC9 BRS sing 81 n n C10 C11 BRS sing 82 n y C10 C21 BRS sing 83 n n C11 C12 BRS doub 84 n y C11 O13 BRS sing 85 n n O13 HO13 BRS sing 86 n n C14 C15 BRS doub 87 n y C14 C19 BRS sing 88 n y C14 HC14 BRS sing 89 n n C15 C16 BRS sing 90 n y C15 C21 BRS sing 91 n n C16 C17 BRS doub 92 n y C16 HC16 BRS sing 93 n n C17 C18 BRS sing 94 n y C17 HC17 BRS sing 95 n n C18 C19 BRS doub 96 n y C18 CL20 BRS sing 97 n n C19 HC19 BRS sing 98 n n C21 C22 BRS sing 99 n n C21 HC21 BRS sing 100 n n C22 H221 BRS sing 101 n n C22 H222 BRS sing 102 n n C22 H223 BRS sing 103 n n # _atom_sites.entry_id 1KFY _atom_sites.fract_transf_matrix[1][1] 0.0104 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 OAA A 1 702 3 OAA OAA . J 6 FAD A 1 703 1 FAD FAD . K 7 FES B 1 244 1 FES FES . L 8 F3S B 1 245 1 F3S F3S . M 9 SF4 B 1 246 1 SF4 FS4 . N 10 BRS B 1 700 2 BRS DNP . O 11 CE1 D 1 710 5 CE1 CE1 . P 5 OAA M 1 802 3 OAA OAA . Q 6 FAD M 1 803 1 FAD FAD . R 7 FES N 1 244 1 FES FES . S 8 F3S N 1 245 1 F3S F3S . T 9 SF4 N 1 246 1 SF4 FS4 . U 10 BRS N 1 800 2 BRS DNP . V 11 CE1 O 1 811 6 CE1 CE1 . W 11 CE1 P 1 810 4 CE1 CE1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BRS . . . U 10 36.731 -21.951 -50.716 1 61.12 ? N1 BRS 800 N 1 HETATM 2 O O2 BRS . . . U 10 36.029 -21.059 -50.223 1 61.12 ? O2 BRS 800 N 1 HETATM 3 O O3 BRS . . . U 10 37.918 -21.944 -50.366 1 61.12 ? O3 BRS 800 N 1 HETATM 4 N N4 BRS . . . U 10 37.695 -26.036 -53.622 1 61.12 ? N4 BRS 800 N 1 HETATM 5 O O5 BRS . . . U 10 37.333 -26.925 -54.413 1 61.12 ? O5 BRS 800 N 1 HETATM 6 O O6 BRS . . . U 10 38.883 -26.025 -53.269 1 61.12 ? O6 BRS 800 N 1 HETATM 7 C C7 BRS . . . U 10 37.105 -24.007 -52.212 1 61.12 ? C7 BRS 800 N 1 HETATM 8 C C8 BRS . . . U 10 36.707 -25.003 -53.11 1 61.12 ? C8 BRS 800 N 1 HETATM 9 C C9 BRS . . . U 10 35.389 -25.052 -53.542 1 61.12 ? C9 BRS 800 N 1 HETATM 10 C C10 BRS . . . U 10 34.428 -24.123 -53.095 1 61.12 ? C10 BRS 800 N 1 HETATM 11 C C11 BRS . . . U 10 34.804 -23.089 -52.175 1 61.12 ? C11 BRS 800 N 1 HETATM 12 C C12 BRS . . . U 10 36.185 -23.038 -51.714 1 61.12 ? C12 BRS 800 N 1 HETATM 13 O O13 BRS . . . U 10 33.842 -22.162 -51.728 1 61.12 ? O13 BRS 800 N 1 HETATM 14 C C14 BRS . . . U 10 33.529 -22.978 -55.819 1 61.12 ? C14 BRS 800 N 1 HETATM 15 C C15 BRS . . . U 10 33.021 -24.151 -55.216 1 61.12 ? C15 BRS 800 N 1 HETATM 16 C C16 BRS . . . U 10 32.553 -25.201 -56.063 1 61.12 ? C16 BRS 800 N 1 HETATM 17 C C17 BRS . . . U 10 32.6 -25.065 -57.465 1 61.12 ? C17 BRS 800 N 1 HETATM 18 C C18 BRS . . . U 10 33.11 -23.888 -58.039 1 61.12 ? C18 BRS 800 N 1 HETATM 19 C C19 BRS . . . U 10 33.576 -22.842 -57.212 1 61.12 ? C19 BRS 800 N 1 HETATM 20 CL CL20 BRS . . . U 10 33.162 -23.732 -59.798 1 61.12 ? CL20 BRS 800 N 1 HETATM 21 C C21 BRS . . . U 10 32.99 -24.251 -53.643 1 61.12 ? C21 BRS 800 N 1 HETATM 22 C C22 BRS . . . U 10 32.4 -25.581 -53.153 1 61.12 ? C22 BRS 800 N 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #