data_1KHG
#
_model_server_result.job_id            VSi4BkLe7WFhALi66sW3TA 
_model_server_result.datetime_utc      '2024-11-28 18:50:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1khg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":703}' 
#
_entry.id    1KHG 
#
_exptl.entry_id    1KHG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         88.69 
_cell.angle_beta          70.13 
_cell.angle_gamma         72.37 
_cell.entry_id            1KHG 
_cell.length_a            45.388 
_cell.length_b            60.872 
_cell.length_c            61.974 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KHG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NZ LYS 247 A LYS 244 1_555 B MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc2 A NE2 HIS 267 A HIS 264 1_555 B MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc3 A OD1 ASP 314 A ASP 311 1_555 B MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     1KHG 
_atom_sites.fract_transf_matrix[1][1]    0.022032 
_atom_sites.fract_transf_matrix[1][2]    -0.007003 
_atom_sites.fract_transf_matrix[1][3]    -0.008625 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017238 
_atom_sites.fract_transf_matrix[2][3]    0.001549 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017227 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 701 701 MN MN . 
C 3 EDO A 1 702 1 EDO EDO . 
D 3 EDO A 1 703 2 EDO EDO . 
E 4 HOH A 1 704 1 HOH HOH . 
E 4 HOH A 2 705 2 HOH HOH . 
E 4 HOH A 3 706 3 HOH HOH . 
E 4 HOH A 4 707 4 HOH HOH . 
E 4 HOH A 5 708 5 HOH HOH . 
E 4 HOH A 6 709 6 HOH HOH . 
E 4 HOH A 7 710 7 HOH HOH . 
E 4 HOH A 8 711 8 HOH HOH . 
E 4 HOH A 9 712 9 HOH HOH . 
E 4 HOH A 10 713 10 HOH HOH . 
E 4 HOH A 11 714 11 HOH HOH . 
E 4 HOH A 12 715 12 HOH HOH . 
E 4 HOH A 13 716 13 HOH HOH . 
E 4 HOH A 14 717 14 HOH HOH . 
E 4 HOH A 15 718 15 HOH HOH . 
E 4 HOH A 16 719 16 HOH HOH . 
E 4 HOH A 17 720 17 HOH HOH . 
E 4 HOH A 18 721 18 HOH HOH . 
E 4 HOH A 19 722 19 HOH HOH . 
E 4 HOH A 20 723 20 HOH HOH . 
E 4 HOH A 21 724 21 HOH HOH . 
E 4 HOH A 22 725 22 HOH HOH . 
E 4 HOH A 23 726 23 HOH HOH . 
E 4 HOH A 24 727 24 HOH HOH . 
E 4 HOH A 25 728 25 HOH HOH . 
E 4 HOH A 26 729 26 HOH HOH . 
E 4 HOH A 27 730 27 HOH HOH . 
E 4 HOH A 28 731 28 HOH HOH . 
E 4 HOH A 29 732 29 HOH HOH . 
E 4 HOH A 30 733 30 HOH HOH . 
E 4 HOH A 31 734 31 HOH HOH . 
E 4 HOH A 32 735 32 HOH HOH . 
E 4 HOH A 33 736 33 HOH HOH . 
E 4 HOH A 34 737 34 HOH HOH . 
E 4 HOH A 35 738 35 HOH HOH . 
E 4 HOH A 36 739 36 HOH HOH . 
E 4 HOH A 37 740 37 HOH HOH . 
E 4 HOH A 38 741 38 HOH HOH . 
E 4 HOH A 39 742 39 HOH HOH . 
E 4 HOH A 40 743 40 HOH HOH . 
E 4 HOH A 41 744 41 HOH HOH . 
E 4 HOH A 42 745 42 HOH HOH . 
E 4 HOH A 43 746 43 HOH HOH . 
E 4 HOH A 44 747 44 HOH HOH . 
E 4 HOH A 45 748 45 HOH HOH . 
E 4 HOH A 46 749 46 HOH HOH . 
E 4 HOH A 47 750 47 HOH HOH . 
E 4 HOH A 48 751 48 HOH HOH . 
E 4 HOH A 49 752 49 HOH HOH . 
E 4 HOH A 50 753 50 HOH HOH . 
E 4 HOH A 51 754 51 HOH HOH . 
E 4 HOH A 52 755 52 HOH HOH . 
E 4 HOH A 53 756 53 HOH HOH . 
E 4 HOH A 54 757 54 HOH HOH . 
E 4 HOH A 55 758 55 HOH HOH . 
E 4 HOH A 56 759 56 HOH HOH . 
E 4 HOH A 57 760 57 HOH HOH . 
E 4 HOH A 58 761 58 HOH HOH . 
E 4 HOH A 59 762 59 HOH HOH . 
E 4 HOH A 60 763 60 HOH HOH . 
E 4 HOH A 61 764 61 HOH HOH . 
E 4 HOH A 62 765 62 HOH HOH . 
E 4 HOH A 63 766 63 HOH HOH . 
E 4 HOH A 64 767 64 HOH HOH . 
E 4 HOH A 65 768 65 HOH HOH . 
E 4 HOH A 66 769 66 HOH HOH . 
E 4 HOH A 67 770 67 HOH HOH . 
E 4 HOH A 68 771 68 HOH HOH . 
E 4 HOH A 69 772 69 HOH HOH . 
E 4 HOH A 70 773 70 HOH HOH . 
E 4 HOH A 71 774 71 HOH HOH . 
E 4 HOH A 72 775 72 HOH HOH . 
E 4 HOH A 73 776 73 HOH HOH . 
E 4 HOH A 74 777 74 HOH HOH . 
E 4 HOH A 75 778 75 HOH HOH . 
E 4 HOH A 76 779 76 HOH HOH . 
E 4 HOH A 77 780 77 HOH HOH . 
E 4 HOH A 78 781 78 HOH HOH . 
E 4 HOH A 79 782 79 HOH HOH . 
E 4 HOH A 80 783 80 HOH HOH . 
E 4 HOH A 81 784 81 HOH HOH . 
E 4 HOH A 82 785 82 HOH HOH . 
E 4 HOH A 83 786 83 HOH HOH . 
E 4 HOH A 84 787 84 HOH HOH . 
E 4 HOH A 85 788 85 HOH HOH . 
E 4 HOH A 86 789 86 HOH HOH . 
E 4 HOH A 87 790 87 HOH HOH . 
E 4 HOH A 88 791 88 HOH HOH . 
E 4 HOH A 89 792 89 HOH HOH . 
E 4 HOH A 90 793 90 HOH HOH . 
E 4 HOH A 91 794 91 HOH HOH . 
E 4 HOH A 92 795 92 HOH HOH . 
E 4 HOH A 93 796 93 HOH HOH . 
E 4 HOH A 94 797 94 HOH HOH . 
E 4 HOH A 95 798 95 HOH HOH . 
E 4 HOH A 96 799 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 33.293 36.491 49.495 1 20.89 ? C1 EDO 703 A 1 
HETATM 2 O O1 EDO . . . D 3 32.002 37.034 49.656 1 17.06 ? O1 EDO 703 A 1 
HETATM 3 C C2 EDO . . . D 3 33.198 34.991 49.345 1 14.8 ? C2 EDO 703 A 1 
HETATM 4 O O2 EDO . . . D 3 32.294 34.477 50.296 1 19.1 ? O2 EDO 703 A 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           4 
#