data_1KFY
#
_model_server_result.job_id            hsx6jQ2mYU1SiCmMqiL-yw 
_model_server_result.datetime_utc      '2024-10-12 12:27:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1kfy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":810}' 
#
_entry.id    1KFY 
#
_exptl.entry_id    1KFY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              538.755 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'O-DODECANYL OCTAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1KFY 
_cell.length_a            96.147 
_cell.length_b            137.814 
_cell.length_c            270.986 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KFY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
PQS octameric 8 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,O 1 1 
E,F,G,H,P,Q,R,S,T,U,V,W 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 O N N 
? 11 V N N 
? 11 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 45 A HIS 44 1_555 J C8M FAD . A FAD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? 
covale ? covale2 E NE2 HIS 45 M HIS 44 1_555 Q C8M FAD . M FAD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? 
metalc ? metalc1 B SG CYS 57 B CYS 57 1_555 K FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc2 B SG CYS 62 B CYS 62 1_555 K FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc3 B SG CYS 65 B CYS 65 1_555 K FE1 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc4 B SG CYS 77 B CYS 77 1_555 K FE1 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc5 B SG CYS 148 B CYS 148 1_555 M FE2 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc6 B SG CYS 151 B CYS 151 1_555 M FE1 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc7 B SG CYS 154 B CYS 154 1_555 M FE3 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc8 B SG CYS 158 B CYS 158 1_555 L FE4 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc9 B SG CYS 204 B CYS 204 1_555 L FE1 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc10 B SG CYS 210 B CYS 210 1_555 L FE3 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc11 B SG CYS 214 B CYS 214 1_555 M FE4 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc12 F SG CYS 57 N CYS 57 1_555 R FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc13 F SG CYS 62 N CYS 62 1_555 R FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc14 F SG CYS 65 N CYS 65 1_555 R FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc15 F SG CYS 77 N CYS 77 1_555 R FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc16 F SG CYS 148 N CYS 148 1_555 T FE2 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc17 F SG CYS 151 N CYS 151 1_555 T FE1 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc18 F SG CYS 154 N CYS 154 1_555 T FE3 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc19 F SG CYS 158 N CYS 158 1_555 S FE4 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc20 F SG CYS 204 N CYS 204 1_555 S FE1 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc21 F SG CYS 210 N CYS 210 1_555 S FE3 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc22 F SG CYS 214 N CYS 214 1_555 T FE4 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
#
_chem_comp.formula           'C28 H58 O9' 
_chem_comp.formula_weight    538.755 
_chem_comp.id                CE1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'O-DODECANYL OCTAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     THESIT 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 CE1 sing 104 n n 
C1 H11 CE1 sing 105 n n 
C1 H12 CE1 sing 106 n n 
C1 H13 CE1 sing 107 n n 
C2 C3 CE1 sing 108 n n 
C2 H21 CE1 sing 109 n n 
C2 H22 CE1 sing 110 n n 
C3 C4 CE1 sing 111 n n 
C3 H31 CE1 sing 112 n n 
C3 H32 CE1 sing 113 n n 
C4 C5 CE1 sing 114 n n 
C4 H41 CE1 sing 115 n n 
C4 H42 CE1 sing 116 n n 
C5 C6 CE1 sing 117 n n 
C5 H51 CE1 sing 118 n n 
C5 H52 CE1 sing 119 n n 
C6 C7 CE1 sing 120 n n 
C6 H61 CE1 sing 121 n n 
C6 H62 CE1 sing 122 n n 
C7 C8 CE1 sing 123 n n 
C7 H71 CE1 sing 124 n n 
C7 H72 CE1 sing 125 n n 
C8 C9 CE1 sing 126 n n 
C8 H81 CE1 sing 127 n n 
C8 H82 CE1 sing 128 n n 
C9 C10 CE1 sing 129 n n 
C9 H91 CE1 sing 130 n n 
C9 H92 CE1 sing 131 n n 
C10 C11 CE1 sing 132 n n 
C10 H101 CE1 sing 133 n n 
C10 H102 CE1 sing 134 n n 
C11 C12 CE1 sing 135 n n 
C11 H111 CE1 sing 136 n n 
C11 H112 CE1 sing 137 n n 
C12 O13 CE1 sing 138 n n 
C12 H121 CE1 sing 139 n n 
C12 H122 CE1 sing 140 n n 
O13 C14 CE1 sing 141 n n 
C14 C15 CE1 sing 142 n n 
C14 H141 CE1 sing 143 n n 
C14 H142 CE1 sing 144 n n 
C15 O16 CE1 sing 145 n n 
C15 H151 CE1 sing 146 n n 
C15 H152 CE1 sing 147 n n 
O16 C17 CE1 sing 148 n n 
C17 C18 CE1 sing 149 n n 
C17 H171 CE1 sing 150 n n 
C17 H172 CE1 sing 151 n n 
C18 O19 CE1 sing 152 n n 
C18 H181 CE1 sing 153 n n 
C18 H182 CE1 sing 154 n n 
O19 C20 CE1 sing 155 n n 
C20 C21 CE1 sing 156 n n 
C20 H201 CE1 sing 157 n n 
C20 H202 CE1 sing 158 n n 
C21 O22 CE1 sing 159 n n 
C21 H211 CE1 sing 160 n n 
C21 H212 CE1 sing 161 n n 
O22 C23 CE1 sing 162 n n 
C23 C24 CE1 sing 163 n n 
C23 H231 CE1 sing 164 n n 
C23 H232 CE1 sing 165 n n 
C24 O25 CE1 sing 166 n n 
C24 H241 CE1 sing 167 n n 
C24 H242 CE1 sing 168 n n 
O25 C26 CE1 sing 169 n n 
C26 C27 CE1 sing 170 n n 
C26 H261 CE1 sing 171 n n 
C26 H262 CE1 sing 172 n n 
C27 O28 CE1 sing 173 n n 
C27 H271 CE1 sing 174 n n 
C27 H272 CE1 sing 175 n n 
O28 C29 CE1 sing 176 n n 
C29 C30 CE1 sing 177 n n 
C29 H291 CE1 sing 178 n n 
C29 H292 CE1 sing 179 n n 
C30 O31 CE1 sing 180 n n 
C30 H301 CE1 sing 181 n n 
C30 H302 CE1 sing 182 n n 
O31 C32 CE1 sing 183 n n 
C32 C33 CE1 sing 184 n n 
C32 H321 CE1 sing 185 n n 
C32 H322 CE1 sing 186 n n 
C33 O34 CE1 sing 187 n n 
C33 H331 CE1 sing 188 n n 
C33 H332 CE1 sing 189 n n 
O34 C35 CE1 sing 190 n n 
C35 C36 CE1 sing 191 n n 
C35 H351 CE1 sing 192 n n 
C35 H352 CE1 sing 193 n n 
C36 O37 CE1 sing 194 n n 
C36 H361 CE1 sing 195 n n 
C36 H362 CE1 sing 196 n n 
O37 H37 CE1 sing 197 n n 
#
_atom_sites.entry_id                     1KFY 
_atom_sites.fract_transf_matrix[1][1]    0.0104 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00726 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00369 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 OAA A 1 702 3 OAA OAA . 
J 6 FAD A 1 703 1 FAD FAD . 
K 7 FES B 1 244 1 FES FES . 
L 8 F3S B 1 245 1 F3S F3S . 
M 9 SF4 B 1 246 1 SF4 FS4 . 
N 10 BRS B 1 700 2 BRS DNP . 
O 11 CE1 D 1 710 5 CE1 CE1 . 
P 5 OAA M 1 802 3 OAA OAA . 
Q 6 FAD M 1 803 1 FAD FAD . 
R 7 FES N 1 244 1 FES FES . 
S 8 F3S N 1 245 1 F3S F3S . 
T 9 SF4 N 1 246 1 SF4 FS4 . 
U 10 BRS N 1 800 2 BRS DNP . 
V 11 CE1 O 1 811 6 CE1 CE1 . 
W 11 CE1 P 1 810 4 CE1 CE1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CE1 . . . W 11 41.946 0.018 -61.295 1 76.12 ? C1 CE1 810 P 1 
HETATM 2 C C2 CE1 . . . W 11 41.898 -0.247 -59.872 1 76.12 ? C2 CE1 810 P 1 
HETATM 3 C C3 CE1 . . . W 11 40.606 -0.83 -59.664 1 76.12 ? C3 CE1 810 P 1 
HETATM 4 C C4 CE1 . . . W 11 40.546 -1.562 -58.426 1 76.12 ? C4 CE1 810 P 1 
HETATM 5 C C5 CE1 . . . W 11 39.44 -2.538 -58.46 1 76.12 ? C5 CE1 810 P 1 
HETATM 6 C C6 CE1 . . . W 11 39.442 -3.242 -57.159 1 76.12 ? C6 CE1 810 P 1 
HETATM 7 C C7 CE1 . . . W 11 38.093 -3.676 -56.799 1 76.12 ? C7 CE1 810 P 1 
HETATM 8 C C8 CE1 . . . W 11 38.109 -4.397 -55.546 1 76.12 ? C8 CE1 810 P 1 
HETATM 9 C C9 CE1 . . . W 11 36.833 -4.254 -54.898 1 76.12 ? C9 CE1 810 P 1 
HETATM 10 C C10 CE1 . . . W 11 36.983 -4.579 -53.482 1 76.12 ? C10 CE1 810 P 1 
HETATM 11 C C11 CE1 . . . W 11 36.472 -3.477 -52.635 1 76.12 ? C11 CE1 810 P 1 
HETATM 12 C C12 CE1 . . . W 11 36.645 -3.748 -51.191 1 76.12 ? C12 CE1 810 P 1 
HETATM 13 O O13 CE1 . . . W 11 36.17 -2.813 -50.166 1 76.12 ? O13 CE1 810 P 1 
HETATM 14 C C14 CE1 . . . W 11 37.077 -2.826 -49.064 1 76.12 ? C14 CE1 810 P 1 
HETATM 15 C C15 CE1 . . . W 11 36.788 -1.966 -47.852 1 76.12 ? C15 CE1 810 P 1 
HETATM 16 O O16 CE1 . . . W 11 36.856 -2.567 -46.559 1 76.12 ? O16 CE1 810 P 1 
HETATM 17 C C17 CE1 . . . W 11 35.549 -3.028 -46.223 1 76.12 ? C17 CE1 810 P 1 
HETATM 18 C C18 CE1 . . . W 11 35.153 -4.494 -46.493 1 76.12 ? C18 CE1 810 P 1 
HETATM 19 O O19 CE1 . . . W 11 33.784 -4.881 -46.389 1 76.12 ? O19 CE1 810 P 1 
HETATM 20 C C20 CE1 . . . W 11 33.259 -4.766 -47.706 1 76.12 ? C20 CE1 810 P 1 
HETATM 21 C C21 CE1 . . . W 11 32.722 -3.39 -48.121 1 76.12 ? C21 CE1 810 P 1 
HETATM 22 O O22 CE1 . . . W 11 32.083 -3.179 -49.389 1 76.12 ? O22 CE1 810 P 1 
HETATM 23 C C23 CE1 . . . W 11 33.076 -2.955 -50.43 1 76.12 ? C23 CE1 810 P 1 
HETATM 24 C C24 CE1 . . . W 11 33.332 -1.578 -51.041 1 76.12 ? C24 CE1 810 P 1 
HETATM 25 O O25 CE1 . . . W 11 33.866 -1.475 -52.347 1 76.12 ? O25 CE1 810 P 1 
HETATM 26 C C26 CE1 . . . W 11 32.836 -1.398 -53.28 1 76.12 ? C26 CE1 810 P 1 
HETATM 27 C C27 CE1 . . . W 11 33.067 -1.168 -54.79 1 76.12 ? C27 CE1 810 P 1 
HETATM 28 O O28 CE1 . . . W 11 34.399 -0.779 -55.255 1 76.12 ? O28 CE1 810 P 1 
HETATM 29 C C29 CE1 . . . W 11 34.24 -0.548 -56.739 1 76.12 ? C29 CE1 810 P 1 
HETATM 30 C C30 CE1 . . . W 11 35.418 0.117 -57.618 1 76.12 ? C30 CE1 810 P 1 
HETATM 31 O O31 CE1 . . . W 11 35.109 1.275 -58.46 1 76.12 ? O31 CE1 810 P 1 
HETATM 32 C C32 CE1 . . . W 11 36.405 1.829 -58.851 1 76.12 ? C32 CE1 810 P 1 
HETATM 33 C C33 CE1 . . . W 11 36.698 2.165 -60.332 1 76.12 ? C33 CE1 810 P 1 
HETATM 34 O O34 CE1 . . . W 11 37.927 2.877 -60.6 1 76.12 ? O34 CE1 810 P 1 
HETATM 35 C C35 CE1 . . . W 11 37.771 3.78 -61.739 1 76.12 ? C35 CE1 810 P 1 
HETATM 36 C C36 CE1 . . . W 11 38.11 5.325 -61.511 1 76.12 ? C36 CE1 810 P 1 
HETATM 37 O O37 CE1 . . . W 11 38.808 6.171 -62.512 1 76.12 ? O37 CE1 810 P 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           37 
#