data_1KGT # _model_server_result.job_id QKYUo4Z4aSFqK7ard4rY8A _model_server_result.datetime_utc '2025-01-02 17:02:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kgt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 1KGT # _exptl.entry_id 1KGT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 160.168 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PIMELIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1KGT _cell.length_a 95.98 _cell.length_b 95.98 _cell.length_c 73.44 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KGT _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_765 -y+2,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 143.97 83.121118 0 3 'crystal symmetry operation' 3_675 -x+y+1,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 166.242237 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H12 O4' _chem_comp.formula_weight 160.168 _chem_comp.id PML _chem_comp.mon_nstd_flag . _chem_comp.name 'PIMELIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O11 PML doub 260 n n C1 O12 PML sing 261 n n C1 C2 PML sing 262 n n O12 H12 PML sing 263 n n C2 C3 PML sing 264 n n C2 HC21 PML sing 265 n n C2 HC22 PML sing 266 n n C3 C4 PML sing 267 n n C3 HC31 PML sing 268 n n C3 HC32 PML sing 269 n n C4 C5 PML sing 270 n n C4 HC41 PML sing 271 n n C4 HC42 PML sing 272 n n C5 C6 PML sing 273 n n C5 HC51 PML sing 274 n n C5 HC52 PML sing 275 n n C6 C7 PML sing 276 n n C6 HC61 PML sing 277 n n C6 HC62 PML sing 278 n n C7 O71 PML doub 279 n n C7 O72 PML sing 280 n n O72 H72 PML sing 281 n n # _atom_sites.entry_id 1KGT _atom_sites.fract_transf_matrix[1][1] 0.010419 _atom_sites.fract_transf_matrix[1][2] 0.006015 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PML A 1 301 1 PML PIM . C 3 SCA A 1 302 2 SCA SCO . D 4 HOH A 1 303 1 HOH HOH . D 4 HOH A 2 304 2 HOH HOH . D 4 HOH A 3 305 6 HOH HOH . D 4 HOH A 4 306 7 HOH HOH . D 4 HOH A 5 307 9 HOH HOH . D 4 HOH A 6 308 10 HOH HOH . D 4 HOH A 7 309 11 HOH HOH . D 4 HOH A 8 310 12 HOH HOH . D 4 HOH A 9 311 13 HOH HOH . D 4 HOH A 10 312 14 HOH HOH . D 4 HOH A 11 313 15 HOH HOH . D 4 HOH A 12 314 16 HOH HOH . D 4 HOH A 13 315 17 HOH HOH . D 4 HOH A 14 316 18 HOH HOH . D 4 HOH A 15 317 19 HOH HOH . D 4 HOH A 16 318 20 HOH HOH . D 4 HOH A 17 319 21 HOH HOH . D 4 HOH A 18 320 22 HOH HOH . D 4 HOH A 19 321 24 HOH HOH . D 4 HOH A 20 322 25 HOH HOH . D 4 HOH A 21 323 26 HOH HOH . D 4 HOH A 22 324 28 HOH HOH . D 4 HOH A 23 325 29 HOH HOH . D 4 HOH A 24 326 30 HOH HOH . D 4 HOH A 25 327 31 HOH HOH . D 4 HOH A 26 328 32 HOH HOH . D 4 HOH A 27 329 33 HOH HOH . D 4 HOH A 28 330 37 HOH HOH . D 4 HOH A 29 331 38 HOH HOH . D 4 HOH A 30 332 41 HOH HOH . D 4 HOH A 31 333 42 HOH HOH . D 4 HOH A 32 334 43 HOH HOH . D 4 HOH A 33 335 45 HOH HOH . D 4 HOH A 34 336 47 HOH HOH . D 4 HOH A 35 337 48 HOH HOH . D 4 HOH A 36 338 49 HOH HOH . D 4 HOH A 37 339 50 HOH HOH . D 4 HOH A 38 340 51 HOH HOH . D 4 HOH A 39 341 56 HOH HOH . D 4 HOH A 40 342 57 HOH HOH . D 4 HOH A 41 343 58 HOH HOH . D 4 HOH A 42 344 59 HOH HOH . D 4 HOH A 43 345 61 HOH HOH . D 4 HOH A 44 346 62 HOH HOH . D 4 HOH A 45 347 64 HOH HOH . D 4 HOH A 46 348 65 HOH HOH . D 4 HOH A 47 349 66 HOH HOH . D 4 HOH A 48 350 67 HOH HOH . D 4 HOH A 49 351 71 HOH HOH . D 4 HOH A 50 352 72 HOH HOH . D 4 HOH A 51 353 73 HOH HOH . D 4 HOH A 52 354 76 HOH HOH . D 4 HOH A 53 355 79 HOH HOH . D 4 HOH A 54 356 80 HOH HOH . D 4 HOH A 55 357 82 HOH HOH . D 4 HOH A 56 358 86 HOH HOH . D 4 HOH A 57 359 91 HOH HOH . D 4 HOH A 58 360 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PML . . . B 2 62.644 86.988 1.246 1 28.02 ? C1 PML 301 A 1 HETATM 2 O O11 PML . . . B 2 62.628 85.859 0.751 1 17.74 ? O11 PML 301 A 1 HETATM 3 O O12 PML . . . B 2 63.689 87.443 1.886 1 27.88 ? O12 PML 301 A 1 HETATM 4 C C2 PML . . . B 2 61.376 87.819 1.223 1 32.62 ? C2 PML 301 A 1 HETATM 5 C C3 PML . . . B 2 61.415 88.902 0.175 1 11.36 ? C3 PML 301 A 1 HETATM 6 C C4 PML . . . B 2 61.96 88.437 -1.164 1 16.68 ? C4 PML 301 A 1 HETATM 7 C C5 PML . . . B 2 62.145 89.574 -2.18 1 27.32 ? C5 PML 301 A 1 HETATM 8 C C6 PML . . . B 2 62.51 89.067 -3.577 1 36.85 ? C6 PML 301 A 1 HETATM 9 C C7 PML . . . B 2 62.48 90.122 -4.68 1 23.67 ? C7 PML 301 A 1 HETATM 10 O O71 PML . . . B 2 62.194 89.786 -5.833 1 22.85 ? O71 PML 301 A 1 HETATM 11 O O72 PML . . . B 2 62.782 91.369 -4.411 1 20.67 ? O72 PML 301 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #