data_1KHH
#
_model_server_result.job_id            OiqkBmP-EDFrMl6xB0Rpkw 
_model_server_result.datetime_utc      '2024-11-05 01:25:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1khh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":236}' 
#
_entry.id    1KHH 
#
_exptl.entry_id    1KHH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1KHH 
_cell.length_a            54.25 
_cell.length_b            54.25 
_cell.length_c            156.56 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KHH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 277 n n 
N HN1 SAH sing 278 n n 
N HN2 SAH sing 279 n n 
CA CB SAH sing 280 n n 
CA C SAH sing 281 n n 
CA HA SAH sing 282 n n 
CB CG SAH sing 283 n n 
CB HB1 SAH sing 284 n n 
CB HB2 SAH sing 285 n n 
CG SD SAH sing 286 n n 
CG HG1 SAH sing 287 n n 
CG HG2 SAH sing 288 n n 
SD C5' SAH sing 289 n n 
C O SAH doub 290 n n 
C OXT SAH sing 291 n n 
OXT HXT SAH sing 292 n n 
C5' C4' SAH sing 293 n n 
C5' "H5'1" SAH sing 294 n n 
C5' "H5'2" SAH sing 295 n n 
C4' O4' SAH sing 296 n n 
C4' C3' SAH sing 297 n n 
C4' H4' SAH sing 298 n n 
O4' C1' SAH sing 299 n n 
C3' O3' SAH sing 300 n n 
C3' C2' SAH sing 301 n n 
C3' H3' SAH sing 302 n n 
O3' HO3' SAH sing 303 n n 
C2' O2' SAH sing 304 n n 
C2' C1' SAH sing 305 n n 
C2' H2' SAH sing 306 n n 
O2' HO2' SAH sing 307 n n 
C1' N9 SAH sing 308 n n 
C1' H1' SAH sing 309 n n 
N9 C8 SAH sing 310 n y 
N9 C4 SAH sing 311 n y 
C8 N7 SAH doub 312 n y 
C8 H8 SAH sing 313 n n 
N7 C5 SAH sing 314 n y 
C5 C6 SAH sing 315 n y 
C5 C4 SAH doub 316 n y 
C6 N6 SAH sing 317 n n 
C6 N1 SAH doub 318 n y 
N6 HN61 SAH sing 319 n n 
N6 HN62 SAH sing 320 n n 
N1 C2 SAH sing 321 n y 
C2 N3 SAH doub 322 n y 
C2 H2 SAH sing 323 n n 
N3 C4 SAH sing 324 n y 
#
_atom_sites.entry_id                     1KHH 
_atom_sites.fract_transf_matrix[1][1]    0.018433 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018433 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006387 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 236 236 SAH SAH . 
D 2 SAH B 1 1236 1236 SAH SAH . 
E 3 HOH A 1 5001 5001 HOH H2O . 
E 3 HOH A 2 5004 5004 HOH H2O . 
E 3 HOH A 3 5007 5007 HOH H2O . 
E 3 HOH A 4 5009 5009 HOH H2O . 
E 3 HOH A 5 5010 5010 HOH H2O . 
E 3 HOH A 6 5012 5012 HOH H2O . 
E 3 HOH A 7 5015 5015 HOH H2O . 
E 3 HOH A 8 5016 5016 HOH H2O . 
E 3 HOH A 9 5018 5018 HOH H2O . 
E 3 HOH A 10 5020 5020 HOH H2O . 
E 3 HOH A 11 5021 5021 HOH H2O . 
E 3 HOH A 12 5022 5022 HOH H2O . 
E 3 HOH A 13 5025 5025 HOH H2O . 
E 3 HOH A 14 5027 5027 HOH H2O . 
E 3 HOH A 15 5029 5029 HOH H2O . 
E 3 HOH A 16 5030 5030 HOH H2O . 
E 3 HOH A 17 5031 5031 HOH H2O . 
E 3 HOH A 18 5032 5032 HOH H2O . 
E 3 HOH A 19 5033 5033 HOH H2O . 
E 3 HOH A 20 5034 5034 HOH H2O . 
E 3 HOH A 21 5039 5039 HOH H2O . 
E 3 HOH A 22 5040 5040 HOH H2O . 
E 3 HOH A 23 5041 5041 HOH H2O . 
E 3 HOH A 24 5043 5043 HOH H2O . 
E 3 HOH A 25 5045 5045 HOH H2O . 
E 3 HOH A 26 5046 5046 HOH H2O . 
E 3 HOH A 27 5047 5047 HOH H2O . 
E 3 HOH A 28 5049 5049 HOH H2O . 
E 3 HOH A 29 5052 5052 HOH H2O . 
E 3 HOH A 30 5053 5053 HOH H2O . 
E 3 HOH A 31 5054 5054 HOH H2O . 
E 3 HOH A 32 5057 5057 HOH H2O . 
E 3 HOH A 33 5059 5059 HOH H2O . 
E 3 HOH A 34 5061 5061 HOH H2O . 
E 3 HOH A 35 5062 5062 HOH H2O . 
E 3 HOH A 36 5063 5063 HOH H2O . 
E 3 HOH A 37 5066 5066 HOH H2O . 
E 3 HOH A 38 5067 5067 HOH H2O . 
E 3 HOH A 39 5070 5070 HOH H2O . 
E 3 HOH A 40 5071 5071 HOH H2O . 
E 3 HOH A 41 5072 5072 HOH H2O . 
E 3 HOH A 42 5073 5073 HOH H2O . 
E 3 HOH A 43 5074 5074 HOH H2O . 
E 3 HOH A 44 5075 5075 HOH H2O . 
E 3 HOH A 45 5079 5079 HOH H2O . 
E 3 HOH A 46 5080 5080 HOH H2O . 
E 3 HOH A 47 5084 5084 HOH H2O . 
E 3 HOH A 48 5087 5087 HOH H2O . 
E 3 HOH A 49 5088 5088 HOH H2O . 
E 3 HOH A 50 5089 5089 HOH H2O . 
E 3 HOH A 51 5091 5091 HOH H2O . 
E 3 HOH A 52 5092 5092 HOH H2O . 
E 3 HOH A 53 5094 5094 HOH H2O . 
E 3 HOH A 54 5097 5097 HOH H2O . 
E 3 HOH A 55 5098 5098 HOH H2O . 
E 3 HOH A 56 5100 5100 HOH H2O . 
E 3 HOH A 57 5101 5101 HOH H2O . 
E 3 HOH A 58 5102 5102 HOH H2O . 
E 3 HOH A 59 5103 5103 HOH H2O . 
E 3 HOH A 60 5105 5105 HOH H2O . 
E 3 HOH A 61 5108 5108 HOH H2O . 
E 3 HOH A 62 5110 5110 HOH H2O . 
E 3 HOH A 63 5111 5111 HOH H2O . 
E 3 HOH A 64 5112 5112 HOH H2O . 
E 3 HOH A 65 5113 5113 HOH H2O . 
E 3 HOH A 66 5115 5115 HOH H2O . 
E 3 HOH A 67 5117 5117 HOH H2O . 
E 3 HOH A 68 5120 5120 HOH H2O . 
E 3 HOH A 69 5122 5122 HOH H2O . 
E 3 HOH A 70 5123 5123 HOH H2O . 
E 3 HOH A 71 5126 5126 HOH H2O . 
E 3 HOH A 72 5127 5127 HOH H2O . 
E 3 HOH A 73 5128 5128 HOH H2O . 
E 3 HOH A 74 5129 5129 HOH H2O . 
E 3 HOH A 75 5130 5130 HOH H2O . 
E 3 HOH A 76 5132 5132 HOH H2O . 
E 3 HOH A 77 5133 5133 HOH H2O . 
E 3 HOH A 78 5136 5136 HOH H2O . 
E 3 HOH A 79 5138 5138 HOH H2O . 
E 3 HOH A 80 5139 5139 HOH H2O . 
E 3 HOH A 81 5140 5140 HOH H2O . 
E 3 HOH A 82 5141 5141 HOH H2O . 
E 3 HOH A 83 5143 5143 HOH H2O . 
E 3 HOH A 84 5144 5144 HOH H2O . 
E 3 HOH A 85 5145 5145 HOH H2O . 
E 3 HOH A 86 5148 5148 HOH H2O . 
E 3 HOH A 87 5149 5149 HOH H2O . 
E 3 HOH A 88 5150 5150 HOH H2O . 
E 3 HOH A 89 5151 5151 HOH H2O . 
E 3 HOH A 90 5152 5152 HOH H2O . 
E 3 HOH A 91 5153 5153 HOH H2O . 
E 3 HOH A 92 5154 5154 HOH H2O . 
E 3 HOH A 93 5155 5155 HOH H2O . 
E 3 HOH A 94 5156 5156 HOH H2O . 
E 3 HOH A 95 5158 5158 HOH H2O . 
E 3 HOH A 96 5159 5159 HOH H2O . 
E 3 HOH A 97 5160 5160 HOH H2O . 
E 3 HOH A 98 5161 5161 HOH H2O . 
F 3 HOH B 1 5002 5002 HOH H2O . 
F 3 HOH B 2 5003 5003 HOH H2O . 
F 3 HOH B 3 5005 5005 HOH H2O . 
F 3 HOH B 4 5006 5006 HOH H2O . 
F 3 HOH B 5 5008 5008 HOH H2O . 
F 3 HOH B 6 5011 5011 HOH H2O . 
F 3 HOH B 7 5013 5013 HOH H2O . 
F 3 HOH B 8 5014 5014 HOH H2O . 
F 3 HOH B 9 5017 5017 HOH H2O . 
F 3 HOH B 10 5019 5019 HOH H2O . 
F 3 HOH B 11 5023 5023 HOH H2O . 
F 3 HOH B 12 5024 5024 HOH H2O . 
F 3 HOH B 13 5026 5026 HOH H2O . 
F 3 HOH B 14 5028 5028 HOH H2O . 
F 3 HOH B 15 5035 5035 HOH H2O . 
F 3 HOH B 16 5036 5036 HOH H2O . 
F 3 HOH B 17 5037 5037 HOH H2O . 
F 3 HOH B 18 5038 5038 HOH H2O . 
F 3 HOH B 19 5042 5042 HOH H2O . 
F 3 HOH B 20 5044 5044 HOH H2O . 
F 3 HOH B 21 5048 5048 HOH H2O . 
F 3 HOH B 22 5050 5050 HOH H2O . 
F 3 HOH B 23 5051 5051 HOH H2O . 
F 3 HOH B 24 5055 5055 HOH H2O . 
F 3 HOH B 25 5056 5056 HOH H2O . 
F 3 HOH B 26 5058 5058 HOH H2O . 
F 3 HOH B 27 5060 5060 HOH H2O . 
F 3 HOH B 28 5064 5064 HOH H2O . 
F 3 HOH B 29 5065 5065 HOH H2O . 
F 3 HOH B 30 5068 5068 HOH H2O . 
F 3 HOH B 31 5069 5069 HOH H2O . 
F 3 HOH B 32 5076 5076 HOH H2O . 
F 3 HOH B 33 5077 5077 HOH H2O . 
F 3 HOH B 34 5078 5078 HOH H2O . 
F 3 HOH B 35 5081 5081 HOH H2O . 
F 3 HOH B 36 5082 5082 HOH H2O . 
F 3 HOH B 37 5083 5083 HOH H2O . 
F 3 HOH B 38 5085 5085 HOH H2O . 
F 3 HOH B 39 5086 5086 HOH H2O . 
F 3 HOH B 40 5090 5090 HOH H2O . 
F 3 HOH B 41 5093 5093 HOH H2O . 
F 3 HOH B 42 5095 5095 HOH H2O . 
F 3 HOH B 43 5096 5096 HOH H2O . 
F 3 HOH B 44 5099 5099 HOH H2O . 
F 3 HOH B 45 5104 5104 HOH H2O . 
F 3 HOH B 46 5106 5106 HOH H2O . 
F 3 HOH B 47 5107 5107 HOH H2O . 
F 3 HOH B 48 5109 5109 HOH H2O . 
F 3 HOH B 49 5114 5114 HOH H2O . 
F 3 HOH B 50 5116 5116 HOH H2O . 
F 3 HOH B 51 5118 5118 HOH H2O . 
F 3 HOH B 52 5119 5119 HOH H2O . 
F 3 HOH B 53 5121 5121 HOH H2O . 
F 3 HOH B 54 5124 5124 HOH H2O . 
F 3 HOH B 55 5125 5125 HOH H2O . 
F 3 HOH B 56 5131 5131 HOH H2O . 
F 3 HOH B 57 5134 5134 HOH H2O . 
F 3 HOH B 58 5135 5135 HOH H2O . 
F 3 HOH B 59 5137 5137 HOH H2O . 
F 3 HOH B 60 5142 5142 HOH H2O . 
F 3 HOH B 61 5146 5146 HOH H2O . 
F 3 HOH B 62 5147 5147 HOH H2O . 
F 3 HOH B 63 5157 5157 HOH H2O . 
F 3 HOH B 64 5162 5162 HOH H2O . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . C 2 -2.304 4.423 -19.359 1 14.6 ? N SAH 236 A 1 
HETATM 2 C CA SAH . . . C 2 -1.118 4.391 -20.242 1 14.63 ? CA SAH 236 A 1 
HETATM 3 C CB SAH . . . C 2 0.098 4.117 -19.387 1 14.39 ? CB SAH 236 A 1 
HETATM 4 C CG SAH . . . C 2 0.716 5.411 -19.033 1 10.69 ? CG SAH 236 A 1 
HETATM 5 S SD SAH . . . C 2 2.191 5.355 -18.018 1 12.99 ? SD SAH 236 A 1 
HETATM 6 C C SAH . . . C 2 -1.254 3.315 -21.305 1 16.43 ? C SAH 236 A 1 
HETATM 7 O O SAH . . . C 2 -2.274 2.614 -21.319 1 23.23 ? O SAH 236 A 1 
HETATM 8 O OXT SAH . . . C 2 -0.273 3.228 -22.113 1 17.98 ? OXT SAH 236 A 1 
HETATM 9 C C5' SAH . . . C 2 2.074 6.879 -17.177 1 5.34 ? C5' SAH 236 A 1 
HETATM 10 C C4' SAH . . . C 2 2.284 8.147 -17.976 1 4.21 ? C4' SAH 236 A 1 
HETATM 11 O O4' SAH . . . C 2 2.097 9.211 -17.013 1 9.66 ? O4' SAH 236 A 1 
HETATM 12 C C3' SAH . . . C 2 3.714 8.358 -18.476 1 6.56 ? C3' SAH 236 A 1 
HETATM 13 O O3' SAH . . . C 2 3.604 8.698 -19.884 1 7.72 ? O3' SAH 236 A 1 
HETATM 14 C C2' SAH . . . C 2 4.226 9.551 -17.69 1 6.87 ? C2' SAH 236 A 1 
HETATM 15 O O2' SAH . . . C 2 5.275 10.385 -18.122 1 13.09 ? O2' SAH 236 A 1 
HETATM 16 C C1' SAH . . . C 2 2.929 10.274 -17.303 1 4.81 ? C1' SAH 236 A 1 
HETATM 17 N N9 SAH . . . C 2 2.996 11.028 -16.061 1 4.82 ? N9 SAH 236 A 1 
HETATM 18 C C8 SAH . . . C 2 3.617 10.705 -14.873 1 6.48 ? C8 SAH 236 A 1 
HETATM 19 N N7 SAH . . . C 2 3.474 11.601 -13.916 1 10.09 ? N7 SAH 236 A 1 
HETATM 20 C C5 SAH . . . C 2 2.699 12.592 -14.51 1 8.2 ? C5 SAH 236 A 1 
HETATM 21 C C6 SAH . . . C 2 2.171 13.828 -14.036 1 4.2 ? C6 SAH 236 A 1 
HETATM 22 N N6 SAH . . . C 2 2.379 14.262 -12.784 1 2 ? N6 SAH 236 A 1 
HETATM 23 N N1 SAH . . . C 2 1.423 14.613 -14.887 1 2 ? N1 SAH 236 A 1 
HETATM 24 C C2 SAH . . . C 2 1.211 14.173 -16.139 1 2 ? C2 SAH 236 A 1 
HETATM 25 N N3 SAH . . . C 2 1.65 13.022 -16.703 1 7.28 ? N3 SAH 236 A 1 
HETATM 26 C C4 SAH . . . C 2 2.395 12.26 -15.836 1 8.89 ? C4 SAH 236 A 1 
#
_model_server_stats.io_time_ms              170 
_model_server_stats.parse_time_ms           99 
_model_server_stats.create_model_time_ms    90 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           26 
#