data_1KHT
#
_model_server_result.job_id            Qm0VglR3jxrB07ybak_q0Q 
_model_server_result.datetime_utc      '2024-10-18 19:27:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1kht 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":3193}' 
#
_entry.id    1KHT 
#
_exptl.entry_id    1KHT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1KHT 
_cell.length_a            200.5 
_cell.length_b            200.5 
_cell.length_c            200.5 
_cell.Z_PDB               72 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KHT 
_symmetry.cell_setting             cubic 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1 
A,B,C,D,E,F,G,H 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 200.5 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     1KHT 
_atom_sites.fract_transf_matrix[1][1]    0.004988 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004988 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004988 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 AMP B 1 2193 2193 AMP AMP . 
E 2 AMP C 1 3193 3193 AMP AMP . 
F 3 HOH A 1 193 4 HOH HOH . 
F 3 HOH A 2 194 8 HOH HOH . 
F 3 HOH A 3 195 10 HOH HOH . 
F 3 HOH A 4 196 11 HOH HOH . 
F 3 HOH A 5 197 15 HOH HOH . 
F 3 HOH A 6 198 16 HOH HOH . 
F 3 HOH A 7 199 17 HOH HOH . 
F 3 HOH A 8 200 20 HOH HOH . 
F 3 HOH A 9 201 23 HOH HOH . 
F 3 HOH A 10 202 25 HOH HOH . 
F 3 HOH A 11 203 32 HOH HOH . 
F 3 HOH A 12 204 34 HOH HOH . 
F 3 HOH A 13 205 35 HOH HOH . 
F 3 HOH A 14 206 37 HOH HOH . 
F 3 HOH A 15 207 38 HOH HOH . 
F 3 HOH A 16 208 42 HOH HOH . 
F 3 HOH A 17 209 44 HOH HOH . 
F 3 HOH A 18 210 46 HOH HOH . 
F 3 HOH A 19 211 50 HOH HOH . 
F 3 HOH A 20 212 54 HOH HOH . 
F 3 HOH A 21 213 56 HOH HOH . 
F 3 HOH A 22 214 58 HOH HOH . 
F 3 HOH A 23 215 60 HOH HOH . 
F 3 HOH A 24 216 61 HOH HOH . 
F 3 HOH A 25 217 65 HOH HOH . 
F 3 HOH A 26 218 69 HOH HOH . 
F 3 HOH A 27 219 73 HOH HOH . 
F 3 HOH A 28 220 78 HOH HOH . 
F 3 HOH A 29 221 79 HOH HOH . 
F 3 HOH A 30 222 82 HOH HOH . 
F 3 HOH A 31 223 84 HOH HOH . 
F 3 HOH A 32 224 86 HOH HOH . 
F 3 HOH A 33 225 87 HOH HOH . 
F 3 HOH A 34 226 89 HOH HOH . 
F 3 HOH A 35 227 90 HOH HOH . 
F 3 HOH A 36 228 91 HOH HOH . 
F 3 HOH A 37 229 92 HOH HOH . 
F 3 HOH A 38 230 95 HOH HOH . 
F 3 HOH A 39 231 102 HOH HOH . 
F 3 HOH A 40 232 103 HOH HOH . 
F 3 HOH A 41 233 104 HOH HOH . 
F 3 HOH A 42 234 105 HOH HOH . 
F 3 HOH A 43 235 108 HOH HOH . 
F 3 HOH A 44 236 112 HOH HOH . 
F 3 HOH A 45 237 113 HOH HOH . 
F 3 HOH A 46 238 114 HOH HOH . 
F 3 HOH A 47 239 117 HOH HOH . 
F 3 HOH A 48 240 119 HOH HOH . 
F 3 HOH A 49 241 120 HOH HOH . 
F 3 HOH A 50 242 121 HOH HOH . 
F 3 HOH A 51 243 126 HOH HOH . 
F 3 HOH A 52 244 130 HOH HOH . 
F 3 HOH A 53 245 131 HOH HOH . 
F 3 HOH A 54 246 134 HOH HOH . 
F 3 HOH A 55 247 136 HOH HOH . 
F 3 HOH A 56 248 137 HOH HOH . 
F 3 HOH A 57 249 140 HOH HOH . 
F 3 HOH A 58 250 143 HOH HOH . 
F 3 HOH A 59 251 146 HOH HOH . 
F 3 HOH A 60 252 147 HOH HOH . 
F 3 HOH A 61 253 149 HOH HOH . 
F 3 HOH A 62 254 153 HOH HOH . 
F 3 HOH A 63 255 154 HOH HOH . 
F 3 HOH A 64 256 156 HOH HOH . 
F 3 HOH A 65 257 160 HOH HOH . 
F 3 HOH A 66 258 167 HOH HOH . 
G 3 HOH B 1 2194 1 HOH HOH . 
G 3 HOH B 2 2195 2 HOH HOH . 
G 3 HOH B 3 2196 5 HOH HOH . 
G 3 HOH B 4 2197 7 HOH HOH . 
G 3 HOH B 5 2198 9 HOH HOH . 
G 3 HOH B 6 2199 12 HOH HOH . 
G 3 HOH B 7 2200 13 HOH HOH . 
G 3 HOH B 8 2201 14 HOH HOH . 
G 3 HOH B 9 2202 18 HOH HOH . 
G 3 HOH B 10 2203 19 HOH HOH . 
G 3 HOH B 11 2204 21 HOH HOH . 
G 3 HOH B 12 2205 24 HOH HOH . 
G 3 HOH B 13 2206 26 HOH HOH . 
G 3 HOH B 14 2207 27 HOH HOH . 
G 3 HOH B 15 2208 28 HOH HOH . 
G 3 HOH B 16 2209 30 HOH HOH . 
G 3 HOH B 17 2210 31 HOH HOH . 
G 3 HOH B 18 2211 33 HOH HOH . 
G 3 HOH B 19 2212 40 HOH HOH . 
G 3 HOH B 20 2213 41 HOH HOH . 
G 3 HOH B 21 2214 43 HOH HOH . 
G 3 HOH B 22 2215 47 HOH HOH . 
G 3 HOH B 23 2216 49 HOH HOH . 
G 3 HOH B 24 2217 51 HOH HOH . 
G 3 HOH B 25 2218 52 HOH HOH . 
G 3 HOH B 26 2219 53 HOH HOH . 
G 3 HOH B 27 2220 55 HOH HOH . 
G 3 HOH B 28 2221 57 HOH HOH . 
G 3 HOH B 29 2222 59 HOH HOH . 
G 3 HOH B 30 2223 62 HOH HOH . 
G 3 HOH B 31 2224 63 HOH HOH . 
G 3 HOH B 32 2225 64 HOH HOH . 
G 3 HOH B 33 2226 66 HOH HOH . 
G 3 HOH B 34 2227 67 HOH HOH . 
G 3 HOH B 35 2228 68 HOH HOH . 
G 3 HOH B 36 2229 70 HOH HOH . 
G 3 HOH B 37 2230 72 HOH HOH . 
G 3 HOH B 38 2231 74 HOH HOH . 
G 3 HOH B 39 2232 75 HOH HOH . 
G 3 HOH B 40 2233 76 HOH HOH . 
G 3 HOH B 41 2234 77 HOH HOH . 
G 3 HOH B 42 2235 80 HOH HOH . 
G 3 HOH B 43 2236 81 HOH HOH . 
G 3 HOH B 44 2237 83 HOH HOH . 
G 3 HOH B 45 2238 85 HOH HOH . 
G 3 HOH B 46 2239 88 HOH HOH . 
G 3 HOH B 47 2240 93 HOH HOH . 
G 3 HOH B 48 2241 94 HOH HOH . 
G 3 HOH B 49 2242 96 HOH HOH . 
G 3 HOH B 50 2243 97 HOH HOH . 
G 3 HOH B 51 2244 98 HOH HOH . 
G 3 HOH B 52 2245 99 HOH HOH . 
G 3 HOH B 53 2246 100 HOH HOH . 
G 3 HOH B 54 2247 106 HOH HOH . 
G 3 HOH B 55 2248 107 HOH HOH . 
G 3 HOH B 56 2249 109 HOH HOH . 
G 3 HOH B 57 2250 110 HOH HOH . 
G 3 HOH B 58 2251 111 HOH HOH . 
G 3 HOH B 59 2252 115 HOH HOH . 
G 3 HOH B 60 2253 118 HOH HOH . 
G 3 HOH B 61 2254 122 HOH HOH . 
G 3 HOH B 62 2255 123 HOH HOH . 
G 3 HOH B 63 2256 124 HOH HOH . 
G 3 HOH B 64 2257 125 HOH HOH . 
G 3 HOH B 65 2258 127 HOH HOH . 
G 3 HOH B 66 2259 128 HOH HOH . 
G 3 HOH B 67 2260 129 HOH HOH . 
G 3 HOH B 68 2261 132 HOH HOH . 
G 3 HOH B 69 2262 133 HOH HOH . 
G 3 HOH B 70 2263 135 HOH HOH . 
G 3 HOH B 71 2264 138 HOH HOH . 
G 3 HOH B 72 2265 141 HOH HOH . 
G 3 HOH B 73 2266 142 HOH HOH . 
G 3 HOH B 74 2267 144 HOH HOH . 
G 3 HOH B 75 2268 145 HOH HOH . 
G 3 HOH B 76 2269 148 HOH HOH . 
G 3 HOH B 77 2270 150 HOH HOH . 
G 3 HOH B 78 2271 151 HOH HOH . 
G 3 HOH B 79 2272 152 HOH HOH . 
G 3 HOH B 80 2273 168 HOH HOH . 
G 3 HOH B 81 2274 169 HOH HOH . 
G 3 HOH B 82 2275 170 HOH HOH . 
G 3 HOH B 83 2276 171 HOH HOH . 
G 3 HOH B 84 2277 172 HOH HOH . 
G 3 HOH B 85 2278 173 HOH HOH . 
G 3 HOH B 86 2279 174 HOH HOH . 
G 3 HOH B 87 2280 175 HOH HOH . 
G 3 HOH B 88 2281 176 HOH HOH . 
G 3 HOH B 89 2282 177 HOH HOH . 
G 3 HOH B 90 2283 178 HOH HOH . 
G 3 HOH B 91 2284 179 HOH HOH . 
H 3 HOH C 1 3194 3 HOH HOH . 
H 3 HOH C 2 3195 6 HOH HOH . 
H 3 HOH C 3 3196 22 HOH HOH . 
H 3 HOH C 4 3197 29 HOH HOH . 
H 3 HOH C 5 3198 36 HOH HOH . 
H 3 HOH C 6 3199 39 HOH HOH . 
H 3 HOH C 7 3200 45 HOH HOH . 
H 3 HOH C 8 3201 48 HOH HOH . 
H 3 HOH C 9 3202 71 HOH HOH . 
H 3 HOH C 10 3203 101 HOH HOH . 
H 3 HOH C 11 3204 116 HOH HOH . 
H 3 HOH C 12 3205 139 HOH HOH . 
H 3 HOH C 13 3206 155 HOH HOH . 
H 3 HOH C 14 3207 157 HOH HOH . 
H 3 HOH C 15 3208 158 HOH HOH . 
H 3 HOH C 16 3209 159 HOH HOH . 
H 3 HOH C 17 3210 161 HOH HOH . 
H 3 HOH C 18 3211 162 HOH HOH . 
H 3 HOH C 19 3212 163 HOH HOH . 
H 3 HOH C 20 3213 164 HOH HOH . 
H 3 HOH C 21 3214 165 HOH HOH . 
H 3 HOH C 22 3215 166 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . E 2 -10.279 46.918 123.195 1 69.04 ? P AMP 3193 C 1 
HETATM 2 O O1P AMP . . . E 2 -10.694 47.76 122.02 1 67.44 ? O1P AMP 3193 C 1 
HETATM 3 O O2P AMP . . . E 2 -8.828 46.564 123.382 1 67.32 ? O2P AMP 3193 C 1 
HETATM 4 O O3P AMP . . . E 2 -11.172 45.545 123.131 1 67.3 ? O3P AMP 3193 C 1 
HETATM 5 O O5' AMP . . . E 2 -10.811 47.616 124.583 1 67.31 ? O5' AMP 3193 C 1 
HETATM 6 C C5' AMP . . . E 2 -12.141 48.2 124.645 1 66.73 ? C5' AMP 3193 C 1 
HETATM 7 C C4' AMP . . . E 2 -12.139 49.511 125.453 1 66.51 ? C4' AMP 3193 C 1 
HETATM 8 O O4' AMP . . . E 2 -11.218 49.412 126.584 1 66.82 ? O4' AMP 3193 C 1 
HETATM 9 C C3' AMP . . . E 2 -11.643 50.742 124.68 1 65.89 ? C3' AMP 3193 C 1 
HETATM 10 O O3' AMP . . . E 2 -12.656 51.376 123.876 1 66.48 ? O3' AMP 3193 C 1 
HETATM 11 C C2' AMP . . . E 2 -11.217 51.681 125.802 1 64.96 ? C2' AMP 3193 C 1 
HETATM 12 O O2' AMP . . . E 2 -12.317 52.432 126.338 1 64.58 ? O2' AMP 3193 C 1 
HETATM 13 C C1' AMP . . . E 2 -10.708 50.747 126.895 1 65.01 ? C1' AMP 3193 C 1 
HETATM 14 N N9 AMP . . . E 2 -9.22 50.855 127.12 1 63 ? N9 AMP 3193 C 1 
HETATM 15 C C8 AMP . . . E 2 -8.246 49.933 126.914 1 62.25 ? C8 AMP 3193 C 1 
HETATM 16 N N7 AMP . . . E 2 -7.026 50.356 127.287 1 61.69 ? N7 AMP 3193 C 1 
HETATM 17 C C5 AMP . . . E 2 -7.277 51.582 127.771 1 61.11 ? C5 AMP 3193 C 1 
HETATM 18 C C6 AMP . . . E 2 -6.322 52.437 128.308 1 59.5 ? C6 AMP 3193 C 1 
HETATM 19 N N6 AMP . . . E 2 -5.027 52.115 128.4 1 56.97 ? N6 AMP 3193 C 1 
HETATM 20 N N1 AMP . . . E 2 -6.808 53.639 128.751 1 60.33 ? N1 AMP 3193 C 1 
HETATM 21 C C2 AMP . . . E 2 -8.112 53.988 128.699 1 60.56 ? C2 AMP 3193 C 1 
HETATM 22 N N3 AMP . . . E 2 -9.017 53.139 128.182 1 61.04 ? N3 AMP 3193 C 1 
HETATM 23 C C4 AMP . . . E 2 -8.627 51.921 127.702 1 62.05 ? C4 AMP 3193 C 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           23 
#