data_1KGZ
#
_model_server_result.job_id            vhOnVy2jfLjimtRyPjj2XA 
_model_server_result.datetime_utc      '2024-11-15 00:22:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1kgz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":500}' 
#
_entry.id    1KGZ 
#
_exptl.entry_id    1KGZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1KGZ 
_cell.length_a            77.378 
_cell.length_b            81.686 
_cell.length_c            101.68 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KGZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 103 A SER 103 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc2 A O CYS 113 A CYS 113 1_555 C HG HG . A HG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc3 A SG CYS 113 A CYS 113 1_555 C HG HG . A HG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? 
metalc ? metalc4 A OD2 ASP 236 A ASP 236 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc5 A OE1 GLU 237 A GLU 237 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc6 D MN MN . A MN 500 1_555 F O3A PRP . A PRP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc7 D MN MN . A MN 500 1_555 K O HOH . A HOH 868 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc8 D MN MN . A MN 500 1_555 K O HOH . A HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc9 E MN MN . A MN 501 1_555 K O HOH . A HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? 
metalc ? metalc10 E MN MN . A MN 501 1_555 K O HOH . A HOH 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc11 B OG SER 103 B SER 103 1_555 H MN MN . B MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc12 B O CYS 113 B CYS 113 1_555 G HG HG . B HG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? 
metalc ? metalc13 B SG CYS 113 B CYS 113 1_555 G HG HG . B HG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc14 B OD2 ASP 236 B ASP 236 1_555 I MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc15 B OE1 GLU 237 B GLU 237 1_555 H MN MN . B MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc16 B OE1 GLU 237 B GLU 237 1_555 I MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc17 H MN MN . B MN 500 1_555 J O3A PRP . B PRP 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc18 H MN MN . B MN 500 1_555 L O HOH . B HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc19 H MN MN . B MN 500 1_555 L O HOH . B HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc20 I MN MN . B MN 501 1_555 L O HOH . B HOH 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc21 I MN MN . B MN 501 1_555 L O HOH . B HOH 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc22 I MN MN . B MN 501 1_555 L O HOH . B HOH 864 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc23 I MN MN . B MN 501 1_555 L O HOH . B HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1KGZ 
_atom_sites.fract_transf_matrix[1][1]    0.012924 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012242 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009835 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HG A 1 400 400 HG HG . 
D 3 MN A 1 500 500 MN MN . 
E 3 MN A 1 501 501 MN MN . 
F 4 PRP A 1 600 600 PRP PRP . 
G 2 HG B 1 400 400 HG HG . 
H 3 MN B 1 500 500 MN MN . 
I 3 MN B 1 501 501 MN MN . 
J 4 PRP B 1 700 700 PRP PRP . 
K 5 HOH A 1 703 703 HOH HOH . 
K 5 HOH A 2 712 712 HOH HOH . 
K 5 HOH A 3 713 713 HOH HOH . 
K 5 HOH A 4 720 720 HOH HOH . 
K 5 HOH A 5 722 722 HOH HOH . 
K 5 HOH A 6 724 724 HOH HOH . 
K 5 HOH A 7 728 728 HOH HOH . 
K 5 HOH A 8 730 730 HOH HOH . 
K 5 HOH A 9 734 734 HOH HOH . 
K 5 HOH A 10 753 753 HOH HOH . 
K 5 HOH A 11 758 758 HOH HOH . 
K 5 HOH A 12 759 759 HOH HOH . 
K 5 HOH A 13 760 760 HOH HOH . 
K 5 HOH A 14 761 761 HOH HOH . 
K 5 HOH A 15 762 762 HOH HOH . 
K 5 HOH A 16 763 763 HOH HOH . 
K 5 HOH A 17 764 764 HOH HOH . 
K 5 HOH A 18 765 765 HOH HOH . 
K 5 HOH A 19 766 766 HOH HOH . 
K 5 HOH A 20 767 767 HOH HOH . 
K 5 HOH A 21 768 768 HOH HOH . 
K 5 HOH A 22 769 769 HOH HOH . 
K 5 HOH A 23 770 770 HOH HOH . 
K 5 HOH A 24 771 771 HOH HOH . 
K 5 HOH A 25 772 772 HOH HOH . 
K 5 HOH A 26 773 773 HOH HOH . 
K 5 HOH A 27 774 774 HOH HOH . 
K 5 HOH A 28 775 775 HOH HOH . 
K 5 HOH A 29 776 776 HOH HOH . 
K 5 HOH A 30 777 777 HOH HOH . 
K 5 HOH A 31 778 778 HOH HOH . 
K 5 HOH A 32 779 779 HOH HOH . 
K 5 HOH A 33 780 780 HOH HOH . 
K 5 HOH A 34 781 781 HOH HOH . 
K 5 HOH A 35 788 788 HOH HOH . 
K 5 HOH A 36 790 790 HOH HOH . 
K 5 HOH A 37 796 796 HOH HOH . 
K 5 HOH A 38 798 798 HOH HOH . 
K 5 HOH A 39 799 799 HOH HOH . 
K 5 HOH A 40 801 801 HOH HOH . 
K 5 HOH A 41 802 802 HOH HOH . 
K 5 HOH A 42 804 804 HOH HOH . 
K 5 HOH A 43 809 809 HOH HOH . 
K 5 HOH A 44 810 810 HOH HOH . 
K 5 HOH A 45 813 813 HOH HOH . 
K 5 HOH A 46 814 814 HOH HOH . 
K 5 HOH A 47 815 815 HOH HOH . 
K 5 HOH A 48 816 816 HOH HOH . 
K 5 HOH A 49 818 818 HOH HOH . 
K 5 HOH A 50 820 820 HOH HOH . 
K 5 HOH A 51 821 821 HOH HOH . 
K 5 HOH A 52 823 823 HOH HOH . 
K 5 HOH A 53 828 828 HOH HOH . 
K 5 HOH A 54 830 830 HOH HOH . 
K 5 HOH A 55 832 832 HOH HOH . 
K 5 HOH A 56 833 833 HOH HOH . 
K 5 HOH A 57 834 834 HOH HOH . 
K 5 HOH A 58 839 839 HOH HOH . 
K 5 HOH A 59 840 840 HOH HOH . 
K 5 HOH A 60 842 842 HOH HOH . 
K 5 HOH A 61 843 843 HOH HOH . 
K 5 HOH A 62 845 845 HOH HOH . 
K 5 HOH A 63 853 853 HOH HOH . 
K 5 HOH A 64 855 855 HOH HOH . 
K 5 HOH A 65 856 856 HOH HOH . 
K 5 HOH A 66 858 858 HOH HOH . 
K 5 HOH A 67 861 861 HOH HOH . 
K 5 HOH A 68 865 865 HOH HOH . 
K 5 HOH A 69 867 867 HOH HOH . 
K 5 HOH A 70 868 868 HOH HOH . 
K 5 HOH A 71 869 869 HOH HOH . 
K 5 HOH A 72 870 870 HOH HOH . 
K 5 HOH A 73 871 871 HOH HOH . 
K 5 HOH A 74 873 873 HOH HOH . 
K 5 HOH A 75 874 874 HOH HOH . 
K 5 HOH A 76 875 875 HOH HOH . 
K 5 HOH A 77 876 876 HOH HOH . 
K 5 HOH A 78 877 877 HOH HOH . 
K 5 HOH A 79 878 878 HOH HOH . 
K 5 HOH A 80 879 879 HOH HOH . 
K 5 HOH A 81 880 880 HOH HOH . 
K 5 HOH A 82 881 881 HOH HOH . 
K 5 HOH A 83 882 882 HOH HOH . 
K 5 HOH A 84 883 883 HOH HOH . 
K 5 HOH A 85 889 889 HOH HOH . 
K 5 HOH A 86 905 905 HOH HOH . 
K 5 HOH A 87 906 906 HOH HOH . 
K 5 HOH A 88 907 907 HOH HOH . 
K 5 HOH A 89 908 908 HOH HOH . 
L 5 HOH B 1 701 701 HOH HOH . 
L 5 HOH B 2 702 702 HOH HOH . 
L 5 HOH B 3 704 704 HOH HOH . 
L 5 HOH B 4 705 705 HOH HOH . 
L 5 HOH B 5 706 706 HOH HOH . 
L 5 HOH B 6 707 707 HOH HOH . 
L 5 HOH B 7 708 708 HOH HOH . 
L 5 HOH B 8 709 709 HOH HOH . 
L 5 HOH B 9 710 710 HOH HOH . 
L 5 HOH B 10 711 711 HOH HOH . 
L 5 HOH B 11 714 714 HOH HOH . 
L 5 HOH B 12 715 715 HOH HOH . 
L 5 HOH B 13 716 716 HOH HOH . 
L 5 HOH B 14 717 717 HOH HOH . 
L 5 HOH B 15 718 718 HOH HOH . 
L 5 HOH B 16 719 719 HOH HOH . 
L 5 HOH B 17 721 721 HOH HOH . 
L 5 HOH B 18 723 723 HOH HOH . 
L 5 HOH B 19 725 725 HOH HOH . 
L 5 HOH B 20 726 726 HOH HOH . 
L 5 HOH B 21 727 727 HOH HOH . 
L 5 HOH B 22 729 729 HOH HOH . 
L 5 HOH B 23 731 731 HOH HOH . 
L 5 HOH B 24 732 732 HOH HOH . 
L 5 HOH B 25 733 733 HOH HOH . 
L 5 HOH B 26 735 735 HOH HOH . 
L 5 HOH B 27 736 736 HOH HOH . 
L 5 HOH B 28 737 737 HOH HOH . 
L 5 HOH B 29 738 738 HOH HOH . 
L 5 HOH B 30 739 739 HOH HOH . 
L 5 HOH B 31 740 740 HOH HOH . 
L 5 HOH B 32 741 741 HOH HOH . 
L 5 HOH B 33 742 742 HOH HOH . 
L 5 HOH B 34 743 743 HOH HOH . 
L 5 HOH B 35 744 744 HOH HOH . 
L 5 HOH B 36 745 745 HOH HOH . 
L 5 HOH B 37 746 746 HOH HOH . 
L 5 HOH B 38 747 747 HOH HOH . 
L 5 HOH B 39 748 748 HOH HOH . 
L 5 HOH B 40 749 749 HOH HOH . 
L 5 HOH B 41 750 750 HOH HOH . 
L 5 HOH B 42 751 751 HOH HOH . 
L 5 HOH B 43 752 752 HOH HOH . 
L 5 HOH B 44 754 754 HOH HOH . 
L 5 HOH B 45 755 755 HOH HOH . 
L 5 HOH B 46 756 756 HOH HOH . 
L 5 HOH B 47 757 757 HOH HOH . 
L 5 HOH B 48 782 782 HOH HOH . 
L 5 HOH B 49 783 783 HOH HOH . 
L 5 HOH B 50 784 784 HOH HOH . 
L 5 HOH B 51 785 785 HOH HOH . 
L 5 HOH B 52 786 786 HOH HOH . 
L 5 HOH B 53 787 787 HOH HOH . 
L 5 HOH B 54 789 789 HOH HOH . 
L 5 HOH B 55 792 792 HOH HOH . 
L 5 HOH B 56 793 793 HOH HOH . 
L 5 HOH B 57 794 794 HOH HOH . 
L 5 HOH B 58 795 795 HOH HOH . 
L 5 HOH B 59 797 797 HOH HOH . 
L 5 HOH B 60 800 800 HOH HOH . 
L 5 HOH B 61 803 803 HOH HOH . 
L 5 HOH B 62 805 805 HOH HOH . 
L 5 HOH B 63 806 806 HOH HOH . 
L 5 HOH B 64 807 807 HOH HOH . 
L 5 HOH B 65 808 808 HOH HOH . 
L 5 HOH B 66 811 811 HOH HOH . 
L 5 HOH B 67 812 812 HOH HOH . 
L 5 HOH B 68 817 817 HOH HOH . 
L 5 HOH B 69 819 819 HOH HOH . 
L 5 HOH B 70 822 822 HOH HOH . 
L 5 HOH B 71 824 824 HOH HOH . 
L 5 HOH B 72 826 826 HOH HOH . 
L 5 HOH B 73 827 827 HOH HOH . 
L 5 HOH B 74 829 829 HOH HOH . 
L 5 HOH B 75 831 831 HOH HOH . 
L 5 HOH B 76 835 835 HOH HOH . 
L 5 HOH B 77 836 836 HOH HOH . 
L 5 HOH B 78 837 837 HOH HOH . 
L 5 HOH B 79 838 838 HOH HOH . 
L 5 HOH B 80 841 841 HOH HOH . 
L 5 HOH B 81 844 844 HOH HOH . 
L 5 HOH B 82 846 846 HOH HOH . 
L 5 HOH B 83 847 847 HOH HOH . 
L 5 HOH B 84 848 848 HOH HOH . 
L 5 HOH B 85 849 849 HOH HOH . 
L 5 HOH B 86 850 850 HOH HOH . 
L 5 HOH B 87 851 851 HOH HOH . 
L 5 HOH B 88 852 852 HOH HOH . 
L 5 HOH B 89 854 854 HOH HOH . 
L 5 HOH B 90 857 857 HOH HOH . 
L 5 HOH B 91 859 859 HOH HOH . 
L 5 HOH B 92 860 860 HOH HOH . 
L 5 HOH B 93 862 862 HOH HOH . 
L 5 HOH B 94 863 863 HOH HOH . 
L 5 HOH B 95 864 864 HOH HOH . 
L 5 HOH B 96 884 884 HOH HOH . 
L 5 HOH B 97 885 885 HOH HOH . 
L 5 HOH B 98 886 886 HOH HOH . 
L 5 HOH B 99 887 887 HOH HOH . 
L 5 HOH B 100 888 888 HOH HOH . 
L 5 HOH B 101 890 890 HOH HOH . 
L 5 HOH B 102 891 891 HOH HOH . 
L 5 HOH B 103 893 893 HOH HOH . 
L 5 HOH B 104 894 894 HOH HOH . 
L 5 HOH B 105 895 895 HOH HOH . 
L 5 HOH B 106 896 896 HOH HOH . 
L 5 HOH B 107 897 897 HOH HOH . 
L 5 HOH B 108 899 899 HOH HOH . 
L 5 HOH B 109 900 900 HOH HOH . 
L 5 HOH B 110 901 901 HOH HOH . 
L 5 HOH B 111 902 902 HOH HOH . 
L 5 HOH B 112 903 903 HOH HOH . 
L 5 HOH B 113 904 904 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               27.257 
_atom_site.Cartn_y               14.432 
_atom_site.Cartn_z               54.312 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        34.15 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           500 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#