data_1KFY # _model_server_result.job_id 8NA5859XfjZYoXlSktEzYQ _model_server_result.datetime_utc '2024-10-12 12:25:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kfy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":811}' # _entry.id 1KFY # _exptl.entry_id 1KFY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 538.755 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'O-DODECANYL OCTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KFY _cell.length_a 96.147 _cell.length_b 137.814 _cell.length_c 270.986 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KFY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PQS octameric 8 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O 1 1 E,F,G,H,P,Q,R,S,T,U,V,W 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 O N N ? 11 V N N ? 11 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 45 A HIS 44 1_555 J C8M FAD . A FAD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? covale ? covale2 E NE2 HIS 45 M HIS 44 1_555 Q C8M FAD . M FAD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? metalc ? metalc1 B SG CYS 57 B CYS 57 1_555 K FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc2 B SG CYS 62 B CYS 62 1_555 K FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc3 B SG CYS 65 B CYS 65 1_555 K FE1 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 B SG CYS 77 B CYS 77 1_555 K FE1 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc5 B SG CYS 148 B CYS 148 1_555 M FE2 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc6 B SG CYS 151 B CYS 151 1_555 M FE1 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc7 B SG CYS 154 B CYS 154 1_555 M FE3 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc8 B SG CYS 158 B CYS 158 1_555 L FE4 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc9 B SG CYS 204 B CYS 204 1_555 L FE1 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc10 B SG CYS 210 B CYS 210 1_555 L FE3 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc11 B SG CYS 214 B CYS 214 1_555 M FE4 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc12 F SG CYS 57 N CYS 57 1_555 R FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc13 F SG CYS 62 N CYS 62 1_555 R FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc14 F SG CYS 65 N CYS 65 1_555 R FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc15 F SG CYS 77 N CYS 77 1_555 R FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc16 F SG CYS 148 N CYS 148 1_555 T FE2 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc17 F SG CYS 151 N CYS 151 1_555 T FE1 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc18 F SG CYS 154 N CYS 154 1_555 T FE3 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc19 F SG CYS 158 N CYS 158 1_555 S FE4 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc20 F SG CYS 204 N CYS 204 1_555 S FE1 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc21 F SG CYS 210 N CYS 210 1_555 S FE3 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc22 F SG CYS 214 N CYS 214 1_555 T FE4 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? # _chem_comp.formula 