data_1KHB # _model_server_result.job_id F_iwH5PqymjQ1KT7dKnMCg _model_server_result.datetime_utc '2024-10-18 22:27:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1khb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 1KHB # _exptl.entry_id 1KHB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 88.4 _cell.angle_beta 70.3 _cell.angle_gamma 72.63 _cell.entry_id 1KHB _cell.length_a 45.4 _cell.length_b 60.58 _cell.length_c 62 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KHB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NZ LYS 247 A LYS 244 1_555 C MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc2 A NE2 HIS 267 A HIS 264 1_555 C MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc3 A OG1 THR 294 A THR 291 1_555 B MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc4 A OD1 ASP 314 A ASP 311 1_555 C MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc5 B MN MN . A MN 701 1_555 E O3G GCP . A GCP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc6 B MN MN . A MN 701 1_555 E O2B GCP . A GCP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc7 B MN MN . A MN 701 1_555 H O HOH . A HOH 788 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc8 B MN MN . A MN 701 1_555 H O HOH . A HOH 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc9 B MN MN . A MN 701 1_555 H O HOH . A HOH 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc10 C MN MN . A MN 702 1_555 E O1G GCP . A GCP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 1KHB _atom_sites.fract_transf_matrix[1][1] 0.022026 _atom_sites.fract_transf_matrix[1][2] -0.00689 _atom_sites.fract_transf_matrix[1][3] -0.008472 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017296 _atom_sites.fract_transf_matrix[2][3] 0.001404 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017188 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 701 701 MN MN . C 2 MN A 1 702 702 MN MN . D 3 ACT A 1 703 1 ACT ACT . E 4 GCP A 1 704 1 GCP GZO . F 5 EDO A 1 705 1 EDO EDO . G 5 EDO A 1 706 2 EDO EDO . H 6 HOH A 1 707 1 HOH HOH . H 6 HOH A 2 708 2 HOH HOH . H 6 HOH A 3 709 3 HOH HOH . H 6 HOH A 4 710 4 HOH HOH . H 6 HOH A 5 711 5 HOH HOH . H 6 HOH A 6 712 6 HOH HOH . H 6 HOH A 7 713 7 HOH HOH . H 6 HOH A 8 714 8 HOH HOH . H 6 HOH A 9 715 9 HOH HOH . H 6 HOH A 10 716 10 HOH HOH . H 6 HOH A 11 717 11 HOH HOH . H 6 HOH A 12 718 12 HOH HOH . H 6 HOH A 13 719 13 HOH HOH . H 6 HOH A 14 720 14 HOH HOH . H 6 HOH A 15 721 15 HOH HOH . H 6 HOH A 16 722 16 HOH HOH . H 6 HOH A 17 723 17 HOH HOH . H 6 HOH A 18 724 18 HOH HOH . H 6 HOH A 19 725 19 HOH HOH . H 6 HOH A 20 726 20 HOH HOH . H 6 HOH A 21 727 21 HOH HOH . H 6 HOH A 22 728 22 HOH HOH . H 6 HOH A 23 729 23 HOH HOH . H 6 HOH A 24 730 24 HOH HOH . H 6 HOH A 25 731 25 HOH HOH . H 6 HOH A 26 732 26 HOH HOH . H 6 HOH A 27 733 27 HOH HOH . H 6 HOH A 28 734 28 HOH HOH . H 6 HOH A 29 735 29 HOH HOH . H 6 HOH A 30 736 30 HOH HOH . H 6 HOH A 31 737 31 HOH HOH . H 6 HOH A 32 738 32 HOH HOH . H 6 HOH A 33 739 33 HOH HOH . H 6 HOH A 34 740 34 HOH HOH . H 6 HOH A 35 741 35 HOH HOH . H 6 HOH A 36 742 36 HOH HOH . H 6 HOH A 37 743 37 HOH HOH . H 6 HOH A 38 744 38 HOH HOH . H 6 HOH A 39 745 39 HOH HOH . H 6 HOH A 40 746 40 HOH HOH . H 6 HOH A 41 747 41 HOH HOH . H 6 HOH A 42 748 42 HOH HOH . H 6 HOH A 43 749 43 HOH HOH . H 6 HOH A 44 750 44 HOH HOH . H 6 HOH A 45 751 45 HOH HOH . H 6 HOH A 46 752 46 HOH HOH . H 6 HOH A 47 753 47 HOH HOH . H 6 HOH A 48 754 48 HOH HOH . H 6 HOH A 49 755 49 HOH HOH . H 6 HOH A 50 756 50 HOH HOH . H 6 HOH A 51 757 51 HOH HOH . H 6 HOH A 52 758 52 HOH HOH . H 6 HOH A 53 759 53 HOH HOH . H 6 HOH A 54 760 54 HOH HOH . H 6 HOH A 55 761 55 HOH HOH . H 6 HOH A 56 762 56 HOH HOH . H 6 HOH A 57 763 57 HOH HOH . H 6 HOH A 58 764 58 HOH HOH . H 6 HOH A 59 765 59 HOH HOH . H 6 HOH A 60 766 60 HOH HOH . H 6 HOH A 61 767 61 HOH HOH . H 6 HOH A 62 768 62 HOH HOH . H 6 HOH A 63 769 63 HOH HOH . H 6 HOH A 64 770 64 HOH HOH . H 6 HOH A 65 771 65 HOH HOH . H 6 HOH A 66 772 66 HOH HOH . H 6 HOH A 67 773 67 HOH HOH . H 6 HOH A 68 774 68 HOH HOH . H 6 HOH A 69 775 69 HOH HOH . H 6 HOH A 70 776 70 HOH HOH . H 6 HOH A 71 777 71 HOH HOH . H 6 HOH A 72 778 72 HOH HOH . H 6 HOH A 73 779 73 HOH HOH . H 6 HOH A 74 780 74 HOH HOH . H 6 HOH A 75 781 75 HOH HOH . H 6 HOH A 76 782 76 HOH HOH . H 6 HOH A 77 783 77 HOH HOH . H 6 HOH A 78 784 78 HOH HOH . H 6 HOH A 79 785 79 HOH HOH . H 6 HOH A 80 786 80 HOH HOH . H 6 HOH A 81 787 81 HOH HOH . H 6 HOH A 82 788 82 HOH HOH . H 6 HOH A 83 789 83 HOH HOH . H 6 HOH A 84 790 84 HOH HOH . H 6 HOH A 85 791 85 HOH HOH . H 6 HOH A 86 792 86 HOH HOH . H 6 HOH A 87 793 87 HOH HOH . H 6 HOH A 88 794 88 HOH HOH . H 6 HOH A 89 795 89 HOH HOH . H 6 HOH A 90 796 90 HOH HOH . H 6 HOH A 91 797 91 HOH HOH . H 6 HOH A 92 798 92 HOH HOH . H 6 HOH A 93 799 93 HOH HOH . H 6 HOH A 94 800 94 HOH HOH . H 6 HOH A 95 801 95 HOH HOH . H 6 HOH A 96 802 96 HOH HOH . H 6 HOH A 97 803 97 HOH HOH . H 6 HOH A 98 804 98 HOH HOH . H 6 HOH A 99 805 99 HOH HOH . H 6 HOH A 100 806 100 HOH HOH . H 6 HOH A 101 807 101 HOH HOH . H 6 HOH A 102 808 102 HOH HOH . H 6 HOH A 103 809 103 HOH HOH . H 6 HOH A 104 810 104 HOH HOH . H 6 HOH A 105 811 105 HOH HOH . H 6 HOH A 106 812 106 HOH HOH . H 6 HOH A 107 813 107 HOH HOH . H 6 HOH A 108 814 108 HOH HOH . H 6 HOH A 109 815 109 HOH HOH . H 6 HOH A 110 816 110 HOH HOH . H 6 HOH A 111 817 111 HOH HOH . H 6 HOH A 112 818 112 HOH HOH . H 6 HOH A 113 819 113 HOH HOH . H 6 HOH A 114 820 114 HOH HOH . H 6 HOH A 115 821 115 HOH HOH . H 6 HOH A 116 822 116 HOH HOH . H 6 HOH A 117 823 117 HOH HOH . H 6 HOH A 118 824 118 HOH HOH . H 6 HOH A 119 825 119 HOH HOH . H 6 HOH A 120 826 120 HOH HOH . H 6 HOH A 121 827 121 HOH HOH . H 6 HOH A 122 828 122 HOH HOH . H 6 HOH A 123 829 123 HOH HOH . H 6 HOH A 124 830 124 HOH HOH . H 6 HOH A 125 831 125 HOH HOH . H 6 HOH A 126 832 126 HOH HOH . H 6 HOH A 127 833 127 HOH HOH . H 6 HOH A 128 834 128 HOH HOH . H 6 HOH A 129 835 129 HOH HOH . H 6 HOH A 130 836 130 HOH HOH . H 6 HOH A 131 837 131 HOH HOH . H 6 HOH A 132 838 132 HOH HOH . H 6 HOH A 133 839 133 HOH HOH . H 6 HOH A 134 840 134 HOH HOH . H 6 HOH A 135 841 135 HOH HOH . H 6 HOH A 136 842 136 HOH HOH . H 6 HOH A 137 843 137 HOH HOH . H 6 HOH A 138 844 138 HOH HOH . H 6 HOH A 139 845 139 HOH HOH . H 6 HOH A 140 846 140 HOH HOH . H 6 HOH A 141 847 141 HOH HOH . H 6 HOH A 142 848 142 HOH HOH . H 6 HOH A 143 849 143 HOH HOH . H 6 HOH A 144 850 144 HOH HOH . H 6 HOH A 145 851 145 HOH HOH . H 6 HOH A 146 852 146 HOH HOH . H 6 HOH A 147 853 147 HOH HOH . H 6 HOH A 148 854 148 HOH HOH . H 6 HOH A 149 855 149 HOH HOH . H 6 HOH A 150 856 150 HOH HOH . H 6 HOH A 151 857 151 HOH HOH . H 6 HOH A 152 858 152 HOH HOH . H 6 HOH A 153 859 153 HOH HOH . H 6 HOH A 154 860 154 HOH HOH . H 6 HOH A 155 861 155 HOH HOH . H 6 HOH A 156 862 156 HOH HOH . H 6 HOH A 157 863 157 HOH HOH . H 6 HOH A 158 864 158 HOH HOH . H 6 HOH A 159 865 159 HOH HOH . H 6 HOH A 160 866 160 HOH HOH . H 6 HOH A 161 867 161 HOH HOH . H 6 HOH A 162 868 162 HOH HOH . H 6 HOH A 163 869 163 HOH HOH . H 6 HOH A 164 870 164 HOH HOH . H 6 HOH A 165 871 165 HOH HOH . H 6 HOH A 166 872 166 HOH HOH . H 6 HOH A 167 873 167 HOH HOH . H 6 HOH A 168 874 168 HOH HOH . H 6 HOH A 169 875 169 HOH HOH . H 6 HOH A 170 876 170 HOH HOH . H 6 HOH A 171 877 171 HOH HOH . H 6 HOH A 172 878 172 HOH HOH . H 6 HOH A 173 879 173 HOH HOH . H 6 HOH A 174 880 174 HOH HOH . H 6 HOH A 175 881 175 HOH HOH . H 6 HOH A 176 882 176 HOH HOH . H 6 HOH A 177 883 177 HOH HOH . H 6 HOH A 178 884 178 HOH HOH . H 6 HOH A 179 885 179 HOH HOH . H 6 HOH A 180 886 180 HOH HOH . H 6 HOH A 181 887 181 HOH HOH . H 6 HOH A 182 888 182 HOH HOH . H 6 HOH A 183 889 183 HOH HOH . H 6 HOH A 184 890 184 HOH HOH . H 6 HOH A 185 891 185 HOH HOH . H 6 HOH A 186 892 186 HOH HOH . H 6 HOH A 187 893 187 HOH HOH . H 6 HOH A 188 894 188 HOH HOH . H 6 HOH A 189 895 189 HOH HOH . H 6 HOH A 190 896 190 HOH HOH . H 6 HOH A 191 897 191 HOH HOH . H 6 HOH A 192 898 192 HOH HOH . H 6 HOH A 193 899 193 HOH HOH . H 6 HOH A 194 900 194 HOH HOH . H 6 HOH A 195 901 195 HOH HOH . H 6 HOH A 196 902 196 HOH HOH . H 6 HOH A 197 903 197 HOH HOH . H 6 HOH A 198 904 198 HOH HOH . H 6 HOH A 199 905 199 HOH HOH . H 6 HOH A 200 906 200 HOH HOH . H 6 HOH A 201 907 201 HOH HOH . H 6 HOH A 202 908 202 HOH HOH . H 6 HOH A 203 909 203 HOH HOH . H 6 HOH A 204 910 204 HOH HOH . H 6 HOH A 205 911 205 HOH HOH . H 6 HOH A 206 912 206 HOH HOH . H 6 HOH A 207 913 207 HOH HOH . H 6 HOH A 208 914 208 HOH HOH . H 6 HOH A 209 915 209 HOH HOH . H 6 HOH A 210 916 210 HOH HOH . H 6 HOH A 211 917 211 HOH HOH . H 6 HOH A 212 918 212 HOH HOH . H 6 HOH A 213 919 213 HOH HOH . H 6 HOH A 214 920 214 HOH HOH . H 6 HOH A 215 921 215 HOH HOH . H 6 HOH A 216 922 216 HOH HOH . H 6 HOH A 217 923 217 HOH HOH . H 6 HOH A 218 924 218 HOH HOH . H 6 HOH A 219 925 219 HOH HOH . H 6 HOH A 220 926 220 HOH HOH . H 6 HOH A 221 927 221 HOH HOH . H 6 HOH A 222 928 222 HOH HOH . H 6 HOH A 223 929 223 HOH HOH . H 6 HOH A 224 930 224 HOH HOH . H 6 HOH A 225 931 225 HOH HOH . H 6 HOH A 226 932 226 HOH HOH . H 6 HOH A 227 933 227 HOH HOH . H 6 HOH A 228 934 228 HOH HOH . H 6 HOH A 229 935 229 HOH HOH . H 6 HOH A 230 936 230 HOH HOH . H 6 HOH A 231 937 231 HOH HOH . H 6 HOH A 232 938 232 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . D 3 44.675 25.201 36.114 1 22.43 ? C ACT 703 A 1 HETATM 2 O O ACT . . . D 3 44.947 25.109 34.891 1 21.85 ? O ACT 703 A 1 HETATM 3 O OXT ACT . . . D 3 45.659 25.172 36.901 1 23.56 ? OXT ACT 703 A 1 HETATM 4 C CH3 ACT . . . D 3 43.268 25.304 36.62 1 20.04 ? CH3 ACT 703 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #