data_1KHO # _model_server_result.job_id mzJTn7BmTetecJtcREmdIg _model_server_result.datetime_utc '2025-03-04 22:59:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kho # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":374}' # _entry.id 1KHO # _exptl.entry_id 1KHO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KHO _cell.length_a 117.23 _cell.length_b 117.23 _cell.length_c 220.59 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KHO _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TRP 1 A TRP 1 1_555 C ZN ZN . A ZN 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc2 A N TRP 1 A TRP 1 1_555 C ZN ZN . A ZN 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 A NE2 HIS 11 A HIS 11 1_555 C ZN ZN . A ZN 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc4 A OD1 ASP 56 A ASP 56 1_555 D ZN ZN . A ZN 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc5 A NE2 HIS 126 A HIS 126 1_555 D ZN ZN . A ZN 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc6 A OD2 ASP 130 A ASP 130 1_555 C ZN ZN . A ZN 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc7 A OD1 ASP 130 A ASP 130 1_555 D ZN ZN . A ZN 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc8 A NE2 HIS 136 A HIS 136 1_555 E ZN ZN . A ZN 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc9 A NE2 HIS 148 A HIS 148 1_555 E ZN ZN . A ZN 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc10 A OE2 GLU 152 A GLU 152 1_555 E ZN ZN . A ZN 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc11 A OE1 GLU 152 A GLU 152 1_555 E ZN ZN . A ZN 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc12 C ZN ZN . A ZN 371 1_555 I O HOH . A HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc13 D ZN ZN . A ZN 372 1_555 I O HOH . A HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc14 E ZN ZN . A ZN 373 1_555 I O HOH . A HOH 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc15 B O TRP 1 B TRP 1 1_555 F ZN ZN . B ZN 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc16 B N TRP 1 B TRP 1 1_555 F ZN ZN . B ZN 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc17 B NE2 HIS 11 B HIS 11 1_555 F ZN ZN . B ZN 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc18 B OD1 ASP 56 B ASP 56 1_555 G ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc19 B NE2 HIS 126 B HIS 126 1_555 G ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc20 B OD2 ASP 130 B ASP 130 1_555 F ZN ZN . B ZN 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc21 B OD1 ASP 130 B ASP 130 1_555 G ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc22 B NE2 HIS 136 B HIS 136 1_555 H ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc23 B NE2 HIS 148 B HIS 148 1_555 H ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc24 B OE1 GLU 152 B GLU 152 1_555 H ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc25 B OE2 GLU 152 B GLU 152 1_555 H ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc26 F ZN ZN . B ZN 374 1_555 J O HOH . B HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc27 G ZN ZN . B ZN 375 1_555 J O HOH . B HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1KHO _atom_sites.fract_transf_matrix[1][1] 0.00853 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 371 371 ZN ZN . D 2 ZN A 1 372 372 ZN ZN . E 2 ZN A 1 373 373 ZN ZN . F 2 ZN B 1 374 374 ZN ZN . G 2 ZN B 1 375 375 ZN ZN . H 2 ZN B 1 376 376 ZN ZN . I 3 HOH A 1 374 1 HOH HOH . I 3 HOH A 2 375 3 HOH HOH . I 3 HOH A 3 376 4 HOH HOH . I 3 HOH A 4 377 5 HOH HOH . I 3 HOH A 5 378 6 HOH HOH . I 3 HOH A 6 379 7 HOH HOH . I 3 HOH A 7 380 10 HOH HOH . I 3 HOH A 8 381 12 HOH HOH . I 3 HOH A 9 382 15 HOH HOH . I 3 HOH A 10 383 17 HOH HOH . I 3 HOH A 11 384 19 HOH HOH . I 3 HOH A 12 385 20 HOH HOH . I 3 HOH A 13 386 24 HOH HOH . I 3 HOH A 14 387 25 HOH HOH . I 3 HOH A 15 388 28 HOH HOH . I 3 HOH A 16 389 29 HOH HOH . I 3 HOH A 17 390 30 HOH HOH . I 3 HOH A 18 391 34 HOH HOH . I 3 HOH A 19 392 37 HOH HOH . I 3 HOH A 20 393 38 HOH HOH . I 3 HOH A 21 394 39 HOH HOH . I 3 HOH A 22 395 41 HOH HOH . I 3 HOH A 23 396 42 HOH HOH . I 3 HOH A 24 397 45 HOH HOH . I 3 HOH A 25 398 46 HOH HOH . I 3 HOH A 26 399 47 HOH HOH . I 3 HOH A 27 400 48 HOH HOH . I 3 HOH A 28 401 49 HOH HOH . I 3 HOH A 29 402 50 HOH HOH . I 3 HOH A 30 403 51 HOH HOH . I 3 HOH A 31 404 54 HOH HOH . I 3 HOH A 32 405 55 HOH HOH . I 3 HOH A 33 406 56 HOH HOH . I 3 HOH A 34 407 59 HOH HOH . I 3 HOH A 35 408 62 HOH HOH . I 3 HOH A 36 409 63 HOH HOH . I 3 HOH A 37 410 66 HOH HOH . I 3 HOH A 38 411 72 HOH HOH . I 3 HOH A 39 412 73 HOH HOH . I 3 HOH A 40 413 74 HOH HOH . I 3 HOH A 41 414 76 HOH HOH . I 3 HOH A 42 415 77 HOH HOH . I 3 HOH A 43 416 79 HOH HOH . I 3 HOH A 44 417 80 HOH HOH . I 3 HOH A 45 418 81 HOH HOH . I 3 HOH A 46 419 86 HOH HOH . I 3 HOH A 47 420 89 HOH HOH . I 3 HOH A 48 421 91 HOH HOH . I 3 HOH A 49 422 93 HOH HOH . I 3 HOH A 50 423 94 HOH HOH . I 3 HOH A 51 424 100 HOH HOH . I 3 HOH A 52 425 105 HOH HOH . I 3 HOH A 53 426 106 HOH HOH . I 3 HOH A 54 427 107 HOH HOH . I 3 HOH A 55 428 110 HOH HOH . I 3 HOH A 56 429 111 HOH HOH . I 3 HOH A 57 430 112 HOH HOH . I 3 HOH A 58 431 113 HOH HOH . I 3 HOH A 59 432 115 HOH HOH . I 3 HOH A 60 433 116 HOH HOH . I 3 HOH A 61 434 119 HOH HOH . I 3 HOH A 62 435 120 HOH HOH . I 3 HOH A 63 436 121 HOH HOH . I 3 HOH A 64 437 123 HOH HOH . I 3 HOH A 65 438 124 HOH HOH . I 3 HOH A 66 439 125 HOH HOH . I 3 HOH A 67 440 126 HOH HOH . I 3 HOH A 68 441 129 HOH HOH . I 3 HOH A 69 442 130 HOH HOH . I 3 HOH A 70 443 131 HOH HOH . I 3 HOH A 71 444 133 HOH HOH . I 3 HOH A 72 445 135 HOH HOH . I 3 HOH A 73 446 136 HOH HOH . I 3 HOH A 74 447 137 HOH HOH . I 3 HOH A 75 448 138 HOH HOH . I 3 HOH A 76 449 139 HOH HOH . I 3 HOH A 77 450 140 HOH HOH . I 3 HOH A 78 451 141 HOH HOH . I 3 HOH A 79 452 142 HOH HOH . I 3 HOH A 80 453 144 HOH HOH . I 3 HOH A 81 454 145 HOH HOH . I 3 HOH A 82 455 149 HOH HOH . I 3 HOH A 83 456 151 HOH HOH . I 3 HOH A 84 457 152 HOH HOH . J 3 HOH B 1 377 2 HOH HOH . J 3 HOH B 2 378 8 HOH HOH . J 3 HOH B 3 379 9 HOH HOH . J 3 HOH B 4 380 11 HOH HOH . J 3 HOH B 5 381 13 HOH HOH . J 3 HOH B 6 382 14 HOH HOH . J 3 HOH B 7 383 16 HOH HOH . J 3 HOH B 8 384 18 HOH HOH . J 3 HOH B 9 385 21 HOH HOH . J 3 HOH B 10 386 22 HOH HOH . J 3 HOH B 11 387 23 HOH HOH . J 3 HOH B 12 388 26 HOH HOH . J 3 HOH B 13 389 27 HOH HOH . J 3 HOH B 14 390 31 HOH HOH . J 3 HOH B 15 391 32 HOH HOH . J 3 HOH B 16 392 33 HOH HOH . J 3 HOH B 17 393 35 HOH HOH . J 3 HOH B 18 394 36 HOH HOH . J 3 HOH B 19 395 40 HOH HOH . J 3 HOH B 20 396 43 HOH HOH . J 3 HOH B 21 397 44 HOH HOH . J 3 HOH B 22 398 52 HOH HOH . J 3 HOH B 23 399 53 HOH HOH . J 3 HOH B 24 400 57 HOH HOH . J 3 HOH B 25 401 58 HOH HOH . J 3 HOH B 26 402 60 HOH HOH . J 3 HOH B 27 403 61 HOH HOH . J 3 HOH B 28 404 64 HOH HOH . J 3 HOH B 29 405 65 HOH HOH . J 3 HOH B 30 406 67 HOH HOH . J 3 HOH B 31 407 68 HOH HOH . J 3 HOH B 32 408 69 HOH HOH . J 3 HOH B 33 409 70 HOH HOH . J 3 HOH B 34 410 71 HOH HOH . J 3 HOH B 35 411 75 HOH HOH . J 3 HOH B 36 412 78 HOH HOH . J 3 HOH B 37 413 82 HOH HOH . J 3 HOH B 38 414 83 HOH HOH . J 3 HOH B 39 415 84 HOH HOH . J 3 HOH B 40 416 85 HOH HOH . J 3 HOH B 41 417 87 HOH HOH . J 3 HOH B 42 418 88 HOH HOH . J 3 HOH B 43 419 90 HOH HOH . J 3 HOH B 44 420 92 HOH HOH . J 3 HOH B 45 421 95 HOH HOH . J 3 HOH B 46 422 96 HOH HOH . J 3 HOH B 47 423 97 HOH HOH . J 3 HOH B 48 424 98 HOH HOH . J 3 HOH B 49 425 99 HOH HOH . J 3 HOH B 50 426 101 HOH HOH . J 3 HOH B 51 427 102 HOH HOH . J 3 HOH B 52 428 103 HOH HOH . J 3 HOH B 53 429 104 HOH HOH . J 3 HOH B 54 430 108 HOH HOH . J 3 HOH B 55 431 109 HOH HOH . J 3 HOH B 56 432 114 HOH HOH . J 3 HOH B 57 433 117 HOH HOH . J 3 HOH B 58 434 118 HOH HOH . J 3 HOH B 59 435 122 HOH HOH . J 3 HOH B 60 436 127 HOH HOH . J 3 HOH B 61 437 128 HOH HOH . J 3 HOH B 62 438 132 HOH HOH . J 3 HOH B 63 439 134 HOH HOH . J 3 HOH B 64 440 143 HOH HOH . J 3 HOH B 65 441 146 HOH HOH . J 3 HOH B 66 442 147 HOH HOH . J 3 HOH B 67 443 148 HOH HOH . J 3 HOH B 68 444 150 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 43.898 _atom_site.Cartn_y 20.039 _atom_site.Cartn_z 22.042 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 374 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #