data_1KHR
#
_model_server_result.job_id            575HhBiSn-TCRxqP7QB5aQ 
_model_server_result.datetime_utc      '2024-11-29 11:39:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1khr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":302}' 
#
_entry.id    1KHR 
#
_exptl.entry_id    1KHR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              767.534 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COENZYME A' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1KHR 
_cell.length_a            186.1 
_cell.length_b            185.9 
_cell.length_c            186.9 
_cell.Z_PDB               96 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KHR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        22 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,P,Q,R 1 1 
D,E,F,L,M,N,O,S,T,U 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 N N N 
? 3 O N N 
#
_chem_comp.formula           'C21 H36 N7 O16 P3 S' 
_chem_comp.formula_weight    767.534 
_chem_comp.id                COA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COENZYME A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1A C2A COA sing 70 n y 
N1A C6A COA doub 71 n y 
C2A N3A COA doub 72 n y 
C2A H2A COA sing 73 n n 
N3A C4A COA sing 74 n y 
C4A C5A COA doub 75 n y 
C4A N9A COA sing 76 n y 
C5A C6A COA sing 77 n y 
C5A N7A COA sing 78 n y 
C6A N6A COA sing 79 n n 
N6A H61A COA sing 80 n n 
N6A H62A COA sing 81 n n 
N7A C8A COA doub 82 n y 
C8A N9A COA sing 83 n y 
C8A H8A COA sing 84 n n 
N9A C1B COA sing 85 n n 
C1B C2B COA sing 86 n n 
C1B O4B COA sing 87 n n 
C1B H1B COA sing 88 n n 
C2B O2B COA sing 89 n n 
C2B C3B COA sing 90 n n 
C2B H2B COA sing 91 n n 
O2B HO2A COA sing 92 n n 
C3B O3B COA sing 93 n n 
C3B C4B COA sing 94 n n 
C3B H3B COA sing 95 n n 
O3B P3B COA sing 96 n n 
P3B O7A COA doub 97 n n 
P3B O8A COA sing 98 n n 
P3B O9A COA sing 99 n n 
O8A HOA8 COA sing 100 n n 
O9A HOA9 COA sing 101 n n 
C4B O4B COA sing 102 n n 
C4B C5B COA sing 103 n n 
C4B H4B COA sing 104 n n 
C5B O5B COA sing 105 n n 
C5B H51A COA sing 106 n n 
C5B H52A COA sing 107 n n 
O5B P1A COA sing 108 n n 
P1A O1A COA doub 109 n n 
P1A O2A COA sing 110 n n 
P1A O3A COA sing 111 n n 
O2A HOA2 COA sing 112 n n 
O3A P2A COA sing 113 n n 
P2A O4A COA doub 114 n n 
P2A O5A COA sing 115 n n 
P2A O6A COA sing 116 n n 
O5A HOA5 COA sing 117 n n 
O6A CCP COA sing 118 n n 
CBP CCP COA sing 119 n n 
CBP CDP COA sing 120 n n 
CBP CEP COA sing 121 n n 
CBP CAP COA sing 122 n n 
CCP H121 COA sing 123 n n 
CCP H122 COA sing 124 n n 
CDP H131 COA sing 125 n n 
CDP H132 COA sing 126 n n 
CDP H133 COA sing 127 n n 
CEP H141 COA sing 128 n n 
CEP H142 COA sing 129 n n 
CEP H143 COA sing 130 n n 
CAP OAP COA sing 131 n n 
CAP C9P COA sing 132 n n 
CAP H10 COA sing 133 n n 
OAP HO1 COA sing 134 n n 
C9P O9P COA doub 135 n n 
C9P N8P COA sing 136 n n 
N8P C7P COA sing 137 n n 
N8P HN8 COA sing 138 n n 
C7P C6P COA sing 139 n n 
C7P H71 COA sing 140 n n 
C7P H72 COA sing 141 n n 
C6P C5P COA sing 142 n n 
C6P H61 COA sing 143 n n 
C6P H62 COA sing 144 n n 
C5P O5P COA doub 145 n n 
C5P N4P COA sing 146 n n 
N4P C3P COA sing 147 n n 
N4P HN4 COA sing 148 n n 
C3P C2P COA sing 149 n n 
C3P H31 COA sing 150 n n 
C3P H32 COA sing 151 n n 
C2P S1P COA sing 152 n n 
C2P H21 COA sing 153 n n 
C2P H22 COA sing 154 n n 
S1P HS1 COA sing 155 n n 
#
_atom_sites.entry_id                     1KHR 
_atom_sites.fract_transf_matrix[1][1]    0.005373 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005379 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00535 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 VIR A 1 401 305 VIR VIR . 
H 2 VIR A 1 402 305 VIR VIR . 
I 3 COA A 1 301 302 COA COA . 
J 3 COA B 1 302 302 COA COA . 
K 3 COA C 1 303 302 COA COA . 
L 3 COA D 1 304 302 COA COA . 
M 2 VIR E 1 403 305 VIR VIR . 
N 3 COA E 1 305 302 COA COA . 
O 3 COA F 1 306 302 COA COA . 
P 4 HOH A 1 3514 3514 HOH TIP . 
P 4 HOH A 2 3519 3519 HOH TIP . 
P 4 HOH A 3 3520 3520 HOH TIP . 
P 4 HOH A 4 3523 3523 HOH TIP . 
P 4 HOH A 5 3526 3526 HOH TIP . 
P 4 HOH A 6 3533 3533 HOH TIP . 
P 4 HOH A 7 3550 3550 HOH TIP . 
P 4 HOH A 8 3559 3559 HOH TIP . 
P 4 HOH A 9 3583 3583 HOH TIP . 
P 4 HOH A 10 3584 3584 HOH TIP . 
P 4 HOH A 11 3603 3603 HOH TIP . 
P 4 HOH A 12 3607 3607 HOH TIP . 
P 4 HOH A 13 3608 3608 HOH TIP . 
P 4 HOH A 14 3611 3611 HOH TIP . 
P 4 HOH A 15 3623 3623 HOH TIP . 
Q 4 HOH B 1 3500 3500 HOH TIP . 
Q 4 HOH B 2 3503 3503 HOH TIP . 
Q 4 HOH B 3 3504 3504 HOH TIP . 
Q 4 HOH B 4 3505 3505 HOH TIP . 
Q 4 HOH B 5 3506 3506 HOH TIP . 
Q 4 HOH B 6 3507 3507 HOH TIP . 
Q 4 HOH B 7 3508 3508 HOH TIP . 
Q 4 HOH B 8 3511 3511 HOH TIP . 
Q 4 HOH B 9 3534 3534 HOH TIP . 
Q 4 HOH B 10 3542 3542 HOH TIP . 
Q 4 HOH B 11 3544 3544 HOH TIP . 
Q 4 HOH B 12 3546 3546 HOH TIP . 
Q 4 HOH B 13 3549 3549 HOH TIP . 
Q 4 HOH B 14 3563 3563 HOH TIP . 
Q 4 HOH B 15 3568 3568 HOH TIP . 
Q 4 HOH B 16 3572 3572 HOH TIP . 
Q 4 HOH B 17 3576 3576 HOH TIP . 
Q 4 HOH B 18 3577 3577 HOH TIP . 
Q 4 HOH B 19 3578 3578 HOH TIP . 
Q 4 HOH B 20 3579 3579 HOH TIP . 
Q 4 HOH B 21 3585 3585 HOH TIP . 
Q 4 HOH B 22 3612 3612 HOH TIP . 
R 4 HOH C 1 3517 3517 HOH TIP . 
R 4 HOH C 2 3521 3521 HOH TIP . 
R 4 HOH C 3 3527 3527 HOH TIP . 
R 4 HOH C 4 3530 3530 HOH TIP . 
R 4 HOH C 5 3532 3532 HOH TIP . 
R 4 HOH C 6 3535 3535 HOH TIP . 
R 4 HOH C 7 3543 3543 HOH TIP . 
R 4 HOH C 8 3552 3552 HOH TIP . 
R 4 HOH C 9 3561 3561 HOH TIP . 
R 4 HOH C 10 3573 3573 HOH TIP . 
R 4 HOH C 11 3582 3582 HOH TIP . 
R 4 HOH C 12 3586 3586 HOH TIP . 
R 4 HOH C 13 3587 3587 HOH TIP . 
R 4 HOH C 14 3604 3604 HOH TIP . 
R 4 HOH C 15 3605 3605 HOH TIP . 
R 4 HOH C 16 3606 3606 HOH TIP . 
S 4 HOH D 1 3502 3502 HOH TIP . 
S 4 HOH D 2 3512 3512 HOH TIP . 
S 4 HOH D 3 3513 3513 HOH TIP . 
S 4 HOH D 4 3524 3524 HOH TIP . 
S 4 HOH D 5 3528 3528 HOH TIP . 
S 4 HOH D 6 3529 3529 HOH TIP . 
S 4 HOH D 7 3531 3531 HOH TIP . 
S 4 HOH D 8 3538 3538 HOH TIP . 
S 4 HOH D 9 3540 3540 HOH TIP . 
S 4 HOH D 10 3541 3541 HOH TIP . 
S 4 HOH D 11 3548 3548 HOH TIP . 
S 4 HOH D 12 3551 3551 HOH TIP . 
S 4 HOH D 13 3553 3553 HOH TIP . 
S 4 HOH D 14 3555 3555 HOH TIP . 
S 4 HOH D 15 3569 3569 HOH TIP . 
S 4 HOH D 16 3571 3571 HOH TIP . 
S 4 HOH D 17 3580 3580 HOH TIP . 
S 4 HOH D 18 3588 3588 HOH TIP . 
S 4 HOH D 19 3590 3590 HOH TIP . 
S 4 HOH D 20 3591 3591 HOH TIP . 
S 4 HOH D 21 3592 3592 HOH TIP . 
S 4 HOH D 22 3614 3614 HOH TIP . 
S 4 HOH D 23 3620 3620 HOH TIP . 
T 4 HOH E 1 3509 3509 HOH TIP . 
T 4 HOH E 2 3510 3510 HOH TIP . 
T 4 HOH E 3 3515 3515 HOH TIP . 
T 4 HOH E 4 3518 3518 HOH TIP . 
T 4 HOH E 5 3525 3525 HOH TIP . 
T 4 HOH E 6 3537 3537 HOH TIP . 
T 4 HOH E 7 3539 3539 HOH TIP . 
T 4 HOH E 8 3547 3547 HOH TIP . 
T 4 HOH E 9 3554 3554 HOH TIP . 
T 4 HOH E 10 3557 3557 HOH TIP . 
T 4 HOH E 11 3558 3558 HOH TIP . 
T 4 HOH E 12 3564 3564 HOH TIP . 
T 4 HOH E 13 3565 3565 HOH TIP . 
T 4 HOH E 14 3567 3567 HOH TIP . 
T 4 HOH E 15 3570 3570 HOH TIP . 
T 4 HOH E 16 3574 3574 HOH TIP . 
T 4 HOH E 17 3593 3593 HOH TIP . 
T 4 HOH E 18 3594 3594 HOH TIP . 
T 4 HOH E 19 3595 3595 HOH TIP . 
T 4 HOH E 20 3596 3596 HOH TIP . 
T 4 HOH E 21 3615 3615 HOH TIP . 
T 4 HOH E 22 3616 3616 HOH TIP . 
T 4 HOH E 23 3622 3622 HOH TIP . 
U 4 HOH F 1 3501 3501 HOH TIP . 
U 4 HOH F 2 3516 3516 HOH TIP . 
U 4 HOH F 3 3522 3522 HOH TIP . 
U 4 HOH F 4 3536 3536 HOH TIP . 
U 4 HOH F 5 3545 3545 HOH TIP . 
U 4 HOH F 6 3562 3562 HOH TIP . 
U 4 HOH F 7 3566 3566 HOH TIP . 
U 4 HOH F 8 3598 3598 HOH TIP . 
U 4 HOH F 9 3599 3599 HOH TIP . 
U 4 HOH F 10 3600 3600 HOH TIP . 
U 4 HOH F 11 3602 3602 HOH TIP . 
U 4 HOH F 12 3619 3619 HOH TIP . 
U 4 HOH F 13 3621 3621 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1A COA . . . J 3 83.371 18.842 13.718 0.7 30.25 ? N1A COA 302 B 1 
HETATM 2 C C2A COA . . . J 3 84.07 18.288 12.681 0.7 27.05 ? C2A COA 302 B 1 
HETATM 3 N N3A COA . . . J 3 84.947 18.859 11.91 0.7 28.44 ? N3A COA 302 B 1 
HETATM 4 C C4A COA . . . J 3 85.138 20.175 12.243 0.7 31.56 ? C4A COA 302 B 1 
HETATM 5 C C5A COA . . . J 3 84.536 20.904 13.242 0.7 29.52 ? C5A COA 302 B 1 
HETATM 6 C C6A COA . . . J 3 83.581 20.165 14.032 0.7 29.03 ? C6A COA 302 B 1 
HETATM 7 N N6A COA . . . J 3 82.898 20.699 15.042 0.7 29.82 ? N6A COA 302 B 1 
HETATM 8 N N7A COA . . . J 3 85.031 22.239 13.232 0.7 29.02 ? N7A COA 302 B 1 
HETATM 9 C C8A COA . . . J 3 85.932 22.265 12.204 0.7 29.38 ? C8A COA 302 B 1 
HETATM 10 N N9A COA . . . J 3 85.996 21.037 11.615 0.7 32.89 ? N9A COA 302 B 1 
HETATM 11 C C1B COA . . . J 3 86.766 20.516 10.504 0.7 36.51 ? C1B COA 302 B 1 
HETATM 12 C C2B COA . . . J 3 86.683 21.391 9.283 0.7 40.83 ? C2B COA 302 B 1 
HETATM 13 O O2B COA . . . J 3 85.47 21.141 8.542 0.7 39.18 ? O2B COA 302 B 1 
HETATM 14 C C3B COA . . . J 3 87.968 21.057 8.522 0.7 40.24 ? C3B COA 302 B 1 
HETATM 15 O O3B COA . . . J 3 87.837 19.952 7.568 0.7 49.19 ? O3B COA 302 B 1 
HETATM 16 P P3B COA . . . J 3 89.066 19.443 6.649 0.7 48.99 ? P3B COA 302 B 1 
HETATM 17 O O7A COA . . . J 3 90.349 19.527 7.39 0.7 54.17 ? O7A COA 302 B 1 
HETATM 18 O O8A COA . . . J 3 89.165 20.282 5.431 0.7 54.27 ? O8A COA 302 B 1 
HETATM 19 O O9A COA . . . J 3 88.847 18.034 6.236 0.7 54.27 ? O9A COA 302 B 1 
HETATM 20 C C4B COA . . . J 3 88.938 20.793 9.686 0.7 41.54 ? C4B COA 302 B 1 
HETATM 21 O O4B COA . . . J 3 88.113 20.474 10.841 0.7 36.09 ? O4B COA 302 B 1 
HETATM 22 C C5B COA . . . J 3 89.831 21.967 10.093 0.7 41.78 ? C5B COA 302 B 1 
HETATM 23 O O5B COA . . . J 3 89.163 22.919 10.981 0.7 42.84 ? O5B COA 302 B 1 
HETATM 24 P P1A COA . . . J 3 89.698 24.453 10.994 0.7 44.07 ? P1A COA 302 B 1 
HETATM 25 O O1A COA . . . J 3 88.565 25.391 11.143 0.7 44.97 ? O1A COA 302 B 1 
HETATM 26 O O2A COA . . . J 3 90.413 24.769 9.736 0.7 46.71 ? O2A COA 302 B 1 
HETATM 27 O O3A COA . . . J 3 90.656 24.487 12.243 0.7 45.64 ? O3A COA 302 B 1 
HETATM 28 P P2A COA . . . J 3 90.747 25.481 13.579 0.7 41.11 ? P2A COA 302 B 1 
HETATM 29 O O4A COA . . . J 3 90.459 26.881 13.162 0.7 44.9 ? O4A COA 302 B 1 
HETATM 30 O O5A COA . . . J 3 92.134 25.443 14.116 0.7 45.71 ? O5A COA 302 B 1 
HETATM 31 O O6A COA . . . J 3 89.618 24.751 14.469 0.7 41.85 ? O6A COA 302 B 1 
HETATM 32 C CBP COA . . . J 3 87.609 25.542 15.859 0.7 35.09 ? CBP COA 302 B 1 
HETATM 33 C CCP COA . . . J 3 88.308 25.51 14.465 0.7 33.73 ? CCP COA 302 B 1 
HETATM 34 C CDP COA . . . J 3 87.309 24.122 16.342 0.7 32.18 ? CDP COA 302 B 1 
HETATM 35 C CEP COA . . . J 3 88.511 26.217 16.894 0.7 30.42 ? CEP COA 302 B 1 
HETATM 36 C CAP COA . . . J 3 86.249 26.346 15.793 0.7 33 ? CAP COA 302 B 1 
HETATM 37 O OAP COA . . . J 3 85.352 25.751 14.829 0.7 35.89 ? OAP COA 302 B 1 
HETATM 38 C C9P COA . . . J 3 85.506 26.358 17.182 0.7 33.2 ? C9P COA 302 B 1 
HETATM 39 O O9P COA . . . J 3 84.794 25.397 17.532 0.7 34.25 ? O9P COA 302 B 1 
HETATM 40 N N8P COA . . . J 3 85.655 27.428 17.982 0.7 33.42 ? N8P COA 302 B 1 
HETATM 41 C C7P COA . . . J 3 84.986 27.538 19.332 0.7 31.33 ? C7P COA 302 B 1 
HETATM 42 C C6P COA . . . J 3 83.865 28.613 19.411 0.7 31.09 ? C6P COA 302 B 1 
HETATM 43 C C5P COA . . . J 3 83.213 28.676 20.832 0.7 30.98 ? C5P COA 302 B 1 
HETATM 44 O O5P COA . . . J 3 82.313 27.889 21.153 0.7 30.67 ? O5P COA 302 B 1 
HETATM 45 N N4P COA . . . J 3 83.704 29.646 21.666 0.7 33.41 ? N4P COA 302 B 1 
HETATM 46 C C3P COA . . . J 3 83.207 29.874 23.083 0.7 42.27 ? C3P COA 302 B 1 
HETATM 47 C C2P COA . . . J 3 84.355 29.951 24.13 0.7 46.16 ? C2P COA 302 B 1 
HETATM 48 S S1P COA . . . J 3 85.182 31.636 24.271 0.7 48.89 ? S1P COA 302 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           48 
#