'C28 H58 O9' _chem_comp.formula_weight 538.755 _chem_comp.id CE1 _chem_comp.mon_nstd_flag . _chem_comp.name 'O-DODECANYL OCTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms THESIT # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CE1 sing 104 n n C1 H11 CE1 sing 105 n n C1 H12 CE1 sing 106 n n C1 H13 CE1 sing 107 n n C2 C3 CE1 sing 108 n n C2 H21 CE1 sing 109 n n C2 H22 CE1 sing 110 n n C3 C4 CE1 sing 111 n n C3 H31 CE1 sing 112 n n C3 H32 CE1 sing 113 n n C4 C5 CE1 sing 114 n n C4 H41 CE1 sing 115 n n C4 H42 CE1 sing 116 n n C5 C6 CE1 sing 117 n n C5 H51 CE1 sing 118 n n C5 H52 CE1 sing 119 n n C6 C7 CE1 sing 120 n n C6 H61 CE1 sing 121 n n C6 H62 CE1 sing 122 n n C7 C8 CE1 sing 123 n n C7 H71 CE1 sing 124 n n C7 H72 CE1 sing 125 n n C8 C9 CE1 sing 126 n n C8 H81 CE1 sing 127 n n C8 H82 CE1 sing 128 n n C9 C10 CE1 sing 129 n n C9 H91 CE1 sing 130 n n C9 H92 CE1 sing 131 n n C10 C11 CE1 sing 132 n n C10 H101 CE1 sing 133 n n C10 H102 CE1 sing 134 n n C11 C12 CE1 sing 135 n n C11 H111 CE1 sing 136 n n C11 H112 CE1 sing 137 n n C12 O13 CE1 sing 138 n n C12 H121 CE1 sing 139 n n C12 H122 CE1 sing 140 n n O13 C14 CE1 sing 141 n n C14 C15 CE1 sing 142 n n C14 H141 CE1 sing 143 n n C14 H142 CE1 sing 144 n n C15 O16 CE1 sing 145 n n C15 H151 CE1 sing 146 n n C15 H152 CE1 sing 147 n n O16 C17 CE1 sing 148 n n C17 C18 CE1 sing 149 n n C17 H171 CE1 sing 150 n n C17 H172 CE1 sing 151 n n C18 O19 CE1 sing 152 n n C18 H181 CE1 sing 153 n n C18 H182 CE1 sing 154 n n O19 C20 CE1 sing 155 n n C20 C21 CE1 sing 156 n n C20 H201 CE1 sing 157 n n C20 H202 CE1 sing 158 n n C21 O22 CE1 sing 159 n n C21 H211 CE1 sing 160 n n C21 H212 CE1 sing 161 n n O22 C23 CE1 sing 162 n n C23 C24 CE1 sing 163 n n C23 H231 CE1 sing 164 n n C23 H232 CE1 sing 165 n n C24 O25 CE1 sing 166 n n C24 H241 CE1 sing 167 n n C24 H242 CE1 sing 168 n n O25 C26 CE1 sing 169 n n C26 C27 CE1 sing 170 n n C26 H261 CE1 sing 171 n n C26 H262 CE1 sing 172 n n C27 O28 CE1 sing 173 n n C27 H271 CE1 sing 174 n n C27 H272 CE1 sing 175 n n O28 C29 CE1 sing 176 n n C29 C30 CE1 sing 177 n n C29 H291 CE1 sing 178 n n C29 H292 CE1 sing 179 n n C30 O31 CE1 sing 180 n n C30 H301 CE1 sing 181 n n C30 H302 CE1 sing 182 n n O31 C32 CE1 sing 183 n n C32 C33 CE1 sing 184 n n C32 H321 CE1 sing 185 n n C32 H322 CE1 sing 186 n n C33 O34 CE1 sing 187 n n C33 H331 CE1 sing 188 n n C33 H332 CE1 sing 189 n n O34 C35 CE1 sing 190 n n C35 C36 CE1 sing 191 n n C35 H351 CE1 sing 192 n n C35 H352 CE1 sing 193 n n C36 O37 CE1 sing 194 n n C36 H361 CE1 sing 195 n n C36 H362 CE1 sing 196 n n O37 H37 CE1 sing 197 n n # _atom_sites.entry_id 1KFY _atom_sites.fract_transf_matrix[1][1] 0.0104 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 OAA A 1 702 3 OAA OAA . J 6 FAD A 1 703 1 FAD FAD . K 7 FES B 1 244 1 FES FES . L 8 F3S B 1 245 1 F3S F3S . M 9 SF4 B 1 246 1 SF4 FS4 . N 10 BRS B 1 700 2 BRS DNP . O 11 CE1 D 1 710 5 CE1 CE1 . P 5 OAA M 1 802 3 OAA OAA . Q 6 FAD M 1 803 1 FAD FAD . R 7 FES N 1 244 1 FES FES . S 8 F3S N 1 245 1 F3S F3S . T 9 SF4 N 1 246 1 SF4 FS4 . U 10 BRS N 1 800 2 BRS DNP . V 11 CE1 O 1 811 6 CE1 CE1 . W 11 CE1 P 1 810 4 CE1 CE1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CE1 . . . V 11 58.212 -33.019 -45.34 1 76.12 ? C1 CE1 811 O 1 HETATM 2 C C2 CE1 . . . V 11 59.468 -33.132 -46.058 1 76.12 ? C2 CE1 811 O 1 HETATM 3 C C3 CE1 . . . V 11 59.313 -32.326 -47.244 1 76.12 ? C3 CE1 811 O 1 HETATM 4 C C4 CE1 . . . V 11 60.172 -32.786 -48.313 1 76.12 ? C4 CE1 811 O 1 HETATM 5 C C5 CE1 . . . V 11 60.365 -31.715 -49.314 1 76.12 ? C5 CE1 811 O 1 HETATM 6 C C6 CE1 . . . V 11 60.493 -32.306 -50.673 1 76.12 ? C6 CE1 811 O 1 HETATM 7 C C7 CE1 . . . V 11 60.923 -31.29 -51.636 1 76.12 ? C7 CE1 811 O 1 HETATM 8 C C8 CE1 . . . V 11 60.855 -31.814 -52.974 1 76.12 ? C8 CE1 811 O 1 HETATM 9 C C9 CE1 . . . V 11 60.416 -30.804 -53.909 1 76.12 ? C9 CE1 811 O 1 HETATM 10 C C10 CE1 . . . V 11 59.319 -31.37 -54.702 1 76.12 ? C10 CE1 811 O 1 HETATM 11 C C11 CE1 . . . V 11 59.021 -30.562 -55.884 1 76.12 ? C11 CE1 811 O 1 HETATM 12 C C12 CE1 . . . V 11 58.047 -31.217 -56.763 1 76.12 ? C12 CE1 811 O 1 HETATM 13 O O13 CE1 . . . V 11 57.588 -30.559 -57.993 1 76.12 ? O13 CE1 811 O 1 HETATM 14 C C14 CE1 . . . V 11 58.368 -31.023 -59.137 1 76.12 ? C14 CE1 811 O 1 HETATM 15 C C15 CE1 . . . V 11 58.022 -30.523 -60.548 1 76.12 ? C15 CE1 811 O 1 HETATM 16 O O16 CE1 . . . V 11 58.697 -31.055 -61.695 1 76.12 ? O16 CE1 811 O 1 HETATM 17 C C17 CE1 . . . V 11 57.923 -32.131 -62.291 1 76.12 ? C17 CE1 811 O 1 HETATM 18 C C18 CE1 . . . V 11 56.621 -31.911 -63.132 1 76.12 ? C18 CE1 811 O 1 HETATM 19 O O19 CE1 . . . V 11 55.848 -33.034 -63.658 1 76.12 ? O19 CE1 811 O 1 HETATM 20 C C20 CE1 . . . V 11 55.695 -34.009 -62.646 1 76.12 ? C20 CE1 811 O 1 HETATM 21 C C21 CE1 . . . V 11 54.649 -33.792 -61.556 1 76.12 ? C21 CE1 811 O 1 HETATM 22 O O22 CE1 . . . V 11 54.574 -34.764 -60.496 1 76.12 ? O22 CE1 811 O 1 HETATM 23 C C23 CE1 . . . V 11 55.096 -34.172 -59.265 1 76.12 ? C23 CE1 811 O 1 HETATM 24 C C24 CE1 . . . V 11 55.893 -35.044 -58.236 1 76.12 ? C24 CE1 811 O 1 HETATM 25 O O25 CE1 . . . V 11 56.353 -34.457 -56.963 1 76.12 ? O25 CE1 811 O 1 HETATM 26 C C26 CE1 . . . V 11 57.075 -35.511 -56.205 1 76.12 ? C26 CE1 811 O 1 HETATM 27 C C27 CE1 . . . V 11 57.681 -35.203 -54.774 1 76.12 ? C27 CE1 811 O 1 HETATM 28 O O28 CE1 . . . V 11 56.972 -35.619 -53.54 1 76.12 ? O28 CE1 811 O 1 HETATM 29 C C29 CE1 . . . V 11 57.667 -35.09 -52.353 1 76.12 ? C29 CE1 811 O 1 HETATM 30 C C30 CE1 . . . V 11 57.125 -35.436 -50.934 1 76.12 ? C30 CE1 811 O 1 HETATM 31 O O31 CE1 . . . V 11 57.565 -34.671 -49.79 1 76.12 ? O31 CE1 811 O 1 HETATM 32 C C32 CE1 . . . V 11 57.157 -35.352 -48.583 1 76.12 ? C32 CE1 811 O 1 HETATM 33 C C33 CE1 . . . V 11 55.868 -34.911 -47.908 1 76.12 ? C33 CE1 811 O 1 HETATM 34 O O34 CE1 . . . V 11 55.498 -35.522 -46.675 1 76.12 ? O34 CE1 811 O 1 HETATM 35 C C35 CE1 . . . V 11 54.341 -36.351 -46.877 1 76.12 ? C35 CE1 811 O 1 HETATM 36 C C36 CE1 . . . V 11 54.413 -37.888 -46.558 1 76.12 ? C36 CE1 811 O 1 HETATM 37 O O37 CE1 . . . V 11 55.685 -38.595 -46.612 1 76.12 ? O37 CE1 811 O 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #