data_1KHF # _model_server_result.job_id yMyc1hiiuzboCi2QptxUVw _model_server_result.datetime_utc '2024-11-29 03:36:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1khf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 1KHF # _exptl.entry_id 1KHF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 88.69 _cell.angle_beta 70 _cell.angle_gamma 72.54 _cell.entry_id 1KHF _cell.length_a 45.251 _cell.length_b 60.679 _cell.length_c 62.032 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NZ LYS 247 A LYS 244 1_555 B MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc2 A NE2 HIS 267 A HIS 264 1_555 B MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc3 A OD1 ASP 314 A ASP 311 1_555 B MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc4 B MN MN . A MN 701 1_555 G O HOH . A HOH 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc5 B MN MN . A MN 701 1_555 G O HOH . A HOH 797 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc6 B MN MN . A MN 701 1_555 G O HOH . A HOH 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc7 C NA NA . A NA 702 1_555 D O2 PEP . A PEP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc8 C NA NA . A NA 702 1_555 D O1P PEP . A PEP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc9 C NA NA . A NA 702 1_555 G O HOH . A HOH 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc10 C NA NA . A NA 702 1_555 G O HOH . A HOH 861 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 1KHF _atom_sites.fract_transf_matrix[1][1] 0.022099 _atom_sites.fract_transf_matrix[1][2] -0.006952 _atom_sites.fract_transf_matrix[1][3] -0.008694 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017276 _atom_sites.fract_transf_matrix[2][3] 0.001541 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017223 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 701 701 MN MN . C 3 NA A 1 702 2 NA NA . D 4 PEP A 1 703 1 PEP PZP . E 5 EDO A 1 704 1 EDO EDO . F 5 EDO A 1 705 2 EDO EDO . G 6 HOH A 1 706 1 HOH HOH . G 6 HOH A 2 707 2 HOH HOH . G 6 HOH A 3 708 3 HOH HOH . G 6 HOH A 4 709 4 HOH HOH . G 6 HOH A 5 710 5 HOH HOH . G 6 HOH A 6 711 6 HOH HOH . G 6 HOH A 7 712 7 HOH HOH . G 6 HOH A 8 713 8 HOH HOH . G 6 HOH A 9 714 9 HOH HOH . G 6 HOH A 10 715 10 HOH HOH . G 6 HOH A 11 716 11 HOH HOH . G 6 HOH A 12 717 12 HOH HOH . G 6 HOH A 13 718 13 HOH HOH . G 6 HOH A 14 719 14 HOH HOH . G 6 HOH A 15 720 15 HOH HOH . G 6 HOH A 16 721 16 HOH HOH . G 6 HOH A 17 722 17 HOH HOH . G 6 HOH A 18 723 18 HOH HOH . G 6 HOH A 19 724 19 HOH HOH . G 6 HOH A 20 725 20 HOH HOH . G 6 HOH A 21 726 21 HOH HOH . G 6 HOH A 22 727 22 HOH HOH . G 6 HOH A 23 728 23 HOH HOH . G 6 HOH A 24 729 24 HOH HOH . G 6 HOH A 25 730 25 HOH HOH . G 6 HOH A 26 731 26 HOH HOH . G 6 HOH A 27 732 27 HOH HOH . G 6 HOH A 28 733 28 HOH HOH . G 6 HOH A 29 734 29 HOH HOH . G 6 HOH A 30 735 30 HOH HOH . G 6 HOH A 31 736 31 HOH HOH . G 6 HOH A 32 737 32 HOH HOH . G 6 HOH A 33 738 33 HOH HOH . G 6 HOH A 34 739 34 HOH HOH . G 6 HOH A 35 740 35 HOH HOH . G 6 HOH A 36 741 36 HOH HOH . G 6 HOH A 37 742 37 HOH HOH . G 6 HOH A 38 743 38 HOH HOH . G 6 HOH A 39 744 39 HOH HOH . G 6 HOH A 40 745 40 HOH HOH . G 6 HOH A 41 746 41 HOH HOH . G 6 HOH A 42 747 42 HOH HOH . G 6 HOH A 43 748 43 HOH HOH . G 6 HOH A 44 749 44 HOH HOH . G 6 HOH A 45 750 45 HOH HOH . G 6 HOH A 46 751 46 HOH HOH . G 6 HOH A 47 752 47 HOH HOH . G 6 HOH A 48 753 48 HOH HOH . G 6 HOH A 49 754 49 HOH HOH . G 6 HOH A 50 755 50 HOH HOH . G 6 HOH A 51 756 51 HOH HOH . G 6 HOH A 52 757 52 HOH HOH . G 6 HOH A 53 758 53 HOH HOH . G 6 HOH A 54 759 54 HOH HOH . G 6 HOH A 55 760 55 HOH HOH . G 6 HOH A 56 761 56 HOH HOH . G 6 HOH A 57 762 57 HOH HOH . G 6 HOH A 58 763 58 HOH HOH . G 6 HOH A 59 764 59 HOH HOH . G 6 HOH A 60 765 60 HOH HOH . G 6 HOH A 61 766 61 HOH HOH . G 6 HOH A 62 767 62 HOH HOH . G 6 HOH A 63 768 63 HOH HOH . G 6 HOH A 64 769 64 HOH HOH . G 6 HOH A 65 770 65 HOH HOH . G 6 HOH A 66 771 66 HOH HOH . G 6 HOH A 67 772 67 HOH HOH . G 6 HOH A 68 773 68 HOH HOH . G 6 HOH A 69 774 69 HOH HOH . G 6 HOH A 70 775 70 HOH HOH . G 6 HOH A 71 776 71 HOH HOH . G 6 HOH A 72 777 72 HOH HOH . G 6 HOH A 73 778 73 HOH HOH . G 6 HOH A 74 779 74 HOH HOH . G 6 HOH A 75 780 75 HOH HOH . G 6 HOH A 76 781 76 HOH HOH . G 6 HOH A 77 782 77 HOH HOH . G 6 HOH A 78 783 78 HOH HOH . G 6 HOH A 79 784 79 HOH HOH . G 6 HOH A 80 785 80 HOH HOH . G 6 HOH A 81 786 81 HOH HOH . G 6 HOH A 82 787 82 HOH HOH . G 6 HOH A 83 788 83 HOH HOH . G 6 HOH A 84 789 84 HOH HOH . G 6 HOH A 85 790 85 HOH HOH . G 6 HOH A 86 791 86 HOH HOH . G 6 HOH A 87 792 87 HOH HOH . G 6 HOH A 88 793 88 HOH HOH . G 6 HOH A 89 794 89 HOH HOH . G 6 HOH A 90 795 90 HOH HOH . G 6 HOH A 91 796 91 HOH HOH . G 6 HOH A 92 797 92 HOH HOH . G 6 HOH A 93 798 93 HOH HOH . G 6 HOH A 94 799 94 HOH HOH . G 6 HOH A 95 800 95 HOH HOH . G 6 HOH A 96 801 96 HOH HOH . G 6 HOH A 97 802 97 HOH HOH . G 6 HOH A 98 803 98 HOH HOH . G 6 HOH A 99 804 99 HOH HOH . G 6 HOH A 100 805 100 HOH HOH . G 6 HOH A 101 806 101 HOH HOH . G 6 HOH A 102 807 102 HOH HOH . G 6 HOH A 103 808 103 HOH HOH . G 6 HOH A 104 809 104 HOH HOH . G 6 HOH A 105 810 105 HOH HOH . G 6 HOH A 106 811 106 HOH HOH . G 6 HOH A 107 812 107 HOH HOH . G 6 HOH A 108 813 108 HOH HOH . G 6 HOH A 109 814 109 HOH HOH . G 6 HOH A 110 815 110 HOH HOH . G 6 HOH A 111 816 111 HOH HOH . G 6 HOH A 112 817 112 HOH HOH . G 6 HOH A 113 818 113 HOH HOH . G 6 HOH A 114 819 114 HOH HOH . G 6 HOH A 115 820 115 HOH HOH . G 6 HOH A 116 821 116 HOH HOH . G 6 HOH A 117 822 117 HOH HOH . G 6 HOH A 118 823 118 HOH HOH . G 6 HOH A 119 824 119 HOH HOH . G 6 HOH A 120 825 120 HOH HOH . G 6 HOH A 121 826 121 HOH HOH . G 6 HOH A 122 827 122 HOH HOH . G 6 HOH A 123 828 123 HOH HOH . G 6 HOH A 124 829 124 HOH HOH . G 6 HOH A 125 830 125 HOH HOH . G 6 HOH A 126 831 126 HOH HOH . G 6 HOH A 127 832 127 HOH HOH . G 6 HOH A 128 833 128 HOH HOH . G 6 HOH A 129 834 129 HOH HOH . G 6 HOH A 130 835 130 HOH HOH . G 6 HOH A 131 836 131 HOH HOH . G 6 HOH A 132 837 132 HOH HOH . G 6 HOH A 133 838 133 HOH HOH . G 6 HOH A 134 839 134 HOH HOH . G 6 HOH A 135 840 135 HOH HOH . G 6 HOH A 136 841 136 HOH HOH . G 6 HOH A 137 842 137 HOH HOH . G 6 HOH A 138 843 138 HOH HOH . G 6 HOH A 139 844 139 HOH HOH . G 6 HOH A 140 845 140 HOH HOH . G 6 HOH A 141 846 141 HOH HOH . G 6 HOH A 142 847 142 HOH HOH . G 6 HOH A 143 848 143 HOH HOH . G 6 HOH A 144 849 144 HOH HOH . G 6 HOH A 145 850 145 HOH HOH . G 6 HOH A 146 851 146 HOH HOH . G 6 HOH A 147 852 147 HOH HOH . G 6 HOH A 148 853 148 HOH HOH . G 6 HOH A 149 854 149 HOH HOH . G 6 HOH A 150 855 150 HOH HOH . G 6 HOH A 151 856 151 HOH HOH . G 6 HOH A 152 857 152 HOH HOH . G 6 HOH A 153 858 153 HOH HOH . G 6 HOH A 154 859 154 HOH HOH . G 6 HOH A 155 860 155 HOH HOH . G 6 HOH A 156 861 156 HOH HOH . G 6 HOH A 157 862 157 HOH HOH . G 6 HOH A 158 863 158 HOH HOH . G 6 HOH A 159 864 159 HOH HOH . G 6 HOH A 160 865 160 HOH HOH . G 6 HOH A 161 866 161 HOH HOH . G 6 HOH A 162 867 162 HOH HOH . G 6 HOH A 163 868 163 HOH HOH . G 6 HOH A 164 869 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 5 33.097 32.48 10.444 1 25.18 ? C1 EDO 704 A 1 HETATM 2 O O1 EDO . . . E 5 32.075 32.995 11.261 1 18.48 ? O1 EDO 704 A 1 HETATM 3 C C2 EDO . . . E 5 33.199 31.009 10.762 1 23.56 ? C2 EDO 704 A 1 HETATM 4 O O2 EDO . . . E 5 31.982 30.449 10.442 1 15.7 ? O2 EDO 704 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #