data_1KGQ
#
_model_server_result.job_id            XWbiQY0P-KRrIm-q7ifkvA 
_model_server_result.datetime_utc      '2025-08-31 02:34:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1kgq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    1KGQ 
#
_exptl.entry_id    1KGQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              850.557 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SUCCINAMIDE-COA 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1KGQ 
_cell.length_a            95.84 
_cell.length_b            95.84 
_cell.length_c            72.64 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KGQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_765 -y+2,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 143.76 82.999875 0 
3 'crystal symmetry operation' 3_675 -x+y+1,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 165.999749 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C25 H41 N8 O19 P3' 
_chem_comp.formula_weight    850.557 
_chem_comp.id                SCO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SUCCINAMIDE-COA 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 SCO doub 301 n y 
N1 C6 SCO sing 302 n y 
C2 N3 SCO sing 303 n y 
C2 HC2 SCO sing 304 n n 
N3 C4 SCO doub 305 n y 
C4 C5 SCO sing 306 n y 
C4 N9 SCO sing 307 n y 
C5 C6 SCO doub 308 n y 
C5 N7 SCO sing 309 n y 
C6 N6 SCO sing 310 n n 
N6 HN61 SCO sing 311 n n 
N6 HN62 SCO sing 312 n n 
N7 C8 SCO doub 313 n y 
C8 N9 SCO sing 314 n y 
C8 HC8 SCO sing 315 n n 
N9 C1' SCO sing 316 n n 
C1' C2' SCO sing 317 n n 
C1' O4 SCO sing 318 n n 
C1' HC1 SCO sing 319 n n 
C2' O2 SCO sing 320 n n 
C2' C3' SCO sing 321 n n 
C2' HC2' SCO sing 322 n n 
O2 H02 SCO sing 323 n n 
C3' O3 SCO sing 324 n n 
C3' C4' SCO sing 325 n n 
C3' HC3 SCO sing 326 n n 
O3 P3 SCO sing 327 n n 
P3 O7 SCO sing 328 n n 
P3 O8 SCO sing 329 n n 
P3 O9 SCO doub 330 n n 
O7 H07 SCO sing 331 n n 
O8 HO8 SCO sing 332 n n 
C4' O4 SCO sing 333 n n 
C4' C5' SCO sing 334 n n 
C4' HC4 SCO sing 335 n n 
C5' O5 SCO sing 336 n n 
C5' HC51 SCO sing 337 n n 
C5' HC52 SCO sing 338 n n 
O5 P1 SCO sing 339 n n 
P1 O1' SCO sing 340 n n 
P1 O2' SCO doub 341 n n 
P1 O3' SCO sing 342 n n 
O1' H01 SCO sing 343 n n 
O3' P2 SCO sing 344 n n 
P2 O4' SCO doub 345 n n 
P2 O5' SCO sing 346 n n 
P2 O6' SCO sing 347 n n 
O5' HO5 SCO sing 348 n n 
O6' C11 SCO sing 349 n n 
C11 C12 SCO sing 350 n n 
C11 H111 SCO sing 351 n n 
C11 H112 SCO sing 352 n n 
C12 C13 SCO sing 353 n n 
C12 C14 SCO sing 354 n n 
C12 C15 SCO sing 355 n n 
C13 H131 SCO sing 356 n n 
C13 H132 SCO sing 357 n n 
C13 H133 SCO sing 358 n n 
C14 H141 SCO sing 359 n n 
C14 H142 SCO sing 360 n n 
C14 H143 SCO sing 361 n n 
C15 O10 SCO sing 362 n n 
C15 C9 SCO sing 363 n n 
C15 H15 SCO sing 364 n n 
O10 H10 SCO sing 365 n n 
C9 O11 SCO doub 366 n n 
C9 N8 SCO sing 367 n n 
N8 C27 SCO sing 368 n n 
N8 HN8 SCO sing 369 n n 
C27 C26 SCO sing 370 n n 
C27 H271 SCO sing 371 n n 
C27 H272 SCO sing 372 n n 
C26 C25 SCO sing 373 n n 
C26 H261 SCO sing 374 n n 
C26 H262 SCO sing 375 n n 
C25 O12 SCO doub 376 n n 
C25 N34 SCO sing 377 n n 
N34 C33 SCO sing 378 n n 
N34 H34 SCO sing 379 n n 
C33 C32 SCO sing 380 n n 
C33 H331 SCO sing 381 n n 
C33 H332 SCO sing 382 n n 
C32 N31 SCO sing 383 n n 
C32 H321 SCO sing 384 n n 
C32 H322 SCO sing 385 n n 
N31 C41 SCO sing 386 n n 
N31 H31 SCO sing 387 n n 
C42 C41 SCO sing 388 n n 
C42 C43 SCO sing 389 n n 
C42 H421 SCO sing 390 n n 
C42 H422 SCO sing 391 n n 
C41 O41 SCO doub 392 n n 
C43 C44 SCO sing 393 n n 
C43 H431 SCO sing 394 n n 
C43 H432 SCO sing 395 n n 
C44 O44 SCO sing 396 n n 
C44 O45 SCO doub 397 n n 
O44 H44 SCO sing 398 n n 
#
_atom_sites.entry_id                     1KGQ 
_atom_sites.fract_transf_matrix[1][1]    0.010434 
_atom_sites.fract_transf_matrix[1][2]    0.006024 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012048 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013767 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NPI A 1 301 1 NPI 2AP . 
C 3 SCO A 1 302 2 SCO ASC . 
D 4 HOH A 1 303 1 HOH HOH . 
D 4 HOH A 2 304 2 HOH HOH . 
D 4 HOH A 3 305 3 HOH HOH . 
D 4 HOH A 4 306 4 HOH HOH . 
D 4 HOH A 5 307 5 HOH HOH . 
D 4 HOH A 6 308 6 HOH HOH . 
D 4 HOH A 7 309 7 HOH HOH . 
D 4 HOH A 8 310 9 HOH HOH . 
D 4 HOH A 9 311 10 HOH HOH . 
D 4 HOH A 10 312 11 HOH HOH . 
D 4 HOH A 11 313 12 HOH HOH . 
D 4 HOH A 12 314 13 HOH HOH . 
D 4 HOH A 13 315 14 HOH HOH . 
D 4 HOH A 14 316 15 HOH HOH . 
D 4 HOH A 15 317 16 HOH HOH . 
D 4 HOH A 16 318 17 HOH HOH . 
D 4 HOH A 17 319 18 HOH HOH . 
D 4 HOH A 18 320 19 HOH HOH . 
D 4 HOH A 19 321 20 HOH HOH . 
D 4 HOH A 20 322 21 HOH HOH . 
D 4 HOH A 21 323 22 HOH HOH . 
D 4 HOH A 22 324 23 HOH HOH . 
D 4 HOH A 23 325 24 HOH HOH . 
D 4 HOH A 24 326 25 HOH HOH . 
D 4 HOH A 25 327 26 HOH HOH . 
D 4 HOH A 26 328 28 HOH HOH . 
D 4 HOH A 27 329 29 HOH HOH . 
D 4 HOH A 28 330 30 HOH HOH . 
D 4 HOH A 29 331 31 HOH HOH . 
D 4 HOH A 30 332 32 HOH HOH . 
D 4 HOH A 31 333 33 HOH HOH . 
D 4 HOH A 32 334 34 HOH HOH . 
D 4 HOH A 33 335 35 HOH HOH . 
D 4 HOH A 34 336 36 HOH HOH . 
D 4 HOH A 35 337 37 HOH HOH . 
D 4 HOH A 36 338 38 HOH HOH . 
D 4 HOH A 37 339 39 HOH HOH . 
D 4 HOH A 38 340 40 HOH HOH . 
D 4 HOH A 39 341 41 HOH HOH . 
D 4 HOH A 40 342 42 HOH HOH . 
D 4 HOH A 41 343 43 HOH HOH . 
D 4 HOH A 42 344 45 HOH HOH . 
D 4 HOH A 43 345 46 HOH HOH . 
D 4 HOH A 44 346 47 HOH HOH . 
D 4 HOH A 45 347 48 HOH HOH . 
D 4 HOH A 46 348 49 HOH HOH . 
D 4 HOH A 47 349 50 HOH HOH . 
D 4 HOH A 48 350 51 HOH HOH . 
D 4 HOH A 49 351 52 HOH HOH . 
D 4 HOH A 50 352 54 HOH HOH . 
D 4 HOH A 51 353 56 HOH HOH . 
D 4 HOH A 52 354 57 HOH HOH . 
D 4 HOH A 53 355 58 HOH HOH . 
D 4 HOH A 54 356 59 HOH HOH . 
D 4 HOH A 55 357 60 HOH HOH . 
D 4 HOH A 56 358 61 HOH HOH . 
D 4 HOH A 57 359 62 HOH HOH . 
D 4 HOH A 58 360 63 HOH HOH . 
D 4 HOH A 59 361 64 HOH HOH . 
D 4 HOH A 60 362 65 HOH HOH . 
D 4 HOH A 61 363 67 HOH HOH . 
D 4 HOH A 62 364 68 HOH HOH . 
D 4 HOH A 63 365 71 HOH HOH . 
D 4 HOH A 64 366 72 HOH HOH . 
D 4 HOH A 65 367 73 HOH HOH . 
D 4 HOH A 66 368 75 HOH HOH . 
D 4 HOH A 67 369 76 HOH HOH . 
D 4 HOH A 68 370 79 HOH HOH . 
D 4 HOH A 69 371 80 HOH HOH . 
D 4 HOH A 70 372 81 HOH HOH . 
D 4 HOH A 71 373 82 HOH HOH . 
D 4 HOH A 72 374 86 HOH HOH . 
D 4 HOH A 73 375 89 HOH HOH . 
D 4 HOH A 74 376 90 HOH HOH . 
D 4 HOH A 75 377 91 HOH HOH . 
D 4 HOH A 76 378 92 HOH HOH . 
D 4 HOH A 77 379 93 HOH HOH . 
D 4 HOH A 78 380 96 HOH HOH . 
D 4 HOH A 79 381 97 HOH HOH . 
D 4 HOH A 80 382 99 HOH HOH . 
D 4 HOH A 81 383 100 HOH HOH . 
D 4 HOH A 82 384 101 HOH HOH . 
D 4 HOH A 83 385 102 HOH HOH . 
D 4 HOH A 84 386 103 HOH HOH . 
D 4 HOH A 85 387 104 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 SCO . . . C 3 57.2 86.272 20.09 1 35.92 ? N1 SCO 302 A 1 
HETATM 2 C C2 SCO . . . C 3 57.187 86.404 21.448 1 33.35 ? C2 SCO 302 A 1 
HETATM 3 N N3 SCO . . . C 3 57.824 87.232 22.173 1 35.19 ? N3 SCO 302 A 1 
HETATM 4 C C4 SCO . . . C 3 58.597 88.039 21.43 1 28.45 ? C4 SCO 302 A 1 
HETATM 5 C C5 SCO . . . C 3 58.736 88.079 20.051 1 24.68 ? C5 SCO 302 A 1 
HETATM 6 C C6 SCO . . . C 3 57.965 87.125 19.334 1 34.37 ? C6 SCO 302 A 1 
HETATM 7 N N6 SCO . . . C 3 57.947 87.008 17.998 1 23.19 ? N6 SCO 302 A 1 
HETATM 8 N N7 SCO . . . C 3 59.622 89.051 19.693 1 34.78 ? N7 SCO 302 A 1 
HETATM 9 C C8 SCO . . . C 3 59.995 89.582 20.837 1 29.76 ? C8 SCO 302 A 1 
HETATM 10 N N9 SCO . . . C 3 59.381 89.004 21.912 1 25.96 ? N9 SCO 302 A 1 
HETATM 11 C C1' SCO . . . C 3 59.578 89.404 23.28 1 23.61 ? C1' SCO 302 A 1 
HETATM 12 C C2' SCO . . . C 3 60.917 88.941 23.758 1 26.64 ? C2' SCO 302 A 1 
HETATM 13 O O2 SCO . . . C 3 60.85 87.577 24.23 1 33.38 ? O2 SCO 302 A 1 
HETATM 14 C C3' SCO . . . C 3 61.275 89.924 24.874 1 29.23 ? C3' SCO 302 A 1 
HETATM 15 O O3 SCO . . . C 3 60.767 89.489 26.151 1 46.01 ? O3 SCO 302 A 1 
HETATM 16 P P3 SCO . . . C 3 61.102 90.353 27.416 1 45.35 ? P3 SCO 302 A 1 
HETATM 17 O O7 SCO . . . C 3 61.432 91.737 26.983 1 36.69 ? O7 SCO 302 A 1 
HETATM 18 O O8 SCO . . . C 3 62.16 89.654 28.18 1 100 ? O8 SCO 302 A 1 
HETATM 19 O O9 SCO . . . C 3 59.91 90.395 28.298 1 34.39 ? O9 SCO 302 A 1 
HETATM 20 C C4' SCO . . . C 3 60.653 91.177 24.276 1 37.77 ? C4' SCO 302 A 1 
HETATM 21 O O4 SCO . . . C 3 59.625 90.797 23.343 1 29.24 ? O4 SCO 302 A 1 
HETATM 22 C C5' SCO . . . C 3 61.667 91.935 23.448 1 25.22 ? C5' SCO 302 A 1 
HETATM 23 O O5 SCO . . . C 3 62.092 91.035 22.389 1 32.12 ? O5 SCO 302 A 1 
HETATM 24 P P1 SCO . . . C 3 63.508 91.211 21.654 1 27.46 ? P1 SCO 302 A 1 
HETATM 25 O O1' SCO . . . C 3 63.955 89.959 20.992 1 33.39 ? O1' SCO 302 A 1 
HETATM 26 O O2' SCO . . . C 3 64.515 91.743 22.601 1 38.21 ? O2' SCO 302 A 1 
HETATM 27 O O3' SCO . . . C 3 63.229 92.324 20.6 1 30.52 ? O3' SCO 302 A 1 
HETATM 28 P P2 SCO . . . C 3 63.32 92.457 18.941 1 35.81 ? P2 SCO 302 A 1 
HETATM 29 O O4' SCO . . . C 3 64.201 91.442 18.338 1 35.42 ? O4' SCO 302 A 1 
HETATM 30 O O5' SCO . . . C 3 63.718 93.82 18.545 1 38.85 ? O5' SCO 302 A 1 
HETATM 31 O O6' SCO . . . C 3 61.772 92.195 18.594 1 30.99 ? O6' SCO 302 A 1 
HETATM 32 C C11 SCO . . . C 3 61.527 90.847 18.027 1 27.57 ? C11 SCO 302 A 1 
HETATM 33 C C12 SCO . . . C 3 60.76 90.851 16.696 1 44.5 ? C12 SCO 302 A 1 
HETATM 34 C C13 SCO . . . C 3 59.389 91.503 16.901 1 20.73 ? C13 SCO 302 A 1 
HETATM 35 C C14 SCO . . . C 3 61.479 91.627 15.597 1 12.18 ? C14 SCO 302 A 1 
HETATM 36 C C15 SCO . . . C 3 60.575 89.44 16.231 1 13.58 ? C15 SCO 302 A 1 
HETATM 37 O O10 SCO . . . C 3 59.918 88.639 17.229 1 27.7 ? O10 SCO 302 A 1 
HETATM 38 C C9 SCO . . . C 3 59.712 89.527 15.007 1 28.22 ? C9 SCO 302 A 1 
HETATM 39 O O11 SCO . . . C 3 58.487 89.514 15.093 1 40.89 ? O11 SCO 302 A 1 
HETATM 40 N N8 SCO . . . C 3 60.362 89.613 13.861 1 22.78 ? N8 SCO 302 A 1 
HETATM 41 C C27 SCO . . . C 3 59.679 89.66 12.571 1 43.08 ? C27 SCO 302 A 1 
HETATM 42 C C26 SCO . . . C 3 59.519 88.269 11.979 1 16.48 ? C26 SCO 302 A 1 
HETATM 43 C C25 SCO . . . C 3 58.932 88.341 10.583 1 41.14 ? C25 SCO 302 A 1 
HETATM 44 O O12 SCO . . . C 3 57.775 88.706 10.397 1 21.79 ? O12 SCO 302 A 1 
HETATM 45 N N34 SCO . . . C 3 59.781 88.022 9.646 1 32.53 ? N34 SCO 302 A 1 
HETATM 46 C C33 SCO . . . C 3 59.41 88.018 8.261 1 54.45 ? C33 SCO 302 A 1 
HETATM 47 C C32 SCO . . . C 3 59.734 86.629 7.751 1 31.02 ? C32 SCO 302 A 1 
HETATM 48 N N31 SCO . . . C 3 60.792 86.638 6.799 1 29.42 ? N31 SCO 302 A 1 
HETATM 49 C C42 SCO . . . C 3 59.148 85.364 5.484 1 28.01 ? C42 SCO 302 A 1 
HETATM 50 C C41 SCO . . . C 3 60.545 86.088 5.586 1 54.02 ? C41 SCO 302 A 1 
HETATM 51 O O41 SCO . . . C 3 61.385 86.123 4.567 1 32.65 ? O41 SCO 302 A 1 
HETATM 52 C C43 SCO . . . C 3 58.738 84.932 4.032 1 39.05 ? C43 SCO 302 A 1 
HETATM 53 C C44 SCO . . . C 3 57.281 84.51 3.812 1 29.85 ? C44 SCO 302 A 1 
HETATM 54 O O44 SCO . . . C 3 56.895 84.531 2.643 1 17.74 ? O44 SCO 302 A 1 
HETATM 55 O O45 SCO . . . C 3 56.548 84.135 4.823 1 18.43 ? O45 SCO 302 A 1 
#
_model_server_stats.io_time_ms              4 
_model_server_stats.parse_time_ms           4 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           405 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           55 
